RNA–Protein interactions for RNA: ENST00000601444.2

SSBP4-210, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 5

Gene SSBP4, Length 427 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-210ENST00000601444 AMELXQ99217 191 aa12.92□□□□□ -0.34
SSBP4-210ENST00000601444 IGHV3OR16-9A0A0B4J2B5 98 aa12.91□□□□□ -0.34
SSBP4-210ENST00000601444 G0S2P27469 103 aa12.91□□□□□ -0.34
SSBP4-210ENST00000601444 UBE2D1P51668 147 aa12.91□□□□□ -0.34
SSBP4-210ENST00000601444 LINC00242Q5T6M2 205 aa12.91□□□□□ -0.34
SSBP4-210ENST00000601444 SDIM1Q6ZPB5 146 aa12.91□□□□□ -0.34
SSBP4-210ENST00000601444 VCX2Q9H322 139 aa12.91□□□□□ -0.34
SSBP4-210ENST00000601444 Q6ZN92 141 aa12.9□□□□□ -0.34
SSBP4-210ENST00000601444 SCGB3A1Q96QR1 104 aa12.9□□□□□ -0.34
SSBP4-210ENST00000601444 TIMM17AQ99595 171 aa12.9□□□□□ -0.34
SSBP4-210ENST00000601444 FAT1Q14517 4588 aa12.89□□□□□ -0.35
SSBP4-210ENST00000601444 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.89□□□□□ -0.35
SSBP4-210ENST00000601444 PANO1I0J062 215 aa12.89□□□□□ -0.35
SSBP4-210ENST00000601444 NPSP0C0P6 89 aa12.89□□□□□ -0.35
SSBP4-210ENST00000601444 ERASQ7Z444 233 aa12.89□□□□□ -0.35
SSBP4-210ENST00000601444 LINC00614P0C842 121 aa12.88□□□□□ -0.35
SSBP4-210ENST00000601444 SCXQ7RTU7 201 aa12.88□□□□□ -0.35
SSBP4-210ENST00000601444 C2orf88Q9BSF0 95 aa12.88□□□□□ -0.35
SSBP4-210ENST00000601444 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.88□□□□□ -0.35
SSBP4-210ENST00000601444 IGLV4-69A0A075B6H9 119 aa12.87□□□□□ -0.35
SSBP4-210ENST00000601444 IGHV3-64A0A075B6Q5 118 aa12.87□□□□□ -0.35
SSBP4-210ENST00000601444 A0A096LNJ9 63 aa12.87□□□□□ -0.35
SSBP4-210ENST00000601444 ZNF561-AS1K7EIQ3 104 aa12.87□□□□□ -0.35
SSBP4-210ENST00000601444 CHAC1Q9BUX1 264 aa12.87□□□□□ -0.35
SSBP4-210ENST00000601444 PMCHL1Q16048 86 aa12.86□□□□□ -0.35
SSBP4-210ENST00000601444 CIRBP-AS1Q8TBR5 109 aa12.86□□□□□ -0.35
SSBP4-210ENST00000601444 COLCA2A8K830 154 aa12.85□□□□□ -0.35
SSBP4-210ENST00000601444 SCO1O75880 301 aa12.85□□□□□ -0.35
SSBP4-210ENST00000601444 TRGC2P03986 189 aa12.85□□□□□ -0.35
SSBP4-210ENST00000601444 APOMO95445 188 aa12.84□□□□□ -0.35
SSBP4-210ENST00000601444 CHTF8P0CG12 524 aa12.84□□□□□ -0.35
SSBP4-210ENST00000601444 A0A087WZ39 114 aa12.83□□□□□ -0.36
SSBP4-210ENST00000601444 SPAG11BQ08648 103 aa12.83□□□□□ -0.36
SSBP4-210ENST00000601444 SYCNQ0VAF6 134 aa12.83□□□□□ -0.36
SSBP4-210ENST00000601444 PAPPA-AS1Q5QFB9 102 aa12.83□□□□□ -0.36
SSBP4-210ENST00000601444 ORAOV1Q8WV07 137 aa12.83□□□□□ -0.36
SSBP4-210ENST00000601444 CARD19Q96LW7 228 aa12.83□□□□□ -0.36
SSBP4-210ENST00000601444 Q6ZRU5 148 aa12.82□□□□□ -0.36
SSBP4-210ENST00000601444 FAM19A3Q7Z5A8 133 aa12.82□□□□□ -0.36
SSBP4-210ENST00000601444 A0A0J9YXV3 536 aa12.81□□□□□ -0.36
SSBP4-210ENST00000601444 LINC01549A6NIU2 74 aa12.81□□□□□ -0.36
SSBP4-210ENST00000601444 EPM2AB3EWF7 344 aa12.81□□□□□ -0.36
SSBP4-210ENST00000601444 RAB5BP61020 215 aa12.81□□□□□ -0.36
SSBP4-210ENST00000601444 Q5VSD8 79 aa12.81□□□□□ -0.36
SSBP4-210ENST00000601444 OR10D4PQ8NGN7 298 aa12.81□□□□□ -0.36
SSBP4-210ENST00000601444 CAMK2N2Q96S95 79 aa12.8□□□□□ -0.36
SSBP4-210ENST00000601444 CST9LQ9H4G1 147 aa12.8□□□□□ -0.36
SSBP4-210ENST00000601444 ABCA13Q86UQ4 5058 aa12.8□□□□□ -0.36
SSBP4-210ENST00000601444 HBDP02042 147 aa12.79□□□□□ -0.36
SSBP4-210ENST00000601444 PDZD11Q5EBL8 140 aa12.79□□□□□ -0.36
SSBP4-210ENST00000601444 C2orf48Q96LS8 159 aa12.79□□□□□ -0.36
SSBP4-210ENST00000601444 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.78□□□□□ -0.36
SSBP4-210ENST00000601444 CIRBPQ14011 172 aaKnown RBP12.78□□□□□ -0.36
SSBP4-210ENST00000601444 CDKN2A-AS1Q9UH64 79 aa12.78□□□□□ -0.36
SSBP4-210ENST00000601444 A0A096LNI7 61 aa12.77□□□□□ -0.37
SSBP4-210ENST00000601444 IGKV2-24A0A0C4DH68 120 aa12.77□□□□□ -0.37
SSBP4-210ENST00000601444 HERVK_113P63121 156 aa12.77□□□□□ -0.37
SSBP4-210ENST00000601444 KIAA0087Q14695 138 aa12.77□□□□□ -0.37
SSBP4-210ENST00000601444 PMVKQ15126 192 aa12.77□□□□□ -0.37
SSBP4-210ENST00000601444 DPH3Q96FX2 82 aa12.77□□□□□ -0.37
SSBP4-210ENST00000601444 C10orf25Q5T742 122 aa12.76□□□□□ -0.37
SSBP4-210ENST00000601444 LINC00528Q8N1L1 170 aa12.76□□□□□ -0.37
SSBP4-210ENST00000601444 SPACA4Q8TDM5 124 aa12.76□□□□□ -0.37
SSBP4-210ENST00000601444 CHCHD1Q96BP2 118 aaKnown RBP12.76□□□□□ -0.37
SSBP4-210ENST00000601444 GEMIN7Q9H840 131 aaKnown RBP12.76□□□□□ -0.37
SSBP4-210ENST00000601444 PCLOQ9Y6V0 5065 aa12.75□□□□□ -0.37
SSBP4-210ENST00000601444 FAM229AH3BQW9 127 aa12.75□□□□□ -0.37
SSBP4-210ENST00000601444 NDUFA6P56556 154 aa12.75□□□□□ -0.37
SSBP4-210ENST00000601444 SEC11AP67812 179 aa12.75□□□□□ -0.37
SSBP4-210ENST00000601444 BAGE3Q86Y29 109 aa12.75□□□□□ -0.37
SSBP4-210ENST00000601444 LINC01561Q8N1V8 128 aa12.75□□□□□ -0.37
SSBP4-210ENST00000601444 VPS13BQ7Z7G8 4022 aa12.74□□□□□ -0.37
SSBP4-210ENST00000601444 A0A087WYN8 130 aa12.74□□□□□ -0.37
SSBP4-210ENST00000601444 TINCRA0A1B0GVN0 87 aa12.74□□□□□ -0.37
SSBP4-210ENST00000601444 UNQ6190/PRO20217Q6UXQ8 127 aa12.74□□□□□ -0.37
SSBP4-210ENST00000601444 MAJINQ3KP22 176 aa12.73□□□□□ -0.37
SSBP4-210ENST00000601444 C2orf82Q6UX34 121 aa12.73□□□□□ -0.37
SSBP4-210ENST00000601444 FAM19A2Q8N3H0 131 aa12.73□□□□□ -0.37
SSBP4-210ENST00000601444 LINC00469Q8N7U9 141 aa12.73□□□□□ -0.37
SSBP4-210ENST00000601444 LINC00310P59036 64 aa12.72□□□□□ -0.37
SSBP4-210ENST00000601444 NDUFA1O15239 70 aa12.71□□□□□ -0.37
SSBP4-210ENST00000601444 ATP5LO75964 103 aa12.71□□□□□ -0.37
SSBP4-210ENST00000601444 MRPL35Q9NZE8 188 aaKnown RBP12.71□□□□□ -0.37
SSBP4-210ENST00000601444 TOMM7Q9P0U1 55 aa12.71□□□□□ -0.37
SSBP4-210ENST00000601444 C6orf48Q9UBA6 75 aa12.71□□□□□ -0.37
SSBP4-210ENST00000601444 IGLV5-45A0A087WSX0 123 aa12.7□□□□□ -0.38
SSBP4-210ENST00000601444 LOC107984640A0A0U1RRK4 108 aa12.7□□□□□ -0.38
SSBP4-210ENST00000601444 F8WDY8 70 aa12.7□□□□□ -0.38
SSBP4-210ENST00000601444 NUPR1O60356 82 aa12.7□□□□□ -0.38
SSBP4-210ENST00000601444 HSBP1O75506 76 aa12.7□□□□□ -0.38
SSBP4-210ENST00000601444 SERF1AO75920 110 aa12.7□□□□□ -0.38
SSBP4-210ENST00000601444 GAGE2BQ13066 116 aa12.7□□□□□ -0.38
SSBP4-210ENST00000601444 PACRGQ96M98 296 aaPredicted RBP12.7□□□□□ -0.38
SSBP4-210ENST00000601444 RNF151Q2KHN1 245 aa12.69□□□□□ -0.38
SSBP4-210ENST00000601444 SMIM1B2RUZ4 78 aa12.68□□□□□ -0.38
SSBP4-210ENST00000601444 IGLC3P0DOY3 106 aa12.68□□□□□ -0.38
SSBP4-210ENST00000601444 PTTG1IPP53801 180 aa12.68□□□□□ -0.38
SSBP4-210ENST00000601444 STPG4Q8N801 248 aa12.68□□□□□ -0.38
SSBP4-210ENST00000601444 PLAC8Q9NZF1 115 aa12.68□□□□□ -0.38
SSBP4-210ENST00000601444 PRSS2P07478 247 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms