RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 ZNF22P17026 224 aaPredicted RBP11.13□□□□□ -0.63
CPSF1-213ENST00000620219 Q9H8V8 135 aa11.13□□□□□ -0.63
CPSF1-213ENST00000620219 IGLV4-69A0A075B6H9 119 aa11.13□□□□□ -0.63
CPSF1-213ENST00000620219 TMEM238C9JI98 176 aa11.13□□□□□ -0.63
CPSF1-213ENST00000620219 LINC00269Q8N2A0 174 aa11.13□□□□□ -0.63
CPSF1-213ENST00000620219 OR13C6PQ8NH95 151 aa11.13□□□□□ -0.63
CPSF1-213ENST00000620219 SPCS1Q9Y6A9 102 aa11.13□□□□□ -0.63
CPSF1-213ENST00000620219 CEND1Q8N111 149 aa11.12□□□□□ -0.63
CPSF1-213ENST00000620219 MTURNQ8N3F0 131 aa11.12□□□□□ -0.63
CPSF1-213ENST00000620219 CBY1Q9Y3M2 126 aa11.12□□□□□ -0.63
CPSF1-213ENST00000620219 TEX48A0A1B0GUV7 120 aa11.11□□□□□ -0.63
CPSF1-213ENST00000620219 SPATA25Q9BR10 227 aa11.11□□□□□ -0.63
CPSF1-213ENST00000620219 CCL25O15444 150 aa11.11□□□□□ -0.63
CPSF1-213ENST00000620219 SAMD5Q5TGI4 173 aa11.11□□□□□ -0.63
CPSF1-213ENST00000620219 GTF2H5Q6ZYL4 71 aa11.11□□□□□ -0.63
CPSF1-213ENST00000620219 SIVA1O15304 175 aa11.1□□□□□ -0.63
CPSF1-213ENST00000620219 KPRPQ5T749 579 aaPredicted RBP11.1□□□□□ -0.63
CPSF1-213ENST00000620219 LEPROTO15243 131 aa11.1□□□□□ -0.63
CPSF1-213ENST00000620219 RBX1P62877 108 aa11.1□□□□□ -0.63
CPSF1-213ENST00000620219 NTM-AS1Q6ZSK4 140 aa11.1□□□□□ -0.63
CPSF1-213ENST00000620219 TSPEAR-AS2P59090 65 aa11.09□□□□□ -0.63
CPSF1-213ENST00000620219 PYGO1Q9Y3Y4 419 aa11.09□□□□□ -0.63
CPSF1-213ENST00000620219 IGLV4-60A0A075B6I1 120 aa11.09□□□□□ -0.63
CPSF1-213ENST00000620219 RPL24P83731 157 aaKnown RBP11.09□□□□□ -0.63
CPSF1-213ENST00000620219 PGPEP1Q9NXJ5 209 aa11.08□□□□□ -0.64
CPSF1-213ENST00000620219 PLAC8L1A1L4L8 177 aa11.08□□□□□ -0.64
CPSF1-213ENST00000620219 SBSPONQ8IVN8 264 aa11.08□□□□□ -0.64
CPSF1-213ENST00000620219 PTH2Q96A98 100 aa11.08□□□□□ -0.64
CPSF1-213ENST00000620219 FBN1P35555 2871 aaKnown RBP11.08□□□□□ -0.64
CPSF1-213ENST00000620219 UBE2V1Q13404 147 aa11.07□□□□□ -0.64
CPSF1-213ENST00000620219 MDFIQ99750 246 aa11.07□□□□□ -0.64
CPSF1-213ENST00000620219 IGKV2D-24A0A075B6R9 120 aa11.07□□□□□ -0.64
CPSF1-213ENST00000620219 IGHV1-58A0A0C4DH39 117 aa11.06□□□□□ -0.64
CPSF1-213ENST00000620219 C12orf74Q32Q52 190 aa11.06□□□□□ -0.64
CPSF1-213ENST00000620219 CDC42SE2Q9NRR3 84 aa11.06□□□□□ -0.64
CPSF1-213ENST00000620219 TINCRA0A1B0GVN0 87 aa11.05□□□□□ -0.64
CPSF1-213ENST00000620219 Q8NAQ8 132 aa11.05□□□□□ -0.64
CPSF1-213ENST00000620219 TMEM223A0PJW6 202 aa11.05□□□□□ -0.64
CPSF1-213ENST00000620219 C9orf118A6NHY6 69 aa11.05□□□□□ -0.64
CPSF1-213ENST00000620219 UFSP1Q6NVU6 142 aa11.05□□□□□ -0.64
CPSF1-213ENST00000620219 C21orf62-AS1Q17RA5 79 aa11.05□□□□□ -0.64
CPSF1-213ENST00000620219 REG3AQ06141 175 aa11.04□□□□□ -0.64
CPSF1-213ENST00000620219 HIGD1BQ9P298 99 aa11.04□□□□□ -0.64
CPSF1-213ENST00000620219 COX6A2Q02221 97 aa11.04□□□□□ -0.64
CPSF1-213ENST00000620219 ANK3Q12955 4377 aaKnown RBP11.03□□□□□ -0.64
CPSF1-213ENST00000620219 SH2D6Q7Z4S9 175 aa11.03□□□□□ -0.64
CPSF1-213ENST00000620219 UBE2D1P51668 147 aa11.03□□□□□ -0.64
CPSF1-213ENST00000620219 CCL18P55774 89 aa11.02□□□□□ -0.64
CPSF1-213ENST00000620219 LINC00242Q5T6M2 205 aa11.02□□□□□ -0.64
CPSF1-213ENST00000620219 LINC00526Q96FQ7 95 aa11.02□□□□□ -0.64
CPSF1-213ENST00000620219 MUSTN1Q8IVN3 82 aa11.02□□□□□ -0.65
CPSF1-213ENST00000620219 TRRAPQ9Y4A5 3859 aa11.02□□□□□ -0.65
CPSF1-213ENST00000620219 COX7A2LO14548 114 aa11.01□□□□□ -0.65
CPSF1-213ENST00000620219 LYRM7Q5U5X0 104 aa11.01□□□□□ -0.65
CPSF1-213ENST00000620219 AKAP9Q99996 3911 aa11.01□□□□□ -0.65
CPSF1-213ENST00000620219 ZNF561-AS1K7EIQ3 104 aa11.01□□□□□ -0.65
CPSF1-213ENST00000620219 NFE4Q86UQ8 179 aa11.01□□□□□ -0.65
CPSF1-213ENST00000620219 ERG28Q9UKR5 140 aa11.01□□□□□ -0.65
CPSF1-213ENST00000620219 COX6CP09669 75 aa11.01□□□□□ -0.65
CPSF1-213ENST00000620219 Q8N3U1 123 aa11.01□□□□□ -0.65
CPSF1-213ENST00000620219 COX7B2Q8TF08 81 aa11.01□□□□□ -0.65
CPSF1-213ENST00000620219 A4D1N5 150 aa11□□□□□ -0.65
CPSF1-213ENST00000620219 MRPS36P82909 103 aaKnown RBP11□□□□□ -0.65
CPSF1-213ENST00000620219 CHCHD10Q8WYQ3 142 aaPredicted RBP11□□□□□ -0.65
CPSF1-213ENST00000620219 C1orf43Q9BWL3 253 aa11□□□□□ -0.65
CPSF1-213ENST00000620219 A0A1W2PPM0 123 aa11□□□□□ -0.65
CPSF1-213ENST00000620219 PSCAO43653 123 aa10.99□□□□□ -0.65
CPSF1-213ENST00000620219 IL17DQ8TAD2 202 aa10.99□□□□□ -0.65
CPSF1-213ENST00000620219 AMELXQ99217 191 aa10.99□□□□□ -0.65
CPSF1-213ENST00000620219 GAGE12HA6NDE8 117 aa10.99□□□□□ -0.65
CPSF1-213ENST00000620219 A0A0J9YXY3 114 aa10.99□□□□□ -0.65
CPSF1-213ENST00000620219 COPS9Q8WXC6 57 aa10.99□□□□□ -0.65
CPSF1-213ENST00000620219 VPS25Q9BRG1 176 aa10.99□□□□□ -0.65
CPSF1-213ENST00000620219 PKD1L1Q8TDX9 2849 aa10.98□□□□□ -0.65
CPSF1-213ENST00000620219 LINC00959A0A1B0GUT2 108 aa10.98□□□□□ -0.65
CPSF1-213ENST00000620219 H3BMG7 143 aa10.98□□□□□ -0.65
CPSF1-213ENST00000620219 TAL2Q16559 108 aa10.97□□□□□ -0.65
CPSF1-213ENST00000620219 LELP1Q5T871 98 aa10.97□□□□□ -0.65
CPSF1-213ENST00000620219 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.96□□□□□ -0.65
CPSF1-213ENST00000620219 EDA2RQ9HAV5 297 aa10.96□□□□□ -0.65
CPSF1-213ENST00000620219 TRAV10A0A0B4J240 114 aa10.96□□□□□ -0.65
CPSF1-213ENST00000620219 H7C423 109 aa10.96□□□□□ -0.65
CPSF1-213ENST00000620219 TIRAPP58753 221 aa10.96□□□□□ -0.65
CPSF1-213ENST00000620219 HIGD2BQ4VC39 106 aa10.96□□□□□ -0.65
CPSF1-213ENST00000620219 C10orf126Q8N4M7 172 aa10.96□□□□□ -0.65
CPSF1-213ENST00000620219 TM2D2Q9BX73 214 aa10.96□□□□□ -0.66
CPSF1-213ENST00000620219 DPH3Q96FX2 82 aa10.96□□□□□ -0.66
CPSF1-213ENST00000620219 K7EIL1 84 aa10.95□□□□□ -0.66
CPSF1-213ENST00000620219 C2orf82Q6UX34 121 aa10.95□□□□□ -0.66
CPSF1-213ENST00000620219 WFDC10BQ8IUB3 73 aa10.95□□□□□ -0.66
CPSF1-213ENST00000620219 PRO1854Q9UHT4 67 aa10.94□□□□□ -0.66
CPSF1-213ENST00000620219 SPAG11BQ08648 103 aa10.93□□□□□ -0.66
CPSF1-213ENST00000620219 MIR7-3HGQ8N6C7 128 aa10.93□□□□□ -0.66
CPSF1-213ENST00000620219 K7EP34 96 aa10.93□□□□□ -0.66
CPSF1-213ENST00000620219 A0A1B0GWB2 263 aa10.92□□□□□ -0.66
CPSF1-213ENST00000620219 LYPD5Q6UWN5 251 aa10.92□□□□□ -0.66
CPSF1-213ENST00000620219 PCP4P48539 62 aa10.91□□□□□ -0.66
CPSF1-213ENST00000620219 SMIM1B2RUZ4 78 aa10.91□□□□□ -0.66
CPSF1-213ENST00000620219 RPL13AP40429 203 aaKnown RBP10.91□□□□□ -0.66
CPSF1-213ENST00000620219 CAMK2N2Q96S95 79 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms