RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 SMLR1H3BR10 107 aa1.36□□□□□ -2.19
SCFD1-219ENST00000556413 TAAR5O14804 337 aa1.36□□□□□ -2.19
SCFD1-219ENST00000556413 SSNA1O43805 119 aa1.36□□□□□ -2.19
SCFD1-219ENST00000556413 MPC2O95563 127 aa1.36□□□□□ -2.19
SCFD1-219ENST00000556413 TSPAN13O95857 204 aa1.36□□□□□ -2.19
SCFD1-219ENST00000556413 BCL2P10415 239 aa1.36□□□□□ -2.19
SCFD1-219ENST00000556413 TPT1P13693 172 aaKnown RBP1.36□□□□□ -2.19
SCFD1-219ENST00000556413 ATP6V0CP27449 155 aa1.36□□□□□ -2.19
SCFD1-219ENST00000556413 RPL12P30050 165 aaKnown RBP1.36□□□□□ -2.19
SCFD1-219ENST00000556413 AKR1C3P42330 323 aa1.36□□□□□ -2.19
SCFD1-219ENST00000556413 XCL1P47992 114 aa1.36□□□□□ -2.19
SCFD1-219ENST00000556413 SULT1A2P50226 295 aa1.36□□□□□ -2.19
SCFD1-219ENST00000556413 TAS2R45P59539 299 aa1.36□□□□□ -2.19
SCFD1-219ENST00000556413 IFITM3Q01628 133 aa1.36□□□□□ -2.19
SCFD1-219ENST00000556413 ACOT6Q3I5F7 207 aaPredicted RBP1.36□□□□□ -2.19
SCFD1-219ENST00000556413 Q6ZRU5 148 aa1.36□□□□□ -2.19
SCFD1-219ENST00000556413 C5orf17Q8NAS9 161 aa1.36□□□□□ -2.19
SCFD1-219ENST00000556413 ENKURQ8TC29 256 aa1.36□□□□□ -2.19
SCFD1-219ENST00000556413 SFRP2Q96HF1 295 aa1.36□□□□□ -2.19
SCFD1-219ENST00000556413 LINC01600Q96MT4 127 aa1.36□□□□□ -2.19
SCFD1-219ENST00000556413 TIMM17AQ99595 171 aa1.36□□□□□ -2.19
SCFD1-219ENST00000556413 RETNLBQ9BQ08 111 aa1.36□□□□□ -2.19
SCFD1-219ENST00000556413 PLAC8Q9NZF1 115 aa1.36□□□□□ -2.19
SCFD1-219ENST00000556413 EPDR1Q9UM22 224 aa1.36□□□□□ -2.19
SCFD1-219ENST00000556413 PHLDA3Q9Y5J5 127 aa1.36□□□□□ -2.19
SCFD1-219ENST00000556413 TRBV7-3A0A075B6L6 115 aa1.35□□□□□ -2.19
SCFD1-219ENST00000556413 A0A087WWC5 75 aa1.35□□□□□ -2.19
SCFD1-219ENST00000556413 FXYD6-FXYD2A0A087WZ82 144 aa1.35□□□□□ -2.19
SCFD1-219ENST00000556413 IGHV1-24A0A0C4DH33 117 aa1.35□□□□□ -2.19
SCFD1-219ENST00000556413 TRBV6-1A0A0K0K1D8 114 aa1.35□□□□□ -2.19
SCFD1-219ENST00000556413 A0A1W2PNN7 141 aa1.35□□□□□ -2.19
SCFD1-219ENST00000556413 INMT-MINDY4F8WBC2 141 aa1.35□□□□□ -2.19
SCFD1-219ENST00000556413 K7EP13 123 aa1.35□□□□□ -2.19
SCFD1-219ENST00000556413 STAG3L2P0CL84 134 aa1.35□□□□□ -2.19
SCFD1-219ENST00000556413 STAG3L3P0CL85 134 aa1.35□□□□□ -2.19
SCFD1-219ENST00000556413 FOXA3P55318 350 aaPredicted RBP1.35□□□□□ -2.19
SCFD1-219ENST00000556413 RPL18AQ02543 176 aaKnown RBP1.35□□□□□ -2.19
SCFD1-219ENST00000556413 Q0VG73 95 aa1.35□□□□□ -2.19
SCFD1-219ENST00000556413 CIRBPQ14011 172 aaKnown RBP1.35□□□□□ -2.19
SCFD1-219ENST00000556413 MIAQ16674 131 aa1.35□□□□□ -2.19
SCFD1-219ENST00000556413 ATP6V1FQ16864 119 aa1.35□□□□□ -2.19
SCFD1-219ENST00000556413 C1orf137Q5JT78 98 aa1.35□□□□□ -2.19
SCFD1-219ENST00000556413 FAM74A1Q5RGS3 127 aa1.35□□□□□ -2.19
SCFD1-219ENST00000556413 FAM162BQ5T6X4 162 aa1.35□□□□□ -2.19
SCFD1-219ENST00000556413 SPANXN1Q5VSR9 72 aa1.35□□□□□ -2.19
SCFD1-219ENST00000556413 RPL7L1Q6DKI1 246 aaKnown RBP1.35□□□□□ -2.19
SCFD1-219ENST00000556413 RNASEKQ6P5S7 137 aaKnown RBP1.35□□□□□ -2.19
SCFD1-219ENST00000556413 FAM19A5Q7Z5A7 132 aaPredicted RBP1.35□□□□□ -2.19
SCFD1-219ENST00000556413 ZFP82Q8N141 532 aa1.35□□□□□ -2.19
SCFD1-219ENST00000556413 MIR7-3HGQ8N6C7 128 aa1.35□□□□□ -2.19
SCFD1-219ENST00000556413 RPL39LQ96EH5 51 aaKnown RBP1.35□□□□□ -2.19
SCFD1-219ENST00000556413 BATF3Q9NR55 127 aa1.35□□□□□ -2.19
SCFD1-219ENST00000556413 KCNIP2Q9NS61 270 aa1.35□□□□□ -2.19
SCFD1-219ENST00000556413 IL36BQ9NZH7 164 aa1.35□□□□□ -2.19
SCFD1-219ENST00000556413 TRBV25-1A0A075B6N4 114 aa1.34□□□□□ -2.19
SCFD1-219ENST00000556413 PIGBOS1A0A0B4J2F0 54 aa1.34□□□□□ -2.19
SCFD1-219ENST00000556413 RAB19A4D1S5 217 aa1.34□□□□□ -2.19
SCFD1-219ENST00000556413 MAP1LC3B2A6NCE7 125 aa1.34□□□□□ -2.19
SCFD1-219ENST00000556413 FABP5P3A8MUU1 101 aa1.34□□□□□ -2.19
SCFD1-219ENST00000556413 SMKR1H3BMG3 65 aa1.34□□□□□ -2.19
SCFD1-219ENST00000556413 UBE2L6O14933 153 aa1.34□□□□□ -2.19
SCFD1-219ENST00000556413 CCL25O15444 150 aa1.34□□□□□ -2.19
SCFD1-219ENST00000556413 NDUFS6O75380 124 aaKnown RBP1.34□□□□□ -2.19
SCFD1-219ENST00000556413 MT-ND6P03923 174 aa1.34□□□□□ -2.19
SCFD1-219ENST00000556413 UBE2G1P62253 170 aa1.34□□□□□ -2.19
SCFD1-219ENST00000556413 CNBPP62633 177 aaKnown RBP1.34□□□□□ -2.19
SCFD1-219ENST00000556413 ELOBQ15370 118 aa1.34□□□□□ -2.19
SCFD1-219ENST00000556413 STOML3Q8TAV4 291 aa1.34□□□□□ -2.19
SCFD1-219ENST00000556413 FAM213BQ8TBF2 198 aa1.34□□□□□ -2.19
SCFD1-219ENST00000556413 SUN5Q8TC36 379 aa1.34□□□□□ -2.19
SCFD1-219ENST00000556413 CARD19Q96LW7 228 aa1.34□□□□□ -2.19
SCFD1-219ENST00000556413 AQP10Q96PS8 301 aa1.34□□□□□ -2.19
SCFD1-219ENST00000556413 TMEM243Q9BU79 118 aa1.34□□□□□ -2.19
SCFD1-219ENST00000556413 MAP1LC3BQ9GZQ8 125 aa1.34□□□□□ -2.19
SCFD1-219ENST00000556413 TMEM242Q9NWH2 141 aa1.34□□□□□ -2.19
SCFD1-219ENST00000556413 PSORS1C2Q9UIG4 136 aa1.34□□□□□ -2.19
SCFD1-219ENST00000556413 LENEPQ9Y5L5 61 aa1.34□□□□□ -2.19
SCFD1-219ENST00000556413 ALG5Q9Y673 324 aa1.34□□□□□ -2.19
SCFD1-219ENST00000556413 SSPOA2VEC9 5147 aa1.33□□□□□ -2.2
SCFD1-219ENST00000556413 TRAV16A0A0A6YYK6 109 aaPredicted RBP1.33□□□□□ -2.2
SCFD1-219ENST00000556413 TRBV10-1A0A0K0K1A3 114 aa1.33□□□□□ -2.2
SCFD1-219ENST00000556413 M0QY20 66 aa1.33□□□□□ -2.2
SCFD1-219ENST00000556413 BPY2O14599 106 aa1.33□□□□□ -2.2
SCFD1-219ENST00000556413 UPK1BO75841 260 aa1.33□□□□□ -2.2
SCFD1-219ENST00000556413 NCR2O95944 276 aa1.33□□□□□ -2.2
SCFD1-219ENST00000556413 CXorf1O96002 111 aa1.33□□□□□ -2.2
SCFD1-219ENST00000556413 LTAP01374 205 aa1.33□□□□□ -2.2
SCFD1-219ENST00000556413 OR5AL1P0C617 328 aa1.33□□□□□ -2.2
SCFD1-219ENST00000556413 SEC11BP0C7V7 166 aa1.33□□□□□ -2.2
SCFD1-219ENST00000556413 SMIM17P0DL12 118 aa1.33□□□□□ -2.2
SCFD1-219ENST00000556413 RAB4BP61018 213 aa1.33□□□□□ -2.2
SCFD1-219ENST00000556413 CCL20P78556 96 aa1.33□□□□□ -2.2
SCFD1-219ENST00000556413 IQCJQ1A5X6 159 aa1.33□□□□□ -2.2
SCFD1-219ENST00000556413 KRTAP13-4Q3LI77 160 aa1.33□□□□□ -2.2
SCFD1-219ENST00000556413 C9orf116Q5BN46 136 aaPredicted RBP1.33□□□□□ -2.2
SCFD1-219ENST00000556413 CENPWQ5EE01 88 aa1.33□□□□□ -2.2
SCFD1-219ENST00000556413 SAPCD1Q5SSQ6 148 aa1.33□□□□□ -2.2
SCFD1-219ENST00000556413 AMMECR1LQ6DCA0 310 aa1.33□□□□□ -2.2
SCFD1-219ENST00000556413 SPINK6Q6UWN8 80 aa1.33□□□□□ -2.2
SCFD1-219ENST00000556413 C5orf38Q86SI9 138 aa1.33□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 89.1 ms