RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 F8W036 122 aa10.39□□□□□ -0.75
CLK3-227ENST00000570296 F8WDY8 70 aa10.39□□□□□ -0.75
CLK3-227ENST00000570296 TSHBP01222 138 aa10.39□□□□□ -0.75
CLK3-227ENST00000570296 LCE2CQ5TA81 110 aa10.39□□□□□ -0.75
CLK3-227ENST00000570296 GATD1Q8NB37 220 aa10.39□□□□□ -0.75
CLK3-227ENST00000570296 TMEM218A2RU14 115 aa10.38□□□□□ -0.75
CLK3-227ENST00000570296 A8MWL6 223 aa10.38□□□□□ -0.75
CLK3-227ENST00000570296 F2Z2F3 143 aa10.38□□□□□ -0.75
CLK3-227ENST00000570296 PNRC1Q12796 327 aaPredicted RBP10.38□□□□□ -0.75
CLK3-227ENST00000570296 MRPL52Q86TS9 123 aaKnown RBP10.38□□□□□ -0.75
CLK3-227ENST00000570296 OSTCQ9NRP0 149 aa10.38□□□□□ -0.75
CLK3-227ENST00000570296 NUPR1O60356 82 aa10.37□□□□□ -0.75
CLK3-227ENST00000570296 OR10D4PQ8NGN7 298 aa10.37□□□□□ -0.75
CLK3-227ENST00000570296 SEC61BP60468 96 aaKnown RBP10.36□□□□□ -0.75
CLK3-227ENST00000570296 GAGE2EQ4V326 116 aa10.36□□□□□ -0.75
CLK3-227ENST00000570296 KRTAP13-2Q52LG2 175 aa10.36□□□□□ -0.75
CLK3-227ENST00000570296 CT83Q5H943 113 aa10.36□□□□□ -0.75
CLK3-227ENST00000570296 LINC00337Q8N6G1 96 aa10.36□□□□□ -0.75
CLK3-227ENST00000570296 GAGE2DQ9UEU5 116 aa10.36□□□□□ -0.75
CLK3-227ENST00000570296 SDHAF1A6NFY7 115 aa10.35□□□□□ -0.75
CLK3-227ENST00000570296 BORCS7Q96B45 105 aa10.35□□□□□ -0.75
CLK3-227ENST00000570296 RPL39LQ96EH5 51 aaKnown RBP10.35□□□□□ -0.75
CLK3-227ENST00000570296 SEC11CQ9BY50 192 aa10.35□□□□□ -0.75
CLK3-227ENST00000570296 PPP1R2P9O14990 202 aa10.34□□□□□ -0.75
CLK3-227ENST00000570296 NDUFA1O15239 70 aa10.34□□□□□ -0.75
CLK3-227ENST00000570296 C5orf38Q86SI9 138 aa10.34□□□□□ -0.75
CLK3-227ENST00000570296 MRAP2Q96G30 205 aa10.34□□□□□ -0.75
CLK3-227ENST00000570296 I3L3M4 83 aa10.33□□□□□ -0.76
CLK3-227ENST00000570296 RPL28P46779 137 aaKnown RBP10.33□□□□□ -0.76
CLK3-227ENST00000570296 MT-ND4LP03901 98 aa10.32□□□□□ -0.76
CLK3-227ENST00000570296 LORP23490 312 aaPredicted RBP10.32□□□□□ -0.76
CLK3-227ENST00000570296 MT1HP80294 61 aa10.32□□□□□ -0.76
CLK3-227ENST00000570296 NDUFA5Q16718 116 aa10.32□□□□□ -0.76
CLK3-227ENST00000570296 LYZL1Q6UWQ5 148 aa10.32□□□□□ -0.76
CLK3-227ENST00000570296 CTDSP1Q9GZU7 261 aa10.32□□□□□ -0.76
CLK3-227ENST00000570296 V9GYV3 84 aa10.32□□□□□ -0.76
CLK3-227ENST00000570296 ADCYAP1P18509 176 aa10.31□□□□□ -0.76
CLK3-227ENST00000570296 PMCHP20382 165 aa10.31□□□□□ -0.76
CLK3-227ENST00000570296 C10orf25Q5T742 122 aa10.31□□□□□ -0.76
CLK3-227ENST00000570296 ANAPC16Q96DE5 110 aa10.31□□□□□ -0.76
CLK3-227ENST00000570296 C6orf48Q9UBA6 75 aa10.31□□□□□ -0.76
CLK3-227ENST00000570296 CTRLP40313 264 aa10.3□□□□□ -0.76
CLK3-227ENST00000570296 KRTAP13-3Q3SY46 172 aa10.3□□□□□ -0.76
CLK3-227ENST00000570296 FAM229BQ4G0N7 80 aa10.3□□□□□ -0.76
CLK3-227ENST00000570296 FP248Q71RG6 208 aaPredicted RBP10.3□□□□□ -0.76
CLK3-227ENST00000570296 ANAPC11Q9NYG5 84 aa10.3□□□□□ -0.76
CLK3-227ENST00000570296 NAT8BQ9UHF3 227 aa10.3□□□□□ -0.76
CLK3-227ENST00000570296 HIGD1CA8MV81 97 aa10.29□□□□□ -0.76
CLK3-227ENST00000570296 FOXA3P55318 350 aaPredicted RBP10.29□□□□□ -0.76
CLK3-227ENST00000570296 TWIST1Q15672 202 aa10.29□□□□□ -0.76
CLK3-227ENST00000570296 LINC00242Q5T6M2 205 aa10.29□□□□□ -0.76
CLK3-227ENST00000570296 SMIM15Q7Z3B0 74 aa10.29□□□□□ -0.76
CLK3-227ENST00000570296 ORAOV1Q8WV07 137 aa10.29□□□□□ -0.76
CLK3-227ENST00000570296 UNQ6190/PRO20217Q6UXQ8 127 aa10.28□□□□□ -0.76
CLK3-227ENST00000570296 TRAV13-1A0A0B4J241 112 aa10.27□□□□□ -0.77
CLK3-227ENST00000570296 C10orf91Q5T1B1 145 aa10.27□□□□□ -0.77
CLK3-227ENST00000570296 CNFNQ9BYD5 112 aa10.27□□□□□ -0.77
CLK3-227ENST00000570296 TRBV6-5A0A0K0K1A5 114 aa10.26□□□□□ -0.77
CLK3-227ENST00000570296 A0A1B0GUT8 65 aa10.26□□□□□ -0.77
CLK3-227ENST00000570296 SMIM27A0A1W2PRY6 76 aa10.26□□□□□ -0.77
CLK3-227ENST00000570296 KRTAP10-6P60371 365 aaPredicted RBP10.26□□□□□ -0.77
CLK3-227ENST00000570296 RIGQ13278 110 aa10.26□□□□□ -0.77
CLK3-227ENST00000570296 C9orf129Q5T035 196 aaKnown RBP10.26□□□□□ -0.77
CLK3-227ENST00000570296 TMEM242Q9NWH2 141 aa10.26□□□□□ -0.77
CLK3-227ENST00000570296 CSDC2Q9Y534 153 aaKnown RBP10.26□□□□□ -0.77
CLK3-227ENST00000570296 C7orf77A4D0Y5 90 aa10.25□□□□□ -0.77
CLK3-227ENST00000570296 BCE1O60756 84 aa10.25□□□□□ -0.77
CLK3-227ENST00000570296 APOC3P02656 99 aa10.25□□□□□ -0.77
CLK3-227ENST00000570296 SLC7A5P1Q8MH63 180 aa10.25□□□□□ -0.77
CLK3-227ENST00000570296 SVBPQ8N300 66 aa10.25□□□□□ -0.77
CLK3-227ENST00000570296 RHEBQ15382 184 aa10.24□□□□□ -0.77
CLK3-227ENST00000570296 KRTAP19-2Q3LHN2 52 aa10.24□□□□□ -0.77
CLK3-227ENST00000570296 NDUFC2-KCTD14E9PQ53 114 aa10.23□□□□□ -0.77
CLK3-227ENST00000570296 SNAPINO95295 136 aa10.23□□□□□ -0.77
CLK3-227ENST00000570296 LBHQ53QV2 105 aaPredicted RBP10.23□□□□□ -0.77
CLK3-227ENST00000570296 RPS10P5Q9NQ39 176 aa10.23□□□□□ -0.77
CLK3-227ENST00000570296 SSPOA2VEC9 5147 aa10.22□□□□□ -0.77
CLK3-227ENST00000570296 IGKV2D-26A0A0A0MRZ7 120 aa10.22□□□□□ -0.77
CLK3-227ENST00000570296 A0A1B0GW15 77 aa10.22□□□□□ -0.77
CLK3-227ENST00000570296 S100A8P05109 93 aa10.22□□□□□ -0.77
CLK3-227ENST00000570296 S100PP25815 95 aa10.22□□□□□ -0.77
CLK3-227ENST00000570296 SMAGPQ0VAQ4 97 aa10.22□□□□□ -0.77
CLK3-227ENST00000570296 RNASE13Q5GAN3 156 aaKnown RBP10.22□□□□□ -0.77
CLK3-227ENST00000570296 C22orf24Q9Y442 160 aa10.21□□□□□ -0.77
CLK3-227ENST00000570296 TRBV30A0A0K0K1B3 111 aa10.2□□□□□ -0.78
CLK3-227ENST00000570296 ST20Q9HBF5 79 aa10.2□□□□□ -0.78
CLK3-227ENST00000570296 UBE2D4Q9Y2X8 147 aa10.2□□□□□ -0.78
CLK3-227ENST00000570296 HBBP68871 147 aa10.19□□□□□ -0.78
CLK3-227ENST00000570296 MRPL54Q6P161 138 aaKnown RBP10.19□□□□□ -0.78
CLK3-227ENST00000570296 ATP5L2Q7Z4Y8 100 aa10.19□□□□□ -0.78
CLK3-227ENST00000570296 TMEM191AQ9H0A3 160 aa10.19□□□□□ -0.78
CLK3-227ENST00000570296 IGHV3OR16-9A0A0B4J2B5 98 aa10.18□□□□□ -0.78
CLK3-227ENST00000570296 TRBV27A0A0K0K1C4 114 aa10.18□□□□□ -0.78
CLK3-227ENST00000570296 POLR2KP53803 58 aaKnown RBP10.17□□□□□ -0.78
CLK3-227ENST00000570296 PACRGQ96M98 296 aaPredicted RBP10.17□□□□□ -0.78
CLK3-227ENST00000570296 TRAV9-1A0A075B6T8 112 aa10.16□□□□□ -0.78
CLK3-227ENST00000570296 SPAG11AQ6PDA7 123 aa10.16□□□□□ -0.78
CLK3-227ENST00000570296 Q6ZUT4 128 aa10.16□□□□□ -0.78
CLK3-227ENST00000570296 TP73-AS1Q9UF72 201 aa10.16□□□□□ -0.78
CLK3-227ENST00000570296 USH2AO75445 5202 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 83 ms