RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 K7EMI3 77 aa12.82□□□□□ -0.36
SS18-218ENST00000581021 KRTAP10-4P60372 401 aaPredicted RBP12.82□□□□□ -0.36
SS18-218ENST00000581021 COX6A2Q02221 97 aa12.82□□□□□ -0.36
SS18-218ENST00000581021 PRSS3P2Q8NHM4 247 aa12.82□□□□□ -0.36
SS18-218ENST00000581021 IGLV4-69A0A075B6H9 119 aa12.81□□□□□ -0.36
SS18-218ENST00000581021 SNAPINO95295 136 aa12.81□□□□□ -0.36
SS18-218ENST00000581021 MT-ND6P03923 174 aa12.81□□□□□ -0.36
SS18-218ENST00000581021 MALP21145 153 aa12.81□□□□□ -0.36
SS18-218ENST00000581021 TMEM141Q96I45 108 aa12.81□□□□□ -0.36
SS18-218ENST00000581021 FLG2Q5D862 2391 aaPredicted RBP12.8□□□□□ -0.36
SS18-218ENST00000581021 INAFM2P0DMQ5 153 aa12.8□□□□□ -0.36
SS18-218ENST00000581021 FABP9Q0Z7S8 132 aa12.8□□□□□ -0.36
SS18-218ENST00000581021 NDUFA5Q16718 116 aa12.8□□□□□ -0.36
SS18-218ENST00000581021 COX19Q49B96 90 aa12.8□□□□□ -0.36
SS18-218ENST00000581021 LINC00242Q5T6M2 205 aa12.8□□□□□ -0.36
SS18-218ENST00000581021 SPACA4Q8TDM5 124 aa12.8□□□□□ -0.36
SS18-218ENST00000581021 YPEL4Q96NS1 127 aa12.8□□□□□ -0.36
SS18-218ENST00000581021 LINC01546A6NGU7 62 aa12.79□□□□□ -0.36
SS18-218ENST00000581021 CARD19Q96LW7 228 aa12.79□□□□□ -0.36
SS18-218ENST00000581021 AMELXQ99217 191 aa12.79□□□□□ -0.36
SS18-218ENST00000581021 ZNF561-AS1K7EIQ3 104 aa12.78□□□□□ -0.36
SS18-218ENST00000581021 UBE2D1P51668 147 aa12.78□□□□□ -0.36
SS18-218ENST00000581021 A0A096LNI7 61 aa12.77□□□□□ -0.37
SS18-218ENST00000581021 SYCNQ0VAF6 134 aa12.77□□□□□ -0.37
SS18-218ENST00000581021 Q6ZRU5 148 aa12.77□□□□□ -0.37
SS18-218ENST00000581021 SLC7A5P1Q8MH63 180 aa12.77□□□□□ -0.37
SS18-218ENST00000581021 TOMM6Q96B49 74 aa12.77□□□□□ -0.37
SS18-218ENST00000581021 A0A087WYN8 130 aa12.76□□□□□ -0.37
SS18-218ENST00000581021 SPAG11BQ08648 103 aa12.76□□□□□ -0.37
SS18-218ENST00000581021 TEX43Q6ZNM6 134 aa12.76□□□□□ -0.37
SS18-218ENST00000581021 IGKV2-24A0A0C4DH68 120 aa12.75□□□□□ -0.37
SS18-218ENST00000581021 URB1-AS1Q96HZ7 61 aa12.75□□□□□ -0.37
SS18-218ENST00000581021 PLA2G1BP04054 148 aaKnown RBP12.74□□□□□ -0.37
SS18-218ENST00000581021 NPSP0C0P6 89 aa12.74□□□□□ -0.37
SS18-218ENST00000581021 ORAOV1Q8WV07 137 aa12.74□□□□□ -0.37
SS18-218ENST00000581021 TIMM17AQ99595 171 aa12.74□□□□□ -0.37
SS18-218ENST00000581021 TRAPPC1Q9Y5R8 145 aa12.74□□□□□ -0.37
SS18-218ENST00000581021 A0A087WZ39 114 aa12.73□□□□□ -0.37
SS18-218ENST00000581021 APOMO95445 188 aa12.73□□□□□ -0.37
SS18-218ENST00000581021 Q6ZN92 141 aa12.73□□□□□ -0.37
SS18-218ENST00000581021 OR10D4PQ8NGN7 298 aa12.73□□□□□ -0.37
SS18-218ENST00000581021 C2orf48Q96LS8 159 aa12.73□□□□□ -0.37
SS18-218ENST00000581021 VCX2Q9H322 139 aa12.73□□□□□ -0.37
SS18-218ENST00000581021 CBLN2Q8IUK8 224 aa12.72□□□□□ -0.37
SS18-218ENST00000581021 C18orf32Q8TCD1 76 aa12.72□□□□□ -0.37
SS18-218ENST00000581021 CAMK2N2Q96S95 79 aa12.72□□□□□ -0.37
SS18-218ENST00000581021 C2orf88Q9BSF0 95 aa12.72□□□□□ -0.37
SS18-218ENST00000581021 PLAC8Q9NZF1 115 aa12.72□□□□□ -0.37
SS18-218ENST00000581021 MAJINQ3KP22 176 aa12.71□□□□□ -0.37
SS18-218ENST00000581021 A0A096LNJ9 63 aa12.7□□□□□ -0.38
SS18-218ENST00000581021 KIAA0087Q14695 138 aa12.7□□□□□ -0.38
SS18-218ENST00000581021 C10orf25Q5T742 122 aa12.7□□□□□ -0.38
SS18-218ENST00000581021 FA2HQ7L5A8 372 aa12.7□□□□□ -0.38
SS18-218ENST00000581021 ERASQ7Z444 233 aa12.7□□□□□ -0.38
SS18-218ENST00000581021 FAM19A3Q7Z5A8 133 aa12.7□□□□□ -0.38
SS18-218ENST00000581021 SCGB3A1Q96QR1 104 aa12.7□□□□□ -0.38
SS18-218ENST00000581021 PKHD1L1Q86WI1 4243 aa12.7□□□□□ -0.38
SS18-218ENST00000581021 A0A0J9YXV3 536 aa12.69□□□□□ -0.38
SS18-218ENST00000581021 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.69□□□□□ -0.38
SS18-218ENST00000581021 G0S2P27469 103 aa12.68□□□□□ -0.38
SS18-218ENST00000581021 DPH3Q96FX2 82 aa12.68□□□□□ -0.38
SS18-218ENST00000581021 HNRNPA3P51991 378 aaKnown RBP12.67□□□□□ -0.38
SS18-218ENST00000581021 RPL37AP61513 92 aaKnown RBP12.67□□□□□ -0.38
SS18-218ENST00000581021 STPG4Q8N801 248 aa12.67□□□□□ -0.38
SS18-218ENST00000581021 SMCO4Q9NRQ5 59 aa12.67□□□□□ -0.38
SS18-218ENST00000581021 PTTG1IPP53801 180 aa12.66□□□□□ -0.38
SS18-218ENST00000581021 UNQ6190/PRO20217Q6UXQ8 127 aa12.66□□□□□ -0.38
SS18-218ENST00000581021 LRP1Q07954 4544 aaKnown RBP12.66□□□□□ -0.38
SS18-218ENST00000581021 LOC107984640A0A0U1RRK4 108 aa12.65□□□□□ -0.38
SS18-218ENST00000581021 PAPPA-AS1Q5QFB9 102 aa12.65□□□□□ -0.38
SS18-218ENST00000581021 MRPL35Q9NZE8 188 aaKnown RBP12.65□□□□□ -0.38
SS18-218ENST00000581021 C6orf48Q9UBA6 75 aa12.65□□□□□ -0.38
SS18-218ENST00000581021 CDKN2A-AS1Q9UH64 79 aa12.65□□□□□ -0.38
SS18-218ENST00000581021 HERC1Q15751 4861 aa12.64□□□□□ -0.39
SS18-218ENST00000581021 GAGE2BQ13066 116 aa12.64□□□□□ -0.39
SS18-218ENST00000581021 PMCHL1Q16048 86 aa12.64□□□□□ -0.39
SS18-218ENST00000581021 LINC01561Q8N1V8 128 aa12.64□□□□□ -0.39
SS18-218ENST00000581021 DMBT1Q9UGM3 2413 aaPredicted RBP12.64□□□□□ -0.39
SS18-218ENST00000581021 NDUFA1O15239 70 aa12.63□□□□□ -0.39
SS18-218ENST00000581021 LINC00614P0C842 121 aa12.63□□□□□ -0.39
SS18-218ENST00000581021 RNF151Q2KHN1 245 aa12.63□□□□□ -0.39
SS18-218ENST00000581021 C2orf82Q6UX34 121 aa12.63□□□□□ -0.39
SS18-218ENST00000581021 CST9LQ9H4G1 147 aa12.63□□□□□ -0.39
SS18-218ENST00000581021 LINC00474Q9P2X8 69 aa12.62□□□□□ -0.39
SS18-218ENST00000581021 PKIGQ9Y2B9 76 aa12.62□□□□□ -0.39
SS18-218ENST00000581021 FAT3Q8TDW7 4589 aa12.62□□□□□ -0.39
SS18-218ENST00000581021 F8WDY8 70 aa12.61□□□□□ -0.39
SS18-218ENST00000581021 HERVK_113P63121 156 aa12.61□□□□□ -0.39
SS18-218ENST00000581021 RPL18AQ02543 176 aaKnown RBP12.61□□□□□ -0.39
SS18-218ENST00000581021 A0A1W2PNN7 141 aa12.6□□□□□ -0.39
SS18-218ENST00000581021 LINC01549A6NIU2 74 aa12.6□□□□□ -0.39
SS18-218ENST00000581021 GEMIN7Q9H840 131 aaKnown RBP12.6□□□□□ -0.39
SS18-218ENST00000581021 IGLV5-45A0A087WSX0 123 aa12.59□□□□□ -0.39
SS18-218ENST00000581021 HBDP02042 147 aa12.59□□□□□ -0.39
SS18-218ENST00000581021 PMVKQ15126 192 aa12.59□□□□□ -0.39
SS18-218ENST00000581021 PDZD11Q5EBL8 140 aa12.59□□□□□ -0.39
SS18-218ENST00000581021 TINCRA0A1B0GVN0 87 aa12.58□□□□□ -0.4
SS18-218ENST00000581021 SEC11AP67812 179 aa12.58□□□□□ -0.4
SS18-218ENST00000581021 Q6ZRP5 223 aa12.58□□□□□ -0.4
SS18-218ENST00000581021 LINC00469Q8N7U9 141 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 805.8 ms