RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 LYSTQ99698 3801 aa7.21□□□□□ -1.26
SS18-213ENST00000579640 KRTAP1-5Q9BYS1 174 aa7.21□□□□□ -1.26
SS18-213ENST00000579640 COX11Q9Y6N1 276 aa7.21□□□□□ -1.26
SS18-213ENST00000579640 IGLV10-54A0A075B6I4 117 aa7.2□□□□□ -1.26
SS18-213ENST00000579640 IGLV5-45A0A087WSX0 123 aa7.2□□□□□ -1.26
SS18-213ENST00000579640 C11orf86A6NJI1 115 aa7.2□□□□□ -1.26
SS18-213ENST00000579640 XCL1P47992 114 aa7.2□□□□□ -1.26
SS18-213ENST00000579640 PMCHL2Q9BQD1 86 aa7.2□□□□□ -1.26
SS18-213ENST00000579640 Q9HAA7 133 aa7.2□□□□□ -1.26
SS18-213ENST00000579640 IGKV2D-24A0A075B6R9 120 aa7.2□□□□□ -1.26
SS18-213ENST00000579640 Q6ZR54 194 aa7.2□□□□□ -1.26
SS18-213ENST00000579640 TM2D2Q9BX73 214 aa7.2□□□□□ -1.26
SS18-213ENST00000579640 IGHV3OR16-9A0A0B4J2B5 98 aa7.19□□□□□ -1.26
SS18-213ENST00000579640 H3BRM9 83 aa7.19□□□□□ -1.26
SS18-213ENST00000579640 COX6A2Q02221 97 aa7.19□□□□□ -1.26
SS18-213ENST00000579640 LINC01561Q8N1V8 128 aa7.19□□□□□ -1.26
SS18-213ENST00000579640 LINC00469Q8N7U9 141 aa7.19□□□□□ -1.26
SS18-213ENST00000579640 LCE6AA0A183 80 aa7.18□□□□□ -1.26
SS18-213ENST00000579640 GAGE12HA6NDE8 117 aa7.18□□□□□ -1.26
SS18-213ENST00000579640 ZNF22P17026 224 aaPredicted RBP7.18□□□□□ -1.26
SS18-213ENST00000579640 FOXI1Q12951 378 aa7.18□□□□□ -1.26
SS18-213ENST00000579640 TMEM170BQ5T4T1 132 aa7.18□□□□□ -1.26
SS18-213ENST00000579640 A0A087WZ39 114 aa7.17□□□□□ -1.26
SS18-213ENST00000579640 PYY3Q5JQD4 70 aa7.17□□□□□ -1.26
SS18-213ENST00000579640 KRTAP26-1Q6PEX3 210 aa7.17□□□□□ -1.26
SS18-213ENST00000579640 CDKN2A-AS1Q9UH64 79 aa7.17□□□□□ -1.26
SS18-213ENST00000579640 DNAH6Q9C0G6 4158 aa7.17□□□□□ -1.26
SS18-213ENST00000579640 DNAH1Q9P2D7 4330 aa7.17□□□□□ -1.26
SS18-213ENST00000579640 M0R2N4 97 aa7.17□□□□□ -1.26
SS18-213ENST00000579640 COX7A2LO14548 114 aa7.17□□□□□ -1.26
SS18-213ENST00000579640 HERVK_113P61574 105 aa7.16□□□□□ -1.26
SS18-213ENST00000579640 C5orf38Q86SI9 138 aa7.16□□□□□ -1.26
SS18-213ENST00000579640 TMEM223A0PJW6 202 aa7.15□□□□□ -1.26
SS18-213ENST00000579640 APOMO95445 188 aa7.15□□□□□ -1.26
SS18-213ENST00000579640 MALP21145 153 aa7.15□□□□□ -1.26
SS18-213ENST00000579640 ATOH7Q8N100 152 aa7.15□□□□□ -1.26
SS18-213ENST00000579640 C6orf223Q8N319 242 aa7.15□□□□□ -1.26
SS18-213ENST00000579640 HSBP1L1C9JCN9 74 aa7.15□□□□□ -1.27
SS18-213ENST00000579640 SMIM6P0DI80 62 aa7.15□□□□□ -1.27
SS18-213ENST00000579640 PSCAO43653 123 aa7.14□□□□□ -1.27
SS18-213ENST00000579640 C1orf134Q5TEV5 83 aa7.14□□□□□ -1.27
SS18-213ENST00000579640 CFAP161Q6P656 301 aa7.14□□□□□ -1.27
SS18-213ENST00000579640 IGHV1-58A0A0C4DH39 117 aa7.13□□□□□ -1.27
SS18-213ENST00000579640 SMIM1B2RUZ4 78 aa7.13□□□□□ -1.27
SS18-213ENST00000579640 SPINK8P0C7L1 97 aa7.13□□□□□ -1.27
SS18-213ENST00000579640 Q6ZRN7 208 aaPredicted RBP7.13□□□□□ -1.27
SS18-213ENST00000579640 IGHV3-64A0A075B6Q5 118 aa7.13□□□□□ -1.27
SS18-213ENST00000579640 IGLV5-39A0A0G2JS06 123 aa7.13□□□□□ -1.27
SS18-213ENST00000579640 E9PLD3 99 aa7.13□□□□□ -1.27
SS18-213ENST00000579640 STPG4Q8N801 248 aa7.13□□□□□ -1.27
SS18-213ENST00000579640 hDV102S1A0JD36 115 aa7.12□□□□□ -1.27
SS18-213ENST00000579640 PLEKHB2Q96CS7 222 aa7.12□□□□□ -1.27
SS18-213ENST00000579640 VAMP8Q9BV40 100 aa7.12□□□□□ -1.27
SS18-213ENST00000579640 LEPROTO15243 131 aa7.11□□□□□ -1.27
SS18-213ENST00000579640 S100A12P80511 92 aa7.11□□□□□ -1.27
SS18-213ENST00000579640 MAPKAPK5-AS1Q8N8E1 139 aa7.11□□□□□ -1.27
SS18-213ENST00000579640 ORAOV1Q8WV07 137 aa7.11□□□□□ -1.27
SS18-213ENST00000579640 KMT2AQ03164 3969 aa7.11□□□□□ -1.27
SS18-213ENST00000579640 Q8IZM0 81 aa7.11□□□□□ -1.27
SS18-213ENST00000579640 PRSS2P07478 247 aa7.1□□□□□ -1.27
SS18-213ENST00000579640 MAJINQ3KP22 176 aa7.1□□□□□ -1.27
SS18-213ENST00000579640 C14orf177Q52M58 125 aa7.1□□□□□ -1.27
SS18-213ENST00000579640 ANKRD39Q53RE8 183 aa7.1□□□□□ -1.27
SS18-213ENST00000579640 C15orf56Q8N910 161 aa7.1□□□□□ -1.27
SS18-213ENST00000579640 COX7B2Q8TF08 81 aa7.1□□□□□ -1.27
SS18-213ENST00000579640 GVQW2A0A096LPI5 108 aaPredicted RBP7.09□□□□□ -1.27
SS18-213ENST00000579640 USP17L23D6RBM5 183 aa7.09□□□□□ -1.27
SS18-213ENST00000579640 SPAG11BQ08648 103 aa7.09□□□□□ -1.27
SS18-213ENST00000579640 CDPF1Q6NVV7 123 aa7.09□□□□□ -1.27
SS18-213ENST00000579640 TOMM7Q9P0U1 55 aa7.09□□□□□ -1.27
SS18-213ENST00000579640 PAM16Q9Y3D7 125 aa7.09□□□□□ -1.27
SS18-213ENST00000579640 F8WDY8 70 aa7.08□□□□□ -1.28
SS18-213ENST00000579640 J3QQQ9 107 aa7.08□□□□□ -1.28
SS18-213ENST00000579640 ZNF561-AS1K7EIQ3 104 aa7.08□□□□□ -1.28
SS18-213ENST00000579640 LGALS3P17931 250 aaKnown RBP7.08□□□□□ -1.28
SS18-213ENST00000579640 CXCL5P42830 114 aa7.08□□□□□ -1.28
SS18-213ENST00000579640 SPATA45Q537H7 98 aa7.08□□□□□ -1.28
SS18-213ENST00000579640 SFTA2Q6UW10 78 aa7.08□□□□□ -1.28
SS18-213ENST00000579640 NMUP48645 174 aa7.08□□□□□ -1.28
SS18-213ENST00000579640 KIAA0087Q14695 138 aa7.08□□□□□ -1.28
SS18-213ENST00000579640 C6orf226Q5I0X4 101 aa7.08□□□□□ -1.28
SS18-213ENST00000579640 IGKV2D-26A0A0A0MRZ7 120 aa7.07□□□□□ -1.28
SS18-213ENST00000579640 LRCOL1A6NCL2 159 aa7.07□□□□□ -1.28
SS18-213ENST00000579640 C2orf48Q96LS8 159 aa7.07□□□□□ -1.28
SS18-213ENST00000579640 TSPEAR-AS2P59090 65 aa7.06□□□□□ -1.28
SS18-213ENST00000579640 CKS1BP61024 79 aa7.06□□□□□ -1.28
SS18-213ENST00000579640 HIGD2BQ4VC39 106 aa7.06□□□□□ -1.28
SS18-213ENST00000579640 NTN5Q8WTR8 489 aaPredicted RBP7.06□□□□□ -1.28
SS18-213ENST00000579640 C12orf57Q99622 126 aa7.06□□□□□ -1.28
SS18-213ENST00000579640 LINC00518Q8N0U6 118 aa7.06□□□□□ -1.28
SS18-213ENST00000579640 NDUFA12Q9UI09 145 aa7.06□□□□□ -1.28
SS18-213ENST00000579640 SACSQ9NZJ4 4579 aa7.06□□□□□ -1.28
SS18-213ENST00000579640 A0A087WTM6 91 aa7.05□□□□□ -1.28
SS18-213ENST00000579640 MYMXA0A1B0GTQ4 84 aa7.05□□□□□ -1.28
SS18-213ENST00000579640 LECT2O14960 151 aa7.05□□□□□ -1.28
SS18-213ENST00000579640 NDUFA1O15239 70 aa7.05□□□□□ -1.28
SS18-213ENST00000579640 RTL8CO15255 209 aa7.05□□□□□ -1.28
SS18-213ENST00000579640 WFDC2Q14508 124 aa7.05□□□□□ -1.28
SS18-213ENST00000579640 EREGO14944 169 aa7.04□□□□□ -1.28
SS18-213ENST00000579640 COX8AP10176 69 aa7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms