RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 CSMD3Q7Z407 3707 aa9.25□□□□□ -0.93
CCDC40-209ENST00000573474 TRAV8-4A0A0B4J246 113 aa9.24□□□□□ -0.93
CCDC40-209ENST00000573474 E9PLD3 99 aa9.24□□□□□ -0.93
CCDC40-209ENST00000573474 K7EP13 123 aa9.24□□□□□ -0.93
CCDC40-209ENST00000573474 XCL1P47992 114 aa9.24□□□□□ -0.93
CCDC40-209ENST00000573474 MIAQ16674 131 aa9.24□□□□□ -0.93
CCDC40-209ENST00000573474 C10orf126Q8N4M7 172 aa9.24□□□□□ -0.93
CCDC40-209ENST00000573474 CHCHD10Q8WYQ3 142 aaPredicted RBP9.24□□□□□ -0.93
CCDC40-209ENST00000573474 PRO1933Q9H354 126 aa9.24□□□□□ -0.93
CCDC40-209ENST00000573474 TGP01266 2768 aa9.24□□□□□ -0.93
CCDC40-209ENST00000573474 PLECQ15149 4684 aaKnown RBP9.23□□□□□ -0.93
CCDC40-209ENST00000573474 IGHV3OR16-9A0A0B4J2B5 98 aa9.23□□□□□ -0.93
CCDC40-209ENST00000573474 CD164L2Q6UWJ8 174 aa9.23□□□□□ -0.93
CCDC40-209ENST00000573474 IGLV10-54A0A075B6I4 117 aa9.22□□□□□ -0.93
CCDC40-209ENST00000573474 IGKV2D-26A0A0A0MRZ7 120 aa9.22□□□□□ -0.93
CCDC40-209ENST00000573474 IBA57-AS1B1ANH7 110 aa9.22□□□□□ -0.93
CCDC40-209ENST00000573474 TSTD3H0UI37 97 aa9.22□□□□□ -0.93
CCDC40-209ENST00000573474 LEPROTO15243 131 aa9.22□□□□□ -0.93
CCDC40-209ENST00000573474 SPINK8P0C7L1 97 aa9.22□□□□□ -0.93
CCDC40-209ENST00000573474 NMUP48645 174 aa9.22□□□□□ -0.93
CCDC40-209ENST00000573474 PLEKHB2Q96CS7 222 aa9.22□□□□□ -0.93
CCDC40-209ENST00000573474 C14orf144Q96I85 54 aa9.22□□□□□ -0.93
CCDC40-209ENST00000573474 A0A087WZ39 114 aa9.21□□□□□ -0.94
CCDC40-209ENST00000573474 IGHV1-58A0A0C4DH39 117 aa9.21□□□□□ -0.94
CCDC40-209ENST00000573474 C3orf84H3BNL1 204 aa9.21□□□□□ -0.94
CCDC40-209ENST00000573474 COX8AP10176 69 aa9.21□□□□□ -0.94
CCDC40-209ENST00000573474 C5orf38Q86SI9 138 aa9.21□□□□□ -0.94
CCDC40-209ENST00000573474 LINC01561Q8N1V8 128 aa9.21□□□□□ -0.94
CCDC40-209ENST00000573474 STARD9Q9P2P6 4700 aa9.2□□□□□ -0.94
CCDC40-209ENST00000573474 TRAV8-3A0A0A6YYJ7 113 aa9.2□□□□□ -0.94
CCDC40-209ENST00000573474 GAGE12HA6NDE8 117 aa9.2□□□□□ -0.94
CCDC40-209ENST00000573474 SMIM1B2RUZ4 78 aa9.2□□□□□ -0.94
CCDC40-209ENST00000573474 COX7A2LO14548 114 aa9.2□□□□□ -0.94
CCDC40-209ENST00000573474 FOXI1Q12951 378 aa9.2□□□□□ -0.94
CCDC40-209ENST00000573474 IGHV3-64A0A075B6Q5 118 aa9.19□□□□□ -0.94
CCDC40-209ENST00000573474 IGLV5-39A0A0G2JS06 123 aa9.19□□□□□ -0.94
CCDC40-209ENST00000573474 J3QQQ9 107 aa9.19□□□□□ -0.94
CCDC40-209ENST00000573474 CASC10Q5T4H9 136 aa9.19□□□□□ -0.94
CCDC40-209ENST00000573474 SLC25A34Q6PIV7 304 aa9.19□□□□□ -0.94
CCDC40-209ENST00000573474 PCP2Q8IVA1 136 aa9.19□□□□□ -0.94
CCDC40-209ENST00000573474 MIEN1Q9BRT3 115 aa9.19□□□□□ -0.94
CCDC40-209ENST00000573474 UQCR10Q9UDW1 63 aa9.19□□□□□ -0.94
CCDC40-209ENST00000573474 DLEU1O43261 78 aa9.18□□□□□ -0.94
CCDC40-209ENST00000573474 LGALS3P17931 250 aaKnown RBP9.18□□□□□ -0.94
CCDC40-209ENST00000573474 BOD1L2Q8IYS8 172 aa9.18□□□□□ -0.94
CCDC40-209ENST00000573474 C1orf43Q9BWL3 253 aa9.18□□□□□ -0.94
CCDC40-209ENST00000573474 IGKV2D-24A0A075B6R9 120 aa9.17□□□□□ -0.94
CCDC40-209ENST00000573474 KRTAP26-1Q6PEX3 210 aa9.17□□□□□ -0.94
CCDC40-209ENST00000573474 RMI2Q96E14 147 aa9.17□□□□□ -0.94
CCDC40-209ENST00000573474 Q9HAA7 133 aa9.17□□□□□ -0.94
CCDC40-209ENST00000573474 TENM2Q9NT68 2774 aa9.16□□□□□ -0.94
CCDC40-209ENST00000573474 MYMXA0A1B0GTQ4 84 aa9.16□□□□□ -0.94
CCDC40-209ENST00000573474 MALP21145 153 aa9.16□□□□□ -0.94
CCDC40-209ENST00000573474 TSPEAR-AS2P59090 65 aa9.16□□□□□ -0.94
CCDC40-209ENST00000573474 TTC32Q5I0X7 151 aa9.16□□□□□ -0.94
CCDC40-209ENST00000573474 MAPKAPK5-AS1Q8N8E1 139 aa9.16□□□□□ -0.94
CCDC40-209ENST00000573474 TTTY13Q9BZ97 58 aa9.16□□□□□ -0.94
CCDC40-209ENST00000573474 VPS13DQ5THJ4 4388 aa9.15□□□□□ -0.94
CCDC40-209ENST00000573474 APOMO95445 188 aa9.15□□□□□ -0.94
CCDC40-209ENST00000573474 COX7B2Q8TF08 81 aa9.15□□□□□ -0.94
CCDC40-209ENST00000573474 NBDYA0A0U1RRE5 68 aa9.14□□□□□ -0.95
CCDC40-209ENST00000573474 ZNF815PA8K554 130 aa9.14□□□□□ -0.95
CCDC40-209ENST00000573474 KRTAP1-5Q9BYS1 174 aa9.14□□□□□ -0.95
CCDC40-209ENST00000573474 PCP4L1A6NKN8 68 aa9.13□□□□□ -0.95
CCDC40-209ENST00000573474 DDTP30046 118 aa9.13□□□□□ -0.95
CCDC40-209ENST00000573474 TOMM7Q9P0U1 55 aa9.13□□□□□ -0.95
CCDC40-209ENST00000573474 NDUFA12Q9UI09 145 aa9.13□□□□□ -0.95
CCDC40-209ENST00000573474 COX11Q9Y6N1 276 aa9.13□□□□□ -0.95
CCDC40-209ENST00000573474 DNAH1Q9P2D7 4330 aa9.13□□□□□ -0.95
CCDC40-209ENST00000573474 PRSS2P07478 247 aa9.12□□□□□ -0.95
CCDC40-209ENST00000573474 HNRNPA3P51991 378 aaKnown RBP9.12□□□□□ -0.95
CCDC40-209ENST00000573474 Q8IZM0 81 aa9.12□□□□□ -0.95
CCDC40-209ENST00000573474 ORAOV1Q8WV07 137 aa9.12□□□□□ -0.95
CCDC40-209ENST00000573474 TM2D2Q9BX73 214 aa9.12□□□□□ -0.95
CCDC40-209ENST00000573474 TP73-AS1Q9UF72 201 aa9.12□□□□□ -0.95
CCDC40-209ENST00000573474 NDUFA1O15239 70 aa9.11□□□□□ -0.95
CCDC40-209ENST00000573474 C6orf226Q5I0X4 101 aa9.11□□□□□ -0.95
CCDC40-209ENST00000573474 LYSTQ99698 3801 aa9.11□□□□□ -0.95
CCDC40-209ENST00000573474 CFAP161Q6P656 301 aa9.1□□□□□ -0.95
CCDC40-209ENST00000573474 HIGD1BQ9P298 99 aa9.1□□□□□ -0.95
CCDC40-209ENST00000573474 LY6G6CO95867 125 aa9.09□□□□□ -0.95
CCDC40-209ENST00000573474 HERV-K104P63124 156 aa9.09□□□□□ -0.95
CCDC40-209ENST00000573474 KIAA0087Q14695 138 aa9.09□□□□□ -0.95
CCDC40-209ENST00000573474 SFTA2Q6UW10 78 aa9.09□□□□□ -0.95
CCDC40-209ENST00000573474 SCGB1D4Q6XE38 83 aa9.09□□□□□ -0.95
CCDC40-209ENST00000573474 C2orf91Q6ZV80 131 aa9.09□□□□□ -0.95
CCDC40-209ENST00000573474 LINC00476Q8WZB0 136 aa9.09□□□□□ -0.95
CCDC40-209ENST00000573474 ZNF625Q96I27 306 aaPredicted RBP9.09□□□□□ -0.95
CCDC40-209ENST00000573474 SPAG11BQ08648 103 aa9.08□□□□□ -0.96
CCDC40-209ENST00000573474 A0A0J9YXY3 114 aa9.07□□□□□ -0.96
CCDC40-209ENST00000573474 CXCL5P42830 114 aa9.07□□□□□ -0.96
CCDC40-209ENST00000573474 CKS1BP61024 79 aa9.07□□□□□ -0.96
CCDC40-209ENST00000573474 ALMS1Q8TCU4 4167 aa9.06□□□□□ -0.96
CCDC40-209ENST00000573474 M0R2N4 97 aa9.06□□□□□ -0.96
CCDC40-209ENST00000573474 CTAG1AP78358 180 aa9.06□□□□□ -0.96
CCDC40-209ENST00000573474 Q6ZR54 194 aa9.06□□□□□ -0.96
CCDC40-209ENST00000573474 C15orf56Q8N910 161 aa9.06□□□□□ -0.96
CCDC40-209ENST00000573474 GVQW2A0A096LPI5 108 aaPredicted RBP9.05□□□□□ -0.96
CCDC40-209ENST00000573474 ZNF561-AS1K7EIQ3 104 aa9.05□□□□□ -0.96
CCDC40-209ENST00000573474 PSCAO43653 123 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 113.4 ms