RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 RBMY1FQ15415 496 aaKnown RBP8.03□□□□□ -1.12
CLN3-244ENST00000636147 IGLV10-54A0A075B6I4 117 aa8.02□□□□□ -1.13
CLN3-244ENST00000636147 COX7CP15954 63 aa8.02□□□□□ -1.13
CLN3-244ENST00000636147 CHCHD7Q9BUK0 85 aa8.02□□□□□ -1.13
CLN3-244ENST00000636147 SS18Q15532 418 aa8.02□□□□□ -1.13
CLN3-244ENST00000636147 VPREB3Q9UKI3 123 aa8.02□□□□□ -1.13
CLN3-244ENST00000636147 C18orf65Q6ZTR6 163 aa8.02□□□□□ -1.13
CLN3-244ENST00000636147 C20orf197Q8N268 126 aa8.02□□□□□ -1.13
CLN3-244ENST00000636147 WFDC9Q8NEX5 89 aa8.02□□□□□ -1.13
CLN3-244ENST00000636147 ANKRD17O75179 2603 aaKnown RBP8.01□□□□□ -1.13
CLN3-244ENST00000636147 TIMM17BO60830 172 aa8.01□□□□□ -1.13
CLN3-244ENST00000636147 AVPP01185 164 aa8.01□□□□□ -1.13
CLN3-244ENST00000636147 GHRHP01286 108 aa8.01□□□□□ -1.13
CLN3-244ENST00000636147 DSCR8Q96T75 97 aa8.01□□□□□ -1.13
CLN3-244ENST00000636147 MAP6D1Q9H9H5 199 aa8.01□□□□□ -1.13
CLN3-244ENST00000636147 IGLV1-40P01703 118 aa8.01□□□□□ -1.13
CLN3-244ENST00000636147 PSMB8P28062 276 aa8.01□□□□□ -1.13
CLN3-244ENST00000636147 RNF152Q8N8N0 203 aa8□□□□□ -1.13
CLN3-244ENST00000636147 SMIM11BQ8TCY0 68 aa8□□□□□ -1.13
CLN3-244ENST00000636147 FAM19A4Q96LR4 140 aa8□□□□□ -1.13
CLN3-244ENST00000636147 USP17L23D6RBM5 183 aa8□□□□□ -1.13
CLN3-244ENST00000636147 CITED2Q99967 270 aaPredicted RBP8□□□□□ -1.13
CLN3-244ENST00000636147 ASH1LQ9NR48 2969 aaKnown RBP8□□□□□ -1.13
CLN3-244ENST00000636147 FLNBO75369 2602 aaKnown RBP7.99□□□□□ -1.13
CLN3-244ENST00000636147 SMIM1B2RUZ4 78 aa7.99□□□□□ -1.13
CLN3-244ENST00000636147 ESM1Q9NQ30 184 aa7.99□□□□□ -1.13
CLN3-244ENST00000636147 LOC100131303A0A0U1RQF7 123 aa7.98□□□□□ -1.13
CLN3-244ENST00000636147 RPL18AQ02543 176 aaKnown RBP7.98□□□□□ -1.13
CLN3-244ENST00000636147 FAM19A5Q7Z5A7 132 aaPredicted RBP7.98□□□□□ -1.13
CLN3-244ENST00000636147 LITAFQ99732 161 aa7.98□□□□□ -1.13
CLN3-244ENST00000636147 TRBV7-7A0A0K0K1E9 115 aa7.98□□□□□ -1.13
CLN3-244ENST00000636147 LINC00526Q96FQ7 95 aa7.98□□□□□ -1.13
CLN3-244ENST00000636147 ENHOQ6UWT2 76 aa7.98□□□□□ -1.13
CLN3-244ENST00000636147 PF4P02776 101 aa7.97□□□□□ -1.13
CLN3-244ENST00000636147 A0A087WYN8 130 aa7.97□□□□□ -1.13
CLN3-244ENST00000636147 SOSTDC1Q6X4U4 206 aa7.97□□□□□ -1.13
CLN3-244ENST00000636147 C5orf47Q569G3 176 aa7.96□□□□□ -1.13
CLN3-244ENST00000636147 ANGP03950 147 aaKnown RBP7.96□□□□□ -1.14
CLN3-244ENST00000636147 RBM3P98179 157 aaKnown RBP7.96□□□□□ -1.14
CLN3-244ENST00000636147 SERP2Q8N6R1 65 aa7.96□□□□□ -1.14
CLN3-244ENST00000636147 FAM218AQ96MZ4 157 aa7.96□□□□□ -1.14
CLN3-244ENST00000636147 LAMA5O15230 3695 aa7.96□□□□□ -1.14
CLN3-244ENST00000636147 CXCL5P42830 114 aa7.96□□□□□ -1.14
CLN3-244ENST00000636147 CCL18P55774 89 aa7.96□□□□□ -1.14
CLN3-244ENST00000636147 TRBV10-1A0A0K0K1A3 114 aa7.95□□□□□ -1.14
CLN3-244ENST00000636147 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP7.95□□□□□ -1.14
CLN3-244ENST00000636147 LINC00846Q9NV44 126 aa7.95□□□□□ -1.14
CLN3-244ENST00000636147 SMG1Q96Q15 3661 aaKnown RBP7.94□□□□□ -1.14
CLN3-244ENST00000636147 TMEM89A2RUT3 159 aa7.94□□□□□ -1.14
CLN3-244ENST00000636147 DSCR9P59020 149 aa7.94□□□□□ -1.14
CLN3-244ENST00000636147 COL12A1Q99715 3063 aa7.94□□□□□ -1.14
CLN3-244ENST00000636147 ZNF462Q96JM2 2506 aa7.94□□□□□ -1.14
CLN3-244ENST00000636147 GYPEP15421 78 aa7.94□□□□□ -1.14
CLN3-244ENST00000636147 SMCR5Q8TEV8 140 aa7.94□□□□□ -1.14
CLN3-244ENST00000636147 CDC42SE2Q9NRR3 84 aa7.94□□□□□ -1.14
CLN3-244ENST00000636147 DOPEY1Q5JWR5 2465 aa7.94□□□□□ -1.14
CLN3-244ENST00000636147 SMIM9A6NGZ8 99 aa7.94□□□□□ -1.14
CLN3-244ENST00000636147 PRR3P79522 188 aaKnown RBP7.94□□□□□ -1.14
CLN3-244ENST00000636147 LINC00337Q8N6G1 96 aa7.94□□□□□ -1.14
CLN3-244ENST00000636147 HRCT1Q6UXD1 115 aa7.93□□□□□ -1.14
CLN3-244ENST00000636147 C1orf43Q9BWL3 253 aa7.93□□□□□ -1.14
CLN3-244ENST00000636147 CCL24O00175 119 aa7.93□□□□□ -1.14
CLN3-244ENST00000636147 DEFB114Q30KQ6 69 aa7.93□□□□□ -1.14
CLN3-244ENST00000636147 CSDC2Q9Y534 153 aaKnown RBP7.93□□□□□ -1.14
CLN3-244ENST00000636147 JMJD7-PLA2G4BH0Y9G9 81 aa7.92□□□□□ -1.14
CLN3-244ENST00000636147 SCXQ7RTU7 201 aa7.92□□□□□ -1.14
CLN3-244ENST00000636147 LRRC75A-AS1Q8N1F1 130 aa7.92□□□□□ -1.14
CLN3-244ENST00000636147 UPK3BQ9BT76 320 aa7.92□□□□□ -1.14
CLN3-244ENST00000636147 WFDC11Q8NEX6 87 aa7.92□□□□□ -1.14
CLN3-244ENST00000636147 WFDC10AQ9H1F0 79 aa7.92□□□□□ -1.14
CLN3-244ENST00000636147 CSMD1Q96PZ7 3565 aa7.92□□□□□ -1.14
CLN3-244ENST00000636147 TRAV25A0A0B4J276 109 aa7.91□□□□□ -1.14
CLN3-244ENST00000636147 HILS1P60008 231 aa7.91□□□□□ -1.14
CLN3-244ENST00000636147 F8P00451 2351 aa7.91□□□□□ -1.14
CLN3-244ENST00000636147 RPL28P46779 137 aaKnown RBP7.91□□□□□ -1.14
CLN3-244ENST00000636147 KIR2DL5BQ8NHK3 375 aa7.91□□□□□ -1.14
CLN3-244ENST00000636147 DEFB4AO15263 64 aa7.9□□□□□ -1.14
CLN3-244ENST00000636147 TMEM256-PLSCR3K7ERE1 68 aa7.9□□□□□ -1.14
CLN3-244ENST00000636147 C6orf99Q4VX62 202 aa7.9□□□□□ -1.14
CLN3-244ENST00000636147 IBA57-AS1B1ANH7 110 aa7.9□□□□□ -1.15
CLN3-244ENST00000636147 TMEM258P61165 79 aa7.9□□□□□ -1.15
CLN3-244ENST00000636147 DAD1P61803 113 aa7.9□□□□□ -1.15
CLN3-244ENST00000636147 SNURFQ9Y675 71 aa7.9□□□□□ -1.15
CLN3-244ENST00000636147 IGLV4-60A0A075B6I1 120 aa7.89□□□□□ -1.15
CLN3-244ENST00000636147 FAM222AQ5U5X8 452 aa7.89□□□□□ -1.15
CLN3-244ENST00000636147 FAM19A1Q7Z5A9 133 aa7.89□□□□□ -1.15
CLN3-244ENST00000636147 LINC00269Q8N2A0 174 aa7.89□□□□□ -1.15
CLN3-244ENST00000636147 PLA2G2AP14555 144 aa7.88□□□□□ -1.15
CLN3-244ENST00000636147 IGLV5-39A0A0G2JS06 123 aa7.88□□□□□ -1.15
CLN3-244ENST00000636147 Q6JHZ5 121 aa7.88□□□□□ -1.15
CLN3-244ENST00000636147 Q96MF0 132 aa7.88□□□□□ -1.15
CLN3-244ENST00000636147 F5H768 121 aa7.88□□□□□ -1.15
CLN3-244ENST00000636147 C16orf74Q96GX8 76 aa7.88□□□□□ -1.15
CLN3-244ENST00000636147 J3QLI3 93 aa7.87□□□□□ -1.15
CLN3-244ENST00000636147 NTM-AS1Q6ZSK4 140 aa7.87□□□□□ -1.15
CLN3-244ENST00000636147 MRAPQ8TCY5 172 aa7.87□□□□□ -1.15
CLN3-244ENST00000636147 CHD6Q8TD26 2715 aa7.87□□□□□ -1.15
CLN3-244ENST00000636147 TRBV6-8A0A0A6YYG3 113 aa7.87□□□□□ -1.15
CLN3-244ENST00000636147 ODF3L2Q3SX64 289 aa7.87□□□□□ -1.15
CLN3-244ENST00000636147 ZNF702PQ9H963 129 aa7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 83.9 ms