RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-238ENST00000569430 ZNF462Q96JM2 2506 aa8.35□□□□□ -1.07
CLN3-238ENST00000569430 SS18Q15532 418 aa8.34□□□□□ -1.07
CLN3-238ENST00000569430 Q6ZTI0 123 aa8.34□□□□□ -1.07
CLN3-238ENST00000569430 Q9UF83 564 aa8.34□□□□□ -1.07
CLN3-238ENST00000569430 K7EQD1 137 aa8.34□□□□□ -1.07
CLN3-238ENST00000569430 H0YGX0 51 aa8.33□□□□□ -1.08
CLN3-238ENST00000569430 NCR3O14931 201 aa8.33□□□□□ -1.08
CLN3-238ENST00000569430 VPREB3Q9UKI3 123 aa8.33□□□□□ -1.08
CLN3-238ENST00000569430 TRAV23DV6A0A075B6W5 121 aa8.33□□□□□ -1.08
CLN3-238ENST00000569430 SBSPONQ8IVN8 264 aa8.33□□□□□ -1.08
CLN3-238ENST00000569430 IGLV10-54A0A075B6I4 117 aa8.32□□□□□ -1.08
CLN3-238ENST00000569430 COX6A2Q02221 97 aa8.32□□□□□ -1.08
CLN3-238ENST00000569430 RBMY1FQ15415 496 aaKnown RBP8.31□□□□□ -1.08
CLN3-238ENST00000569430 Q6ZSN1 163 aa8.31□□□□□ -1.08
CLN3-238ENST00000569430 M0QXV9 152 aa8.31□□□□□ -1.08
CLN3-238ENST00000569430 LOC107984640A0A0U1RRK4 108 aa8.31□□□□□ -1.08
CLN3-238ENST00000569430 PF4P02776 101 aa8.31□□□□□ -1.08
CLN3-238ENST00000569430 NHLRC4P0CG21 123 aaPredicted RBP8.31□□□□□ -1.08
CLN3-238ENST00000569430 MAP6D1Q9H9H5 199 aa8.31□□□□□ -1.08
CLN3-238ENST00000569430 LINC00242Q5T6M2 205 aa8.3□□□□□ -1.08
CLN3-238ENST00000569430 AMELXQ99217 191 aa8.3□□□□□ -1.08
CLN3-238ENST00000569430 PPDPFQ9H3Y8 114 aa8.3□□□□□ -1.08
CLN3-238ENST00000569430 FAM240AA0A1B0GVK7 77 aa8.3□□□□□ -1.08
CLN3-238ENST00000569430 A0A087WVE0 104 aa8.3□□□□□ -1.08
CLN3-238ENST00000569430 PSMB8P28062 276 aa8.3□□□□□ -1.08
CLN3-238ENST00000569430 C18orf65Q6ZTR6 163 aa8.3□□□□□ -1.08
CLN3-238ENST00000569430 ANKRD17O75179 2603 aaKnown RBP8.3□□□□□ -1.08
CLN3-238ENST00000569430 AVPP01185 164 aa8.29□□□□□ -1.08
CLN3-238ENST00000569430 IGLV1-40P01703 118 aa8.29□□□□□ -1.08
CLN3-238ENST00000569430 DSCR9P59020 149 aa8.29□□□□□ -1.08
CLN3-238ENST00000569430 IMUPQ9GZP8 106 aa8.29□□□□□ -1.08
CLN3-238ENST00000569430 TIMM17BO60830 172 aa8.29□□□□□ -1.08
CLN3-238ENST00000569430 IGSF10Q6WRI0 2623 aa8.29□□□□□ -1.08
CLN3-238ENST00000569430 CHCHD7Q9BUK0 85 aa8.29□□□□□ -1.08
CLN3-238ENST00000569430 ESM1Q9NQ30 184 aa8.29□□□□□ -1.08
CLN3-238ENST00000569430 C20orf197Q8N268 126 aa8.29□□□□□ -1.08
CLN3-238ENST00000569430 Q8N2B8 174 aa8.29□□□□□ -1.08
CLN3-238ENST00000569430 GHRHP01286 108 aa8.28□□□□□ -1.08
CLN3-238ENST00000569430 FAM110AQ9BQ89 295 aa8.28□□□□□ -1.08
CLN3-238ENST00000569430 ANGP03950 147 aaKnown RBP8.28□□□□□ -1.08
CLN3-238ENST00000569430 COX7CP15954 63 aa8.28□□□□□ -1.08
CLN3-238ENST00000569430 WFDC9Q8NEX5 89 aa8.27□□□□□ -1.09
CLN3-238ENST00000569430 SMIM11BQ8TCY0 68 aa8.27□□□□□ -1.09
CLN3-238ENST00000569430 EIF4EBP3O60516 100 aaPredicted RBP8.27□□□□□ -1.09
CLN3-238ENST00000569430 SMIM1B2RUZ4 78 aa8.26□□□□□ -1.09
CLN3-238ENST00000569430 FASNP49327 2511 aaKnown RBP8.26□□□□□ -1.09
CLN3-238ENST00000569430 USP17L23D6RBM5 183 aa8.26□□□□□ -1.09
CLN3-238ENST00000569430 FBN2P35556 2912 aa8.26□□□□□ -1.09
CLN3-238ENST00000569430 LOC100131303A0A0U1RQF7 123 aa8.26□□□□□ -1.09
CLN3-238ENST00000569430 RNF152Q8N8N0 203 aa8.26□□□□□ -1.09
CLN3-238ENST00000569430 NF1P21359 2839 aa8.26□□□□□ -1.09
CLN3-238ENST00000569430 FAM19A4Q96LR4 140 aa8.25□□□□□ -1.09
CLN3-238ENST00000569430 DSCR8Q96T75 97 aa8.25□□□□□ -1.09
CLN3-238ENST00000569430 TRBV10-1A0A0K0K1A3 114 aa8.25□□□□□ -1.09
CLN3-238ENST00000569430 CCL24O00175 119 aa8.25□□□□□ -1.09
CLN3-238ENST00000569430 RBM3P98179 157 aaKnown RBP8.25□□□□□ -1.09
CLN3-238ENST00000569430 GYPEP15421 78 aa8.25□□□□□ -1.09
CLN3-238ENST00000569430 RPL18AQ02543 176 aaKnown RBP8.25□□□□□ -1.09
CLN3-238ENST00000569430 ENHOQ6UWT2 76 aa8.25□□□□□ -1.09
CLN3-238ENST00000569430 CITED2Q99967 270 aaPredicted RBP8.24□□□□□ -1.09
CLN3-238ENST00000569430 TMEM89A2RUT3 159 aa8.23□□□□□ -1.09
CLN3-238ENST00000569430 A0A087WYN8 130 aa8.23□□□□□ -1.09
CLN3-238ENST00000569430 CCL18P55774 89 aa8.23□□□□□ -1.09
CLN3-238ENST00000569430 DEFB114Q30KQ6 69 aa8.23□□□□□ -1.09
CLN3-238ENST00000569430 LINC00526Q96FQ7 95 aa8.23□□□□□ -1.09
CLN3-238ENST00000569430 SERP2Q8N6R1 65 aa8.22□□□□□ -1.09
CLN3-238ENST00000569430 TRAV25A0A0B4J276 109 aa8.22□□□□□ -1.09
CLN3-238ENST00000569430 TRBV7-7A0A0K0K1E9 115 aa8.22□□□□□ -1.09
CLN3-238ENST00000569430 CXCL5P42830 114 aa8.22□□□□□ -1.09
CLN3-238ENST00000569430 CDC42SE2Q9NRR3 84 aa8.22□□□□□ -1.09
CLN3-238ENST00000569430 DOPEY1Q5JWR5 2465 aa8.22□□□□□ -1.09
CLN3-238ENST00000569430 JMJD7-PLA2G4BH0Y9G9 81 aa8.22□□□□□ -1.09
CLN3-238ENST00000569430 Q96MF0 132 aa8.22□□□□□ -1.09
CLN3-238ENST00000569430 TEX15Q9BXT5 2789 aa8.21□□□□□ -1.09
CLN3-238ENST00000569430 FAM19A5Q7Z5A7 132 aaPredicted RBP8.21□□□□□ -1.09
CLN3-238ENST00000569430 LITAFQ99732 161 aa8.21□□□□□ -1.09
CLN3-238ENST00000569430 J3QLI3 93 aa8.21□□□□□ -1.1
CLN3-238ENST00000569430 SOSTDC1Q6X4U4 206 aa8.21□□□□□ -1.1
CLN3-238ENST00000569430 F5H768 121 aa8.21□□□□□ -1.1
CLN3-238ENST00000569430 CMC4P56277 68 aaPredicted RBP8.21□□□□□ -1.1
CLN3-238ENST00000569430 C5orf47Q569G3 176 aa8.21□□□□□ -1.1
CLN3-238ENST00000569430 WFDC11Q8NEX6 87 aa8.21□□□□□ -1.1
CLN3-238ENST00000569430 DEFB4AO15263 64 aa8.2□□□□□ -1.1
CLN3-238ENST00000569430 MXRA5Q9NR99 2828 aa8.2□□□□□ -1.1
CLN3-238ENST00000569430 FAM218AQ96MZ4 157 aa8.2□□□□□ -1.1
CLN3-238ENST00000569430 UPK3BQ9BT76 320 aa8.2□□□□□ -1.1
CLN3-238ENST00000569430 WFDC10AQ9H1F0 79 aa8.2□□□□□ -1.1
CLN3-238ENST00000569430 NIPBLQ6KC79 2804 aaeCLIP8.2□□□□□ -1.1
CLN3-238ENST00000569430 PRR3P79522 188 aaKnown RBP8.2□□□□□ -1.1
CLN3-238ENST00000569430 C1orf43Q9BWL3 253 aa8.2□□□□□ -1.1
CLN3-238ENST00000569430 TMEM256-PLSCR3K7ERE1 68 aa8.19□□□□□ -1.1
CLN3-238ENST00000569430 C16orf74Q96GX8 76 aa8.19□□□□□ -1.1
CLN3-238ENST00000569430 LINC00846Q9NV44 126 aa8.19□□□□□ -1.1
CLN3-238ENST00000569430 SCXQ7RTU7 201 aa8.19□□□□□ -1.1
CLN3-238ENST00000569430 LRRC75A-AS1Q8N1F1 130 aa8.19□□□□□ -1.1
CLN3-238ENST00000569430 LINC00337Q8N6G1 96 aa8.19□□□□□ -1.1
CLN3-238ENST00000569430 IBA57-AS1B1ANH7 110 aa8.18□□□□□ -1.1
CLN3-238ENST00000569430 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8.18□□□□□ -1.1
CLN3-238ENST00000569430 DAD1P61803 113 aa8.18□□□□□ -1.1
CLN3-238ENST00000569430 C6orf99Q4VX62 202 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 122.4 ms