RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 BRI3O95415 125 aa8.29□□□□□ -1.08
PTPN4-201ENST00000263708 LINC00575Q6W349 94 aa8.29□□□□□ -1.08
PTPN4-201ENST00000263708 CRIP1P50238 77 aa8.29□□□□□ -1.08
PTPN4-201ENST00000263708 FBXL19-AS1Q494R0 122 aa8.29□□□□□ -1.08
PTPN4-201ENST00000263708 TLN1Q9Y490 2541 aaKnown RBP8.29□□□□□ -1.08
PTPN4-201ENST00000263708 SPTBN4Q9H254 2564 aa8.28□□□□□ -1.08
PTPN4-201ENST00000263708 LINC01006Q8NI28 216 aa8.28□□□□□ -1.08
PTPN4-201ENST00000263708 U3KQK5 164 aa8.28□□□□□ -1.08
PTPN4-201ENST00000263708 Q9UF83 564 aa8.28□□□□□ -1.08
PTPN4-201ENST00000263708 Q6ZS46 218 aa8.28□□□□□ -1.08
PTPN4-201ENST00000263708 PSMG3-AS1Q96PY0 264 aa8.27□□□□□ -1.09
PTPN4-201ENST00000263708 A0A087WSZ3 146 aa8.27□□□□□ -1.09
PTPN4-201ENST00000263708 NRACQ8N912 160 aa8.27□□□□□ -1.09
PTPN4-201ENST00000263708 A0A087WYN8 130 aa8.27□□□□□ -1.09
PTPN4-201ENST00000263708 A0A1B0GU69 56 aa8.26□□□□□ -1.09
PTPN4-201ENST00000263708 PIEZO1Q92508 2521 aa8.26□□□□□ -1.09
PTPN4-201ENST00000263708 COX6A2Q02221 97 aa8.25□□□□□ -1.09
PTPN4-201ENST00000263708 SPACA4Q8TDM5 124 aa8.25□□□□□ -1.09
PTPN4-201ENST00000263708 CDC42SE2Q9NRR3 84 aa8.25□□□□□ -1.09
PTPN4-201ENST00000263708 SMR3AQ99954 134 aa8.25□□□□□ -1.09
PTPN4-201ENST00000263708 XGP55808 180 aa8.25□□□□□ -1.09
PTPN4-201ENST00000263708 WISP2O76076 250 aa8.24□□□□□ -1.09
PTPN4-201ENST00000263708 EGFEM1PQ0D2K5 195 aa8.24□□□□□ -1.09
PTPN4-201ENST00000263708 A0A087WVE0 104 aa8.24□□□□□ -1.09
PTPN4-201ENST00000263708 Q8N3U1 123 aa8.24□□□□□ -1.09
PTPN4-201ENST00000263708 MUC7Q8TAX7 377 aa8.24□□□□□ -1.09
PTPN4-201ENST00000263708 PRR9Q5T870 116 aa8.23□□□□□ -1.09
PTPN4-201ENST00000263708 NAV2Q8IVL1 2488 aa8.23□□□□□ -1.09
PTPN4-201ENST00000263708 C1orf64Q8NEQ6 169 aa8.23□□□□□ -1.09
PTPN4-201ENST00000263708 IGLV8-61A0A075B6I0 122 aa8.23□□□□□ -1.09
PTPN4-201ENST00000263708 A0A1W2PNU3 283 aaPredicted RBP8.23□□□□□ -1.09
PTPN4-201ENST00000263708 Q6ZTC4 211 aa8.22□□□□□ -1.09
PTPN4-201ENST00000263708 COL4A3Q01955 1670 aa8.22□□□□□ -1.09
PTPN4-201ENST00000263708 ANKRD11Q6UB99 2663 aaPredicted RBP8.21□□□□□ -1.1
PTPN4-201ENST00000263708 JMJD1CQ15652 2540 aa8.21□□□□□ -1.1
PTPN4-201ENST00000263708 ACYP2P14621 99 aa8.21□□□□□ -1.1
PTPN4-201ENST00000263708 FSTL3O95633 263 aa8.2□□□□□ -1.1
PTPN4-201ENST00000263708 C1orf229Q6ZS94 237 aaPredicted RBP8.2□□□□□ -1.1
PTPN4-201ENST00000263708 A8MTW9 85 aa8.18□□□□□ -1.1
PTPN4-201ENST00000263708 KLLNB2CW77 178 aa8.18□□□□□ -1.1
PTPN4-201ENST00000263708 ABCA12Q86UK0 2595 aa8.18□□□□□ -1.1
PTPN4-201ENST00000263708 FN1P02751 2386 aaKnown RBP8.18□□□□□ -1.1
PTPN4-201ENST00000263708 C2orf91Q6ZV80 131 aa8.18□□□□□ -1.1
PTPN4-201ENST00000263708 ANKRD17O75179 2603 aaKnown RBP8.18□□□□□ -1.1
PTPN4-201ENST00000263708 LINC00574Q9H8X3 128 aa8.18□□□□□ -1.1
PTPN4-201ENST00000263708 P0C879 139 aa8.17□□□□□ -1.1
PTPN4-201ENST00000263708 VPREB1P12018 145 aa8.17□□□□□ -1.1
PTPN4-201ENST00000263708 CEP295Q9C0D2 2601 aa8.16□□□□□ -1.1
PTPN4-201ENST00000263708 MOBPQ13875 183 aa8.16□□□□□ -1.1
PTPN4-201ENST00000263708 IGLV4-60A0A075B6I1 120 aa8.16□□□□□ -1.1
PTPN4-201ENST00000263708 C11orf1Q9H5F2 150 aa8.16□□□□□ -1.1
PTPN4-201ENST00000263708 GAS8-AS1O95177 125 aa8.16□□□□□ -1.1
PTPN4-201ENST00000263708 C6orf48Q9UBA6 75 aa8.16□□□□□ -1.1
PTPN4-201ENST00000263708 LINC00242Q5T6M2 205 aa8.15□□□□□ -1.1
PTPN4-201ENST00000263708 C11orf71Q6IPW1 123 aa8.15□□□□□ -1.1
PTPN4-201ENST00000263708 TMEM254Q8TBM7 123 aa8.14□□□□□ -1.11
PTPN4-201ENST00000263708 EDN2P20800 178 aa8.14□□□□□ -1.11
PTPN4-201ENST00000263708 SMIM1B2RUZ4 78 aa8.14□□□□□ -1.11
PTPN4-201ENST00000263708 C11orf21Q9P2W6 132 aa8.14□□□□□ -1.11
PTPN4-201ENST00000263708 SSBP3-AS1Q7Z2R9 100 aa8.13□□□□□ -1.11
PTPN4-201ENST00000263708 FAM229AH3BQW9 127 aa8.13□□□□□ -1.11
PTPN4-201ENST00000263708 POLR2KP53803 58 aaKnown RBP8.13□□□□□ -1.11
PTPN4-201ENST00000263708 BRWD1-AS2P59051 145 aa8.13□□□□□ -1.11
PTPN4-201ENST00000263708 ATP11AUNQ6ZP68 121 aa8.13□□□□□ -1.11
PTPN4-201ENST00000263708 CHD8Q9HCK8 2581 aa8.13□□□□□ -1.11
PTPN4-201ENST00000263708 SMIM29Q86T20 159 aa8.12□□□□□ -1.11
PTPN4-201ENST00000263708 IGLV1-40P01703 118 aa8.12□□□□□ -1.11
PTPN4-201ENST00000263708 CHCHD7Q9BUK0 85 aa8.12□□□□□ -1.11
PTPN4-201ENST00000263708 Q8N6K4 173 aa8.11□□□□□ -1.11
PTPN4-201ENST00000263708 SMCR5Q8TEV8 140 aa8.11□□□□□ -1.11
PTPN4-201ENST00000263708 FHL2Q14192 279 aa8.11□□□□□ -1.11
PTPN4-201ENST00000263708 F8WDY8 70 aa8.1□□□□□ -1.11
PTPN4-201ENST00000263708 COL27A1Q8IZC6 1860 aaPredicted RBP8.1□□□□□ -1.11
PTPN4-201ENST00000263708 COX6B2Q6YFQ2 88 aa8.1□□□□□ -1.11
PTPN4-201ENST00000263708 IGIPA6NJ69 53 aa8.1□□□□□ -1.11
PTPN4-201ENST00000263708 J3QL48 77 aa8.09□□□□□ -1.11
PTPN4-201ENST00000263708 ADAMTSL4-AS1Q5T5F5 129 aa8.09□□□□□ -1.11
PTPN4-201ENST00000263708 LYPD5Q6UWN5 251 aa8.09□□□□□ -1.11
PTPN4-201ENST00000263708 EIF4EBP1Q13541 118 aaPredicted RBP8.09□□□□□ -1.11
PTPN4-201ENST00000263708 YPEL4Q96NS1 127 aa8.09□□□□□ -1.11
PTPN4-201ENST00000263708 LINC00313P59037 77 aa8.09□□□□□ -1.12
PTPN4-201ENST00000263708 Q8N2B8 174 aa8.08□□□□□ -1.12
PTPN4-201ENST00000263708 C22orf24Q9Y442 160 aa8.08□□□□□ -1.12
PTPN4-201ENST00000263708 ACANP16112 2415 aa8.08□□□□□ -1.12
PTPN4-201ENST00000263708 CHTF8P0CG12 524 aa8.08□□□□□ -1.12
PTPN4-201ENST00000263708 C8orf87E5RJ46 101 aa8.08□□□□□ -1.12
PTPN4-201ENST00000263708 Q6ZRU5 148 aa8.08□□□□□ -1.12
PTPN4-201ENST00000263708 F8P00451 2351 aa8.07□□□□□ -1.12
PTPN4-201ENST00000263708 TP53AIP1Q9HCN2 124 aa8.07□□□□□ -1.12
PTPN4-201ENST00000263708 TYMSOSQ8TAI1 123 aa8.07□□□□□ -1.12
PTPN4-201ENST00000263708 ODF3L2Q3SX64 289 aa8.07□□□□□ -1.12
PTPN4-201ENST00000263708 KIAA0087Q14695 138 aa8.07□□□□□ -1.12
PTPN4-201ENST00000263708 MDFIQ99750 246 aa8.07□□□□□ -1.12
PTPN4-201ENST00000263708 CXCL6P80162 114 aa8.06□□□□□ -1.12
PTPN4-201ENST00000263708 USP9XQ93008 2570 aaPredicted RBP8.06□□□□□ -1.12
PTPN4-201ENST00000263708 ZNF295-AS1Q8N0V1 137 aa8.06□□□□□ -1.12
PTPN4-201ENST00000263708 APLNQ9ULZ1 77 aa8.06□□□□□ -1.12
PTPN4-201ENST00000263708 TSPEAR-AS2P59090 65 aa8.06□□□□□ -1.12
PTPN4-201ENST00000263708 NHLRC4P0CG21 123 aaPredicted RBP8.06□□□□□ -1.12
PTPN4-201ENST00000263708 Q96NJ1 140 aa8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms