RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 RPL36AP83881 106 aaKnown RBP8.53□□□□□ -1.04
SHMT2-230ENST00000557427 HSD52Q0P140 79 aa8.53□□□□□ -1.04
SHMT2-230ENST00000557427 SERTAD4-AS1Q5TG53 156 aa8.53□□□□□ -1.04
SHMT2-230ENST00000557427 RPL36ALQ969Q0 106 aaKnown RBP8.53□□□□□ -1.04
SHMT2-230ENST00000557427 Q9H8V8 135 aa8.53□□□□□ -1.04
SHMT2-230ENST00000557427 RNF213Q63HN8 5207 aa8.52□□□□□ -1.04
SHMT2-230ENST00000557427 TRBV6-4A0A1B0GX49 114 aa8.52□□□□□ -1.05
SHMT2-230ENST00000557427 HERVK_113P61574 105 aa8.52□□□□□ -1.05
SHMT2-230ENST00000557427 SEC11AP67812 179 aa8.52□□□□□ -1.05
SHMT2-230ENST00000557427 FHL2Q14192 279 aa8.52□□□□□ -1.05
SHMT2-230ENST00000557427 DAZ4Q86SG3 579 aaKnown RBP8.52□□□□□ -1.05
SHMT2-230ENST00000557427 AMELXQ99217 191 aa8.52□□□□□ -1.05
SHMT2-230ENST00000557427 TIMM21Q9BVV7 248 aa8.52□□□□□ -1.05
SHMT2-230ENST00000557427 DAZ3Q9NR90 486 aaKnown RBP8.52□□□□□ -1.05
SHMT2-230ENST00000557427 A0A096LPF7 62 aa8.51□□□□□ -1.05
SHMT2-230ENST00000557427 TRGV4A0A0C4DH28 118 aa8.51□□□□□ -1.05
SHMT2-230ENST00000557427 KRTAP29-1A8MX34 341 aaPredicted RBP8.51□□□□□ -1.05
SHMT2-230ENST00000557427 H3BNG1 76 aa8.51□□□□□ -1.05
SHMT2-230ENST00000557427 KRTAP10-1P60331 282 aa8.51□□□□□ -1.05
SHMT2-230ENST00000557427 UBE2D3P61077 147 aa8.51□□□□□ -1.05
SHMT2-230ENST00000557427 UBE2D2P62837 147 aa8.51□□□□□ -1.05
SHMT2-230ENST00000557427 SLC25A29Q8N8R3 303 aa8.51□□□□□ -1.05
SHMT2-230ENST00000557427 VCX2Q9H322 139 aa8.51□□□□□ -1.05
SHMT2-230ENST00000557427 UBE2D4Q9Y2X8 147 aa8.51□□□□□ -1.05
SHMT2-230ENST00000557427 TRBV25-1A0A075B6N4 114 aa8.5□□□□□ -1.05
SHMT2-230ENST00000557427 FAM104AQ969W3 186 aa8.5□□□□□ -1.05
SHMT2-230ENST00000557427 OPRPNQ99935 248 aaPredicted RBP8.5□□□□□ -1.05
SHMT2-230ENST00000557427 PRADC1Q9BSG0 188 aa8.5□□□□□ -1.05
SHMT2-230ENST00000557427 PRO0255Q9UI72 69 aa8.5□□□□□ -1.05
SHMT2-230ENST00000557427 TRAV8-6A0A0B4J262 113 aa8.49□□□□□ -1.05
SHMT2-230ENST00000557427 IGHV3-38A0A0C4DH36 116 aa8.49□□□□□ -1.05
SHMT2-230ENST00000557427 MYMXA0A1B0GTQ4 84 aa8.49□□□□□ -1.05
SHMT2-230ENST00000557427 HAMPP81172 84 aa8.49□□□□□ -1.05
SHMT2-230ENST00000557427 MRPS36P82909 103 aaKnown RBP8.49□□□□□ -1.05
SHMT2-230ENST00000557427 TAL2Q16559 108 aa8.49□□□□□ -1.05
SHMT2-230ENST00000557427 ORAOV1Q8WV07 137 aa8.49□□□□□ -1.05
SHMT2-230ENST00000557427 CHAC1Q9BUX1 264 aa8.49□□□□□ -1.05
SHMT2-230ENST00000557427 TTTY13Q9BZ97 58 aa8.49□□□□□ -1.05
SHMT2-230ENST00000557427 PGPEP1Q9NXJ5 209 aa8.49□□□□□ -1.05
SHMT2-230ENST00000557427 ICOSQ9Y6W8 199 aa8.49□□□□□ -1.05
SHMT2-230ENST00000557427 LRP1Q07954 4544 aaKnown RBP8.48□□□□□ -1.05
SHMT2-230ENST00000557427 SMAGPQ0VAQ4 97 aa8.48□□□□□ -1.05
SHMT2-230ENST00000557427 GTSF1LQ9H1H1 148 aa8.48□□□□□ -1.05
SHMT2-230ENST00000557427 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.47□□□□□ -1.05
SHMT2-230ENST00000557427 IGKV2-29A2NJV5 120 aaPredicted RBP8.47□□□□□ -1.05
SHMT2-230ENST00000557427 GAGE12JA6NER3 117 aa8.47□□□□□ -1.05
SHMT2-230ENST00000557427 FAM229AH3BQW9 127 aa8.47□□□□□ -1.05
SHMT2-230ENST00000557427 ZNF25P17030 456 aaPredicted RBP8.47□□□□□ -1.05
SHMT2-230ENST00000557427 GAGE1Q13065 139 aa8.47□□□□□ -1.05
SHMT2-230ENST00000557427 GAGE4Q13068 117 aa8.47□□□□□ -1.05
SHMT2-230ENST00000557427 GAGE5Q13069 117 aa8.47□□□□□ -1.05
SHMT2-230ENST00000557427 MRPL23Q16540 153 aaKnown RBP8.47□□□□□ -1.05
SHMT2-230ENST00000557427 GAGE13Q4V321 117 aa8.47□□□□□ -1.05
SHMT2-230ENST00000557427 TMEM170BQ5T4T1 132 aa8.47□□□□□ -1.05
SHMT2-230ENST00000557427 Q6ZRN7 208 aaPredicted RBP8.47□□□□□ -1.05
SHMT2-230ENST00000557427 PLA2G2DQ9UNK4 145 aa8.47□□□□□ -1.05
SHMT2-230ENST00000557427 CSDC2Q9Y534 153 aaKnown RBP8.47□□□□□ -1.05
SHMT2-230ENST00000557427 COX11Q9Y6N1 276 aa8.47□□□□□ -1.05
SHMT2-230ENST00000557427 TMEM223A0PJW6 202 aa8.46□□□□□ -1.06
SHMT2-230ENST00000557427 A6NDN8 102 aa8.46□□□□□ -1.06
SHMT2-230ENST00000557427 LINC00694P0DN24 101 aa8.46□□□□□ -1.06
SHMT2-230ENST00000557427 GYPEP15421 78 aa8.46□□□□□ -1.06
SHMT2-230ENST00000557427 ZNF22P17026 224 aaPredicted RBP8.46□□□□□ -1.06
SHMT2-230ENST00000557427 LYPD5Q6UWN5 251 aa8.46□□□□□ -1.06
SHMT2-230ENST00000557427 A0A0J9YXV3 536 aa8.45□□□□□ -1.06
SHMT2-230ENST00000557427 TINCRA0A1B0GVN0 87 aa8.45□□□□□ -1.06
SHMT2-230ENST00000557427 H7C423 109 aa8.45□□□□□ -1.06
SHMT2-230ENST00000557427 TAX1BP3O14907 124 aa8.45□□□□□ -1.06
SHMT2-230ENST00000557427 LEPROTO15243 131 aa8.45□□□□□ -1.06
SHMT2-230ENST00000557427 NTM-AS1Q6ZSK4 140 aa8.45□□□□□ -1.06
SHMT2-230ENST00000557427 Q6ZUT4 128 aa8.45□□□□□ -1.06
SHMT2-230ENST00000557427 UPK3BQ9BT76 320 aa8.45□□□□□ -1.06
SHMT2-230ENST00000557427 TM2D2Q9BX73 214 aa8.45□□□□□ -1.06
SHMT2-230ENST00000557427 LOC100131303A0A0U1RQF7 123 aa8.44□□□□□ -1.06
SHMT2-230ENST00000557427 ZNF815PA8K554 130 aa8.44□□□□□ -1.06
SHMT2-230ENST00000557427 DGAT2L7PQ6IED9 249 aa8.44□□□□□ -1.06
SHMT2-230ENST00000557427 CEND1Q8N111 149 aa8.44□□□□□ -1.06
SHMT2-230ENST00000557427 PLEKHB2Q96CS7 222 aa8.44□□□□□ -1.06
SHMT2-230ENST00000557427 H3BRM9 83 aa8.43□□□□□ -1.06
SHMT2-230ENST00000557427 UBE2D1P51668 147 aa8.43□□□□□ -1.06
SHMT2-230ENST00000557427 TIRAPP58753 221 aa8.43□□□□□ -1.06
SHMT2-230ENST00000557427 TTC32Q5I0X7 151 aa8.43□□□□□ -1.06
SHMT2-230ENST00000557427 FAM19A3Q7Z5A8 133 aa8.43□□□□□ -1.06
SHMT2-230ENST00000557427 TMEM243Q9BU79 118 aa8.43□□□□□ -1.06
SHMT2-230ENST00000557427 J3QQQ9 107 aa8.42□□□□□ -1.06
SHMT2-230ENST00000557427 LGALS3P17931 250 aaKnown RBP8.42□□□□□ -1.06
SHMT2-230ENST00000557427 GCSHP23434 173 aa8.42□□□□□ -1.06
SHMT2-230ENST00000557427 LINC00469Q8N7U9 141 aa8.42□□□□□ -1.06
SHMT2-230ENST00000557427 IGLV5-45A0A087WSX0 123 aa8.41□□□□□ -1.06
SHMT2-230ENST00000557427 TSPEAR-AS2P59090 65 aa8.41□□□□□ -1.06
SHMT2-230ENST00000557427 RNASE13Q5GAN3 156 aaKnown RBP8.41□□□□□ -1.06
SHMT2-230ENST00000557427 UBE2L6O14933 153 aa8.4□□□□□ -1.06
SHMT2-230ENST00000557427 FXYD2P54710 66 aa8.4□□□□□ -1.06
SHMT2-230ENST00000557427 SCGB1D4Q6XE38 83 aa8.4□□□□□ -1.06
SHMT2-230ENST00000557427 Q6ZVH6 145 aa8.4□□□□□ -1.06
SHMT2-230ENST00000557427 OR5A1Q8NGJ0 315 aa8.4□□□□□ -1.06
SHMT2-230ENST00000557427 HIST1H4GQ99525 98 aa8.4□□□□□ -1.06
SHMT2-230ENST00000557427 SPANXB1Q9NS25 103 aaPredicted RBP8.4□□□□□ -1.06
SHMT2-230ENST00000557427 TRBV6-8A0A0A6YYG3 113 aa8.39□□□□□ -1.07
SHMT2-230ENST00000557427 IGHV1-58A0A0C4DH39 117 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms