RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 F8WDY8 70 aa10.5□□□□□ -0.73
CLN3-216ENST00000565316 MRPS36P82909 103 aaKnown RBP10.5□□□□□ -0.73
CLN3-216ENST00000565316 OPRPNQ99935 248 aaPredicted RBP10.5□□□□□ -0.73
CLN3-216ENST00000565316 SMIM2Q9BVW6 85 aa10.5□□□□□ -0.73
CLN3-216ENST00000565316 SPANXA1Q9NS26 97 aa10.5□□□□□ -0.73
CLN3-216ENST00000565316 MRPL35Q9NZE8 188 aaKnown RBP10.5□□□□□ -0.73
CLN3-216ENST00000565316 RPL18AQ02543 176 aaKnown RBP10.49□□□□□ -0.73
CLN3-216ENST00000565316 MT-ND6P03923 174 aa10.48□□□□□ -0.73
CLN3-216ENST00000565316 A0A1B0GXF2 115 aa10.47□□□□□ -0.73
CLN3-216ENST00000565316 D6R8Y8 96 aa10.47□□□□□ -0.73
CLN3-216ENST00000565316 SRSF3P84103 164 aaKnown RBP10.47□□□□□ -0.73
CLN3-216ENST00000565316 PHF5AQ7RTV0 110 aaKnown RBP10.47□□□□□ -0.73
CLN3-216ENST00000565316 ORAOV1Q8WV07 137 aa10.47□□□□□ -0.73
CLN3-216ENST00000565316 SMDT1Q9H4I9 107 aa10.47□□□□□ -0.73
CLN3-216ENST00000565316 F8W036 122 aa10.46□□□□□ -0.73
CLN3-216ENST00000565316 S100A8P05109 93 aa10.46□□□□□ -0.73
CLN3-216ENST00000565316 HBBP68871 147 aa10.46□□□□□ -0.73
CLN3-216ENST00000565316 IMMP2LQ96T52 175 aa10.46□□□□□ -0.73
CLN3-216ENST00000565316 NDUFA1O15239 70 aa10.45□□□□□ -0.74
CLN3-216ENST00000565316 NPYP01303 97 aa10.45□□□□□ -0.74
CLN3-216ENST00000565316 PPBPP02775 128 aa10.45□□□□□ -0.74
CLN3-216ENST00000565316 TLX1NBP0CAT3 122 aa10.45□□□□□ -0.74
CLN3-216ENST00000565316 PEA15Q15121 130 aa10.45□□□□□ -0.74
CLN3-216ENST00000565316 C1orf137Q5JT78 98 aa10.45□□□□□ -0.74
CLN3-216ENST00000565316 C10orf25Q5T742 122 aa10.45□□□□□ -0.74
CLN3-216ENST00000565316 MRPL54Q6P161 138 aaKnown RBP10.45□□□□□ -0.74
CLN3-216ENST00000565316 IFITM10A6NMD0 228 aa10.43□□□□□ -0.74
CLN3-216ENST00000565316 UNQ6190/PRO20217Q6UXQ8 127 aa10.43□□□□□ -0.74
CLN3-216ENST00000565316 KIAA0087Q14695 138 aa10.42□□□□□ -0.74
CLN3-216ENST00000565316 C6orf48Q9UBA6 75 aa10.42□□□□□ -0.74
CLN3-216ENST00000565316 PYGO1Q9Y3Y4 419 aa10.42□□□□□ -0.74
CLN3-216ENST00000565316 A0A087WZ39 114 aa10.41□□□□□ -0.74
CLN3-216ENST00000565316 FAM168BA1KXE4 195 aa10.41□□□□□ -0.74
CLN3-216ENST00000565316 IGLV7-43P04211 117 aa10.41□□□□□ -0.74
CLN3-216ENST00000565316 KRTAP11-1Q8IUC1 163 aa10.41□□□□□ -0.74
CLN3-216ENST00000565316 TMEM136Q6ZRR5 245 aa10.4□□□□□ -0.74
CLN3-216ENST00000565316 ATP5L2Q7Z4Y8 100 aa10.4□□□□□ -0.74
CLN3-216ENST00000565316 ORMDL3Q8N138 153 aa10.4□□□□□ -0.74
CLN3-216ENST00000565316 DIRC1Q969H9 104 aa10.4□□□□□ -0.74
CLN3-216ENST00000565316 TGIF2-C20orf24A0A0A6YYL0 155 aa10.39□□□□□ -0.75
CLN3-216ENST00000565316 PRSS47A8MTI9 375 aa10.39□□□□□ -0.75
CLN3-216ENST00000565316 RAB5AP20339 215 aa10.39□□□□□ -0.75
CLN3-216ENST00000565316 LINC00242Q5T6M2 205 aa10.39□□□□□ -0.75
CLN3-216ENST00000565316 IGLV4-3A0A075B6K6 122 aa10.38□□□□□ -0.75
CLN3-216ENST00000565316 IFI27P40305 119 aaPredicted RBP10.38□□□□□ -0.75
CLN3-216ENST00000565316 KRTAP7-1Q8IUC3 87 aa10.38□□□□□ -0.75
CLN3-216ENST00000565316 PRELID3AQ96N28 172 aa10.38□□□□□ -0.75
CLN3-216ENST00000565316 LPAP08519 4548 aa10.37□□□□□ -0.75
CLN3-216ENST00000565316 TRBV30A0A0K0K1B3 111 aa10.36□□□□□ -0.75
CLN3-216ENST00000565316 H0Y9J4 135 aa10.36□□□□□ -0.75
CLN3-216ENST00000565316 GAGE2EQ4V326 116 aa10.36□□□□□ -0.75
CLN3-216ENST00000565316 FAM19A5Q7Z5A7 132 aaPredicted RBP10.36□□□□□ -0.75
CLN3-216ENST00000565316 LINC01561Q8N1V8 128 aa10.36□□□□□ -0.75
CLN3-216ENST00000565316 TMEM141Q96I45 108 aa10.36□□□□□ -0.75
CLN3-216ENST00000565316 GAGE2DQ9UEU5 116 aa10.36□□□□□ -0.75
CLN3-216ENST00000565316 PRR26Q8N8Z3 221 aa10.35□□□□□ -0.75
CLN3-216ENST00000565316 LAMTOR2Q9Y2Q5 125 aa10.35□□□□□ -0.75
CLN3-216ENST00000565316 UBE2D1P51668 147 aa10.34□□□□□ -0.75
CLN3-216ENST00000565316 NDUFC2-KCTD14E9PQ53 114 aa10.33□□□□□ -0.76
CLN3-216ENST00000565316 C2orf82Q6UX34 121 aa10.33□□□□□ -0.76
CLN3-216ENST00000565316 M0QXV9 152 aa10.33□□□□□ -0.76
CLN3-216ENST00000565316 KRTAP1-4P0C5Y4 121 aa10.33□□□□□ -0.76
CLN3-216ENST00000565316 C9orf129Q5T035 196 aaKnown RBP10.33□□□□□ -0.76
CLN3-216ENST00000565316 TEX43Q6ZNM6 134 aa10.33□□□□□ -0.76
CLN3-216ENST00000565316 IGLV1-50A0A075B6I6 118 aa10.32□□□□□ -0.76
CLN3-216ENST00000565316 LOC389332A0A1B0GUA5 103 aa10.32□□□□□ -0.76
CLN3-216ENST00000565316 LINC00173Q6ZV60 143 aa10.32□□□□□ -0.76
CLN3-216ENST00000565316 Q8N8P6 123 aa10.32□□□□□ -0.76
CLN3-216ENST00000565316 AMELXQ99217 191 aa10.32□□□□□ -0.76
CLN3-216ENST00000565316 MAP1LC3AQ9H492 121 aa10.32□□□□□ -0.76
CLN3-216ENST00000565316 NPSP0C0P6 89 aa10.31□□□□□ -0.76
CLN3-216ENST00000565316 C2orf66Q6UXQ4 117 aa10.31□□□□□ -0.76
CLN3-216ENST00000565316 FAM19A3Q7Z5A8 133 aa10.31□□□□□ -0.76
CLN3-216ENST00000565316 PACRGQ96M98 296 aaPredicted RBP10.31□□□□□ -0.76
CLN3-216ENST00000565316 C2orf88Q9BSF0 95 aa10.31□□□□□ -0.76
CLN3-216ENST00000565316 CYSLTR1Q9Y271 337 aa10.31□□□□□ -0.76
CLN3-216ENST00000565316 UBE2BP63146 152 aa10.3□□□□□ -0.76
CLN3-216ENST00000565316 ZC2HC1BQ5TFG8 222 aa10.3□□□□□ -0.76
CLN3-216ENST00000565316 IGIPA6NJ69 53 aa10.29□□□□□ -0.76
CLN3-216ENST00000565316 Q6ZN92 141 aa10.29□□□□□ -0.76
CLN3-216ENST00000565316 VCX2Q9H322 139 aa10.29□□□□□ -0.76
CLN3-216ENST00000565316 K7EMI3 77 aa10.28□□□□□ -0.76
CLN3-216ENST00000565316 PNRC1Q12796 327 aaPredicted RBP10.28□□□□□ -0.76
CLN3-216ENST00000565316 ORMDL2Q53FV1 153 aa10.28□□□□□ -0.76
CLN3-216ENST00000565316 ANAPC16Q96DE5 110 aa10.27□□□□□ -0.77
CLN3-216ENST00000565316 MT-ND4LP03901 98 aa10.26□□□□□ -0.77
CLN3-216ENST00000565316 Q8IZM0 81 aa10.26□□□□□ -0.77
CLN3-216ENST00000565316 PRSS2P07478 247 aa10.25□□□□□ -0.77
CLN3-216ENST00000565316 CKS1BP61024 79 aa10.25□□□□□ -0.77
CLN3-216ENST00000565316 C6orf226Q5I0X4 101 aa10.25□□□□□ -0.77
CLN3-216ENST00000565316 RPL13AP40429 203 aaKnown RBP10.24□□□□□ -0.77
CLN3-216ENST00000565316 TOMM7Q9P0U1 55 aa10.24□□□□□ -0.77
CLN3-216ENST00000565316 CARHSP1Q9Y2V2 147 aaKnown RBP10.24□□□□□ -0.77
CLN3-216ENST00000565316 ZNF861PO60384 105 aa10.23□□□□□ -0.77
CLN3-216ENST00000565316 ALKBH7Q9BT30 221 aaPredicted RBP10.23□□□□□ -0.77
CLN3-216ENST00000565316 NXT2Q9NPJ8 142 aaKnown RBP10.23□□□□□ -0.77
CLN3-216ENST00000565316 C22orf24Q9Y442 160 aa10.23□□□□□ -0.77
CLN3-216ENST00000565316 HERVK_113P63121 156 aa10.22□□□□□ -0.77
CLN3-216ENST00000565316 SEC11AP67812 179 aa10.22□□□□□ -0.77
CLN3-216ENST00000565316 PAPPA-AS1Q5QFB9 102 aa10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms