RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 SCXQ7RTU7 201 aa8.39□□□□□ -1.07
CLK3-224ENST00000568605 OR10D4PQ8NGN7 298 aa8.39□□□□□ -1.07
CLK3-224ENST00000568605 FAM104AQ969W3 186 aa8.39□□□□□ -1.07
CLK3-224ENST00000568605 CARD19Q96LW7 228 aa8.39□□□□□ -1.07
CLK3-224ENST00000568605 CHAC1Q9BUX1 264 aa8.39□□□□□ -1.07
CLK3-224ENST00000568605 IGHV3OR16-9A0A0B4J2B5 98 aa8.38□□□□□ -1.07
CLK3-224ENST00000568605 IGIPA6NJ69 53 aa8.38□□□□□ -1.07
CLK3-224ENST00000568605 FAM229AH3BQW9 127 aa8.38□□□□□ -1.07
CLK3-224ENST00000568605 RAB5BP61020 215 aa8.38□□□□□ -1.07
CLK3-224ENST00000568605 SEC11AP67812 179 aa8.38□□□□□ -1.07
CLK3-224ENST00000568605 ERASQ7Z444 233 aa8.38□□□□□ -1.07
CLK3-224ENST00000568605 C5orf38Q86SI9 138 aa8.38□□□□□ -1.07
CLK3-224ENST00000568605 CBLN2Q8IUK8 224 aa8.38□□□□□ -1.07
CLK3-224ENST00000568605 C18orf32Q8TCD1 76 aa8.38□□□□□ -1.07
CLK3-224ENST00000568605 SCGB3A1Q96QR1 104 aa8.38□□□□□ -1.07
CLK3-224ENST00000568605 AMELXQ99217 191 aa8.38□□□□□ -1.07
CLK3-224ENST00000568605 SLPIP03973 132 aa8.37□□□□□ -1.07
CLK3-224ENST00000568605 UBE2D1P51668 147 aa8.37□□□□□ -1.07
CLK3-224ENST00000568605 SPAG11BQ08648 103 aa8.37□□□□□ -1.07
CLK3-224ENST00000568605 SYCNQ0VAF6 134 aa8.37□□□□□ -1.07
CLK3-224ENST00000568605 Q5VSD8 79 aa8.37□□□□□ -1.07
CLK3-224ENST00000568605 LINC00242Q5T6M2 205 aa8.36□□□□□ -1.07
CLK3-224ENST00000568605 LINC00173Q6ZV60 143 aa8.36□□□□□ -1.07
CLK3-224ENST00000568605 ORAOV1Q8WV07 137 aa8.36□□□□□ -1.07
CLK3-224ENST00000568605 C2orf48Q96LS8 159 aa8.36□□□□□ -1.07
CLK3-224ENST00000568605 YPEL4Q96NS1 127 aa8.36□□□□□ -1.07
CLK3-224ENST00000568605 CAMK2N2Q96S95 79 aa8.36□□□□□ -1.07
CLK3-224ENST00000568605 IGLV4-69A0A075B6H9 119 aa8.35□□□□□ -1.07
CLK3-224ENST00000568605 F8WDY8 70 aa8.35□□□□□ -1.07
CLK3-224ENST00000568605 HBDP02042 147 aa8.35□□□□□ -1.07
CLK3-224ENST00000568605 SMR3BP02814 79 aaPredicted RBP8.35□□□□□ -1.07
CLK3-224ENST00000568605 LINC00614P0C842 121 aa8.35□□□□□ -1.07
CLK3-224ENST00000568605 HERVK_113P63121 156 aa8.35□□□□□ -1.07
CLK3-224ENST00000568605 SDIM1Q6ZPB5 146 aa8.35□□□□□ -1.07
CLK3-224ENST00000568605 CIRBP-AS1Q8TBR5 109 aa8.35□□□□□ -1.07
CLK3-224ENST00000568605 LINC00526Q96FQ7 95 aa8.35□□□□□ -1.07
CLK3-224ENST00000568605 A0A087WZ39 114 aa8.34□□□□□ -1.07
CLK3-224ENST00000568605 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.34□□□□□ -1.07
CLK3-224ENST00000568605 COX6A2Q02221 97 aa8.34□□□□□ -1.07
CLK3-224ENST00000568605 LINC00528Q8N1L1 170 aa8.34□□□□□ -1.07
CLK3-224ENST00000568605 LINC01561Q8N1V8 128 aa8.34□□□□□ -1.07
CLK3-224ENST00000568605 GEMIN7Q9H840 131 aaKnown RBP8.34□□□□□ -1.07
CLK3-224ENST00000568605 LINC00474Q9P2X8 69 aa8.34□□□□□ -1.07
CLK3-224ENST00000568605 NDUFA1O15239 70 aa8.33□□□□□ -1.08
CLK3-224ENST00000568605 PLA2G1BP04054 148 aaKnown RBP8.33□□□□□ -1.08
CLK3-224ENST00000568605 FAM19A3Q7Z5A8 133 aa8.33□□□□□ -1.08
CLK3-224ENST00000568605 PACRGQ96M98 296 aaPredicted RBP8.33□□□□□ -1.08
CLK3-224ENST00000568605 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.33□□□□□ -1.08
CLK3-224ENST00000568605 CIRBPQ14011 172 aaKnown RBP8.32□□□□□ -1.08
CLK3-224ENST00000568605 ZC2HC1BQ5TFG8 222 aa8.32□□□□□ -1.08
CLK3-224ENST00000568605 SPACA4Q8TDM5 124 aa8.32□□□□□ -1.08
CLK3-224ENST00000568605 DPH3Q96FX2 82 aa8.32□□□□□ -1.08
CLK3-224ENST00000568605 IGKV2-24A0A0C4DH68 120 aa8.31□□□□□ -1.08
CLK3-224ENST00000568605 LOC107984640A0A0U1RRK4 108 aa8.31□□□□□ -1.08
CLK3-224ENST00000568605 PMVKQ15126 192 aa8.31□□□□□ -1.08
CLK3-224ENST00000568605 Q6ZRU5 148 aa8.31□□□□□ -1.08
CLK3-224ENST00000568605 CHCHD1Q96BP2 118 aaKnown RBP8.31□□□□□ -1.08
CLK3-224ENST00000568605 ATP5LO75964 103 aa8.3□□□□□ -1.08
CLK3-224ENST00000568605 PRSS2P07478 247 aa8.3□□□□□ -1.08
CLK3-224ENST00000568605 CHTF8P0CG12 524 aa8.3□□□□□ -1.08
CLK3-224ENST00000568605 KRTAP4-5Q9BYR2 181 aa8.3□□□□□ -1.08
CLK3-224ENST00000568605 MRPL35Q9NZE8 188 aaKnown RBP8.3□□□□□ -1.08
CLK3-224ENST00000568605 FAT1Q14517 4588 aa8.29□□□□□ -1.08
CLK3-224ENST00000568605 A0A096LNI7 61 aa8.29□□□□□ -1.08
CLK3-224ENST00000568605 TINCRA0A1B0GVN0 87 aa8.29□□□□□ -1.08
CLK3-224ENST00000568605 RNF151Q2KHN1 245 aa8.29□□□□□ -1.08
CLK3-224ENST00000568605 MAJINQ3KP22 176 aa8.29□□□□□ -1.08
CLK3-224ENST00000568605 LINC00469Q8N7U9 141 aa8.29□□□□□ -1.08
CLK3-224ENST00000568605 URB1-AS1Q96HZ7 61 aa8.29□□□□□ -1.08
CLK3-224ENST00000568605 A0A087WYN8 130 aa8.28□□□□□ -1.08
CLK3-224ENST00000568605 A0A096LNJ9 63 aa8.28□□□□□ -1.08
CLK3-224ENST00000568605 A0A0J9YXV3 536 aa8.28□□□□□ -1.08
CLK3-224ENST00000568605 PANO1I0J062 215 aa8.28□□□□□ -1.08
CLK3-224ENST00000568605 HSBP1O75506 76 aa8.28□□□□□ -1.08
CLK3-224ENST00000568605 TRGC2P03986 189 aa8.28□□□□□ -1.08
CLK3-224ENST00000568605 BAGE3Q86Y29 109 aa8.28□□□□□ -1.08
CLK3-224ENST00000568605 KRTAP17-1Q9BYP8 105 aa8.28□□□□□ -1.08
CLK3-224ENST00000568605 CST9LQ9H4G1 147 aa8.28□□□□□ -1.08
CLK3-224ENST00000568605 CDKN2A-AS1Q9UH64 79 aa8.28□□□□□ -1.08
CLK3-224ENST00000568605 H3BRM9 83 aa8.27□□□□□ -1.09
CLK3-224ENST00000568605 NDUFA6P56556 154 aa8.27□□□□□ -1.09
CLK3-224ENST00000568605 RPL18AQ02543 176 aaKnown RBP8.27□□□□□ -1.09
CLK3-224ENST00000568605 PMCHL1Q16048 86 aa8.27□□□□□ -1.09
CLK3-224ENST00000568605 Q8IZM0 81 aa8.27□□□□□ -1.09
CLK3-224ENST00000568605 TOMM7Q9P0U1 55 aa8.27□□□□□ -1.09
CLK3-224ENST00000568605 TRBV30A0A0K0K1B3 111 aa8.26□□□□□ -1.09
CLK3-224ENST00000568605 CXCL5P42830 114 aa8.26□□□□□ -1.09
CLK3-224ENST00000568605 PTTG1IPP53801 180 aa8.26□□□□□ -1.09
CLK3-224ENST00000568605 CKS1BP61024 79 aa8.26□□□□□ -1.09
CLK3-224ENST00000568605 GAGE2BQ13066 116 aa8.26□□□□□ -1.09
CLK3-224ENST00000568605 PDZD11Q5EBL8 140 aa8.26□□□□□ -1.09
CLK3-224ENST00000568605 STPG4Q8N801 248 aa8.26□□□□□ -1.09
CLK3-224ENST00000568605 C7orf33Q8WU49 177 aa8.26□□□□□ -1.09
CLK3-224ENST00000568605 PLAC8Q9NZF1 115 aa8.26□□□□□ -1.09
CLK3-224ENST00000568605 PCLOQ9Y6V0 5065 aa8.26□□□□□ -1.09
CLK3-224ENST00000568605 ABCA13Q86UQ4 5058 aa8.25□□□□□ -1.09
CLK3-224ENST00000568605 IGLV5-45A0A087WSX0 123 aa8.25□□□□□ -1.09
CLK3-224ENST00000568605 INAFM2P0DMQ5 153 aa8.25□□□□□ -1.09
CLK3-224ENST00000568605 RPL37AP61513 92 aaKnown RBP8.25□□□□□ -1.09
CLK3-224ENST00000568605 KIAA0087Q14695 138 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms