RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 REG3AQ06141 175 aa7.92□□□□□ -1.14
CUX1-202ENST00000292538 CLEC2BQ92478 149 aa7.92□□□□□ -1.14
CUX1-202ENST00000292538 NANOS2P60321 138 aaKnown RBP7.91□□□□□ -1.14
CUX1-202ENST00000292538 A0A087WZ39 114 aa7.9□□□□□ -1.14
CUX1-202ENST00000292538 CHCHD10Q8WYQ3 142 aaPredicted RBP7.9□□□□□ -1.14
CUX1-202ENST00000292538 CKS1BP61024 79 aa7.89□□□□□ -1.15
CUX1-202ENST00000292538 FAM19A3Q7Z5A8 133 aa7.89□□□□□ -1.15
CUX1-202ENST00000292538 A0A1B0GUV1 79 aa7.89□□□□□ -1.15
CUX1-202ENST00000292538 F8WDY8 70 aa7.89□□□□□ -1.15
CUX1-202ENST00000292538 IFITM1P13164 125 aa7.89□□□□□ -1.15
CUX1-202ENST00000292538 SMCPP49901 116 aaPredicted RBP7.89□□□□□ -1.15
CUX1-202ENST00000292538 HERV-K104P63124 156 aa7.89□□□□□ -1.15
CUX1-202ENST00000292538 UBE2WQ96B02 151 aa7.89□□□□□ -1.15
CUX1-202ENST00000292538 PRO0461Q9UI25 63 aa7.89□□□□□ -1.15
CUX1-202ENST00000292538 WIPF1O43516 503 aa7.88□□□□□ -1.15
CUX1-202ENST00000292538 C9orf116Q5BN46 136 aaPredicted RBP7.88□□□□□ -1.15
CUX1-202ENST00000292538 KPRPQ5T749 579 aaPredicted RBP7.88□□□□□ -1.15
CUX1-202ENST00000292538 TRBV20-1A0A075B6N2 111 aa7.88□□□□□ -1.15
CUX1-202ENST00000292538 TIMM17BO60830 172 aa7.88□□□□□ -1.15
CUX1-202ENST00000292538 COX6CP09669 75 aa7.88□□□□□ -1.15
CUX1-202ENST00000292538 OR13C6PQ8NH95 151 aa7.88□□□□□ -1.15
CUX1-202ENST00000292538 COX7A2LO14548 114 aa7.87□□□□□ -1.15
CUX1-202ENST00000292538 C1orf43Q9BWL3 253 aa7.87□□□□□ -1.15
CUX1-202ENST00000292538 SND1-IT1Q9HBX3 110 aa7.87□□□□□ -1.15
CUX1-202ENST00000292538 GAGE12HA6NDE8 117 aa7.86□□□□□ -1.15
CUX1-202ENST00000292538 LYPD5Q6UWN5 251 aa7.86□□□□□ -1.15
CUX1-202ENST00000292538 SLC25A20O43772 301 aa7.86□□□□□ -1.15
CUX1-202ENST00000292538 ATXN8Q156A1 80 aa7.86□□□□□ -1.15
CUX1-202ENST00000292538 WFDC10BQ8IUB3 73 aa7.86□□□□□ -1.15
CUX1-202ENST00000292538 LELP1Q5T871 98 aa7.85□□□□□ -1.15
CUX1-202ENST00000292538 C6orf223Q8N319 242 aa7.85□□□□□ -1.15
CUX1-202ENST00000292538 C11orf45Q8TAV5 145 aa7.85□□□□□ -1.15
CUX1-202ENST00000292538 CRPP02741 224 aa7.85□□□□□ -1.15
CUX1-202ENST00000292538 PRR3P79522 188 aaKnown RBP7.85□□□□□ -1.15
CUX1-202ENST00000292538 CD164L2Q6UWJ8 174 aa7.85□□□□□ -1.15
CUX1-202ENST00000292538 DEFB131BA0A096LNP1 70 aa7.84□□□□□ -1.15
CUX1-202ENST00000292538 EGFEM1PQ0D2K5 195 aa7.84□□□□□ -1.15
CUX1-202ENST00000292538 CCL18P55774 89 aa7.84□□□□□ -1.15
CUX1-202ENST00000292538 ANKRD29Q8N6D5 301 aa7.84□□□□□ -1.15
CUX1-202ENST00000292538 TRBV30A0A0K0K1B3 111 aa7.83□□□□□ -1.16
CUX1-202ENST00000292538 LINC01620Q4KN68 170 aa7.83□□□□□ -1.16
CUX1-202ENST00000292538 COPS9Q8WXC6 57 aa7.83□□□□□ -1.16
CUX1-202ENST00000292538 CMYA5Q8N3K9 4069 aa7.83□□□□□ -1.16
CUX1-202ENST00000292538 J3QR89 54 aa7.83□□□□□ -1.16
CUX1-202ENST00000292538 LINC00337Q8N6G1 96 aa7.82□□□□□ -1.16
CUX1-202ENST00000292538 IBA57-AS1B1ANH7 110 aa7.81□□□□□ -1.16
CUX1-202ENST00000292538 FOXI1Q12951 378 aa7.81□□□□□ -1.16
CUX1-202ENST00000292538 HIGD2BQ4VC39 106 aa7.81□□□□□ -1.16
CUX1-202ENST00000292538 ENHOQ6UWT2 76 aa7.81□□□□□ -1.16
CUX1-202ENST00000292538 UNQ6190/PRO20217Q6UXQ8 127 aa7.81□□□□□ -1.16
CUX1-202ENST00000292538 NTN5Q8WTR8 489 aaPredicted RBP7.81□□□□□ -1.16
CUX1-202ENST00000292538 Q9HAA7 133 aa7.81□□□□□ -1.16
CUX1-202ENST00000292538 ESRGQ1W209 222 aa7.81□□□□□ -1.16
CUX1-202ENST00000292538 SPAG11BQ08648 103 aa7.8□□□□□ -1.16
CUX1-202ENST00000292538 C10orf25Q5T742 122 aa7.8□□□□□ -1.16
CUX1-202ENST00000292538 Q8IZM0 81 aa7.8□□□□□ -1.16
CUX1-202ENST00000292538 IGKV2-28A0A075B6P5 120 aa7.8□□□□□ -1.16
CUX1-202ENST00000292538 TEX49A0A1B0GTD5 131 aa7.8□□□□□ -1.16
CUX1-202ENST00000292538 IGKV2D-28P01615 120 aa7.8□□□□□ -1.16
CUX1-202ENST00000292538 TEN1Q86WV5 123 aa7.79□□□□□ -1.16
CUX1-202ENST00000292538 CARD19Q96LW7 228 aa7.79□□□□□ -1.16
CUX1-202ENST00000292538 A0A1B0GV72 72 aa7.79□□□□□ -1.16
CUX1-202ENST00000292538 STAB2Q8WWQ8 2551 aa7.79□□□□□ -1.16
CUX1-202ENST00000292538 TRAV13-2A0A0B4J235 113 aa7.78□□□□□ -1.16
CUX1-202ENST00000292538 KIAA0087Q14695 138 aa7.77□□□□□ -1.17
CUX1-202ENST00000292538 IGKV2D-24A0A075B6R9 120 aa7.77□□□□□ -1.17
CUX1-202ENST00000292538 K7EIL1 84 aa7.77□□□□□ -1.17
CUX1-202ENST00000292538 NCR3O14931 201 aa7.77□□□□□ -1.17
CUX1-202ENST00000292538 SMIM11BQ8TCY0 68 aa7.77□□□□□ -1.17
CUX1-202ENST00000292538 PPDPFLQ8WWR9 84 aa7.77□□□□□ -1.17
CUX1-202ENST00000292538 TRBV10-2A0A0K0K1G8 114 aa7.76□□□□□ -1.17
CUX1-202ENST00000292538 M0QXV9 152 aa7.76□□□□□ -1.17
CUX1-202ENST00000292538 LST1O00453 97 aa7.76□□□□□ -1.17
CUX1-202ENST00000292538 FAM218AQ96MZ4 157 aa7.76□□□□□ -1.17
CUX1-202ENST00000292538 MDFIQ99750 246 aa7.76□□□□□ -1.17
CUX1-202ENST00000292538 XAGE1AQ9HD64 81 aa7.75□□□□□ -1.17
CUX1-202ENST00000292538 ZNF561-AS1K7EIQ3 104 aa7.75□□□□□ -1.17
CUX1-202ENST00000292538 TRAV8-4A0A0B4J246 113 aa7.74□□□□□ -1.17
CUX1-202ENST00000292538 SPATA25Q9BR10 227 aa7.74□□□□□ -1.17
CUX1-202ENST00000292538 PRR34Q9NV39 138 aa7.74□□□□□ -1.17
CUX1-202ENST00000292538 SLPIP03973 132 aa7.73□□□□□ -1.17
CUX1-202ENST00000292538 SCGB1A1P11684 91 aa7.73□□□□□ -1.17
CUX1-202ENST00000292538 A0A087WYN8 130 aa7.72□□□□□ -1.17
CUX1-202ENST00000292538 CAMK2N2Q96S95 79 aa7.72□□□□□ -1.17
CUX1-202ENST00000292538 TENM2Q9NT68 2774 aa7.72□□□□□ -1.17
CUX1-202ENST00000292538 DNAL4O96015 105 aa7.72□□□□□ -1.17
CUX1-202ENST00000292538 BAALC-AS2P0C853 105 aa7.72□□□□□ -1.17
CUX1-202ENST00000292538 S100A7L2Q5SY68 101 aa7.72□□□□□ -1.17
CUX1-202ENST00000292538 SIGMAR1Q99720 223 aa7.72□□□□□ -1.17
CUX1-202ENST00000292538 CXCL5P42830 114 aa7.71□□□□□ -1.18
CUX1-202ENST00000292538 GAGE2EQ4V326 116 aa7.71□□□□□ -1.18
CUX1-202ENST00000292538 GAGE2DQ9UEU5 116 aa7.71□□□□□ -1.18
CUX1-202ENST00000292538 LECT2O14960 151 aa7.71□□□□□ -1.18
CUX1-202ENST00000292538 Q8NDZ9 215 aa7.71□□□□□ -1.18
CUX1-202ENST00000292538 KLK5Q9Y337 293 aaPredicted RBP7.71□□□□□ -1.18
CUX1-202ENST00000292538 RPL18AQ02543 176 aaKnown RBP7.7□□□□□ -1.18
CUX1-202ENST00000292538 RPL28P46779 137 aaKnown RBP7.69□□□□□ -1.18
CUX1-202ENST00000292538 TRAV10A0A0B4J240 114 aa7.69□□□□□ -1.18
CUX1-202ENST00000292538 H3BNG1 76 aa7.69□□□□□ -1.18
CUX1-202ENST00000292538 C6orf48Q9UBA6 75 aa7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms