RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 SEC11CQ9BY50 192 aa10.13□□□□□ -0.79
CCDC88C-209ENST00000554872 IGLV4-69A0A075B6H9 119 aa10.12□□□□□ -0.79
CCDC88C-209ENST00000554872 Q8N8P6 123 aa10.12□□□□□ -0.79
CCDC88C-209ENST00000554872 DPH3Q96FX2 82 aa10.12□□□□□ -0.79
CCDC88C-209ENST00000554872 IFITM10A6NMD0 228 aa10.11□□□□□ -0.79
CCDC88C-209ENST00000554872 MAJINQ3KP22 176 aa10.11□□□□□ -0.79
CCDC88C-209ENST00000554872 LINC00526Q96FQ7 95 aa10.11□□□□□ -0.79
CCDC88C-209ENST00000554872 LRP1Q07954 4544 aaKnown RBP10.1□□□□□ -0.79
CCDC88C-209ENST00000554872 IGLV4-3A0A075B6K6 122 aa10.1□□□□□ -0.79
CCDC88C-209ENST00000554872 IGKV2-24A0A0C4DH68 120 aa10.1□□□□□ -0.79
CCDC88C-209ENST00000554872 HNRNPA3P51991 378 aaKnown RBP10.1□□□□□ -0.79
CCDC88C-209ENST00000554872 RNF151Q2KHN1 245 aa10.1□□□□□ -0.79
CCDC88C-209ENST00000554872 C5orf38Q86SI9 138 aa10.1□□□□□ -0.79
CCDC88C-209ENST00000554872 C7orf33Q8WU49 177 aa10.1□□□□□ -0.79
CCDC88C-209ENST00000554872 NXT2Q9NPJ8 142 aaKnown RBP10.1□□□□□ -0.79
CCDC88C-209ENST00000554872 PKHD1L1Q86WI1 4243 aa10.1□□□□□ -0.79
CCDC88C-209ENST00000554872 ORMDL2Q53FV1 153 aa10.09□□□□□ -0.79
CCDC88C-209ENST00000554872 Q6ZRU5 148 aa10.09□□□□□ -0.79
CCDC88C-209ENST00000554872 STPG4Q8N801 248 aa10.09□□□□□ -0.79
CCDC88C-209ENST00000554872 TMEM141Q96I45 108 aa10.09□□□□□ -0.79
CCDC88C-209ENST00000554872 OPRPNQ99935 248 aaPredicted RBP10.09□□□□□ -0.79
CCDC88C-209ENST00000554872 CYSLTR1Q9Y271 337 aa10.09□□□□□ -0.79
CCDC88C-209ENST00000554872 LOC107984640A0A0U1RRK4 108 aa10.08□□□□□ -0.8
CCDC88C-209ENST00000554872 PTTG1IPP53801 180 aa10.08□□□□□ -0.8
CCDC88C-209ENST00000554872 SPAG11BQ08648 103 aa10.08□□□□□ -0.8
CCDC88C-209ENST00000554872 C10orf91Q5T1B1 145 aa10.08□□□□□ -0.8
CCDC88C-209ENST00000554872 CAMK2N2Q96S95 79 aa10.08□□□□□ -0.8
CCDC88C-209ENST00000554872 A0A087WZ39 114 aa10.07□□□□□ -0.8
CCDC88C-209ENST00000554872 LOC389332A0A1B0GUA5 103 aa10.07□□□□□ -0.8
CCDC88C-209ENST00000554872 C2orf66Q6UXQ4 117 aa10.07□□□□□ -0.8
CCDC88C-209ENST00000554872 LINC01561Q8N1V8 128 aa10.07□□□□□ -0.8
CCDC88C-209ENST00000554872 MRPL35Q9NZE8 188 aaKnown RBP10.07□□□□□ -0.8
CCDC88C-209ENST00000554872 FAT3Q8TDW7 4589 aa10.07□□□□□ -0.8
CCDC88C-209ENST00000554872 G0S2P27469 103 aa10.06□□□□□ -0.8
CCDC88C-209ENST00000554872 LINC00242Q5T6M2 205 aa10.06□□□□□ -0.8
CCDC88C-209ENST00000554872 AMELXQ99217 191 aa10.06□□□□□ -0.8
CCDC88C-209ENST00000554872 TGIF2-C20orf24A0A0A6YYL0 155 aa10.05□□□□□ -0.8
CCDC88C-209ENST00000554872 IGIPA6NJ69 53 aa10.05□□□□□ -0.8
CCDC88C-209ENST00000554872 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.05□□□□□ -0.8
CCDC88C-209ENST00000554872 UBE2D1P51668 147 aa10.05□□□□□ -0.8
CCDC88C-209ENST00000554872 TEX43Q6ZNM6 134 aa10.05□□□□□ -0.8
CCDC88C-209ENST00000554872 FAM19A3Q7Z5A8 133 aa10.05□□□□□ -0.8
CCDC88C-209ENST00000554872 COMMD7Q86VX2 200 aa10.05□□□□□ -0.8
CCDC88C-209ENST00000554872 ORAOV1Q8WV07 137 aa10.05□□□□□ -0.8
CCDC88C-209ENST00000554872 GNB1LQ9BYB4 327 aa10.05□□□□□ -0.8
CCDC88C-209ENST00000554872 CARHSP1Q9Y2V2 147 aaKnown RBP10.05□□□□□ -0.8
CCDC88C-209ENST00000554872 S100PP25815 95 aa10.04□□□□□ -0.8
CCDC88C-209ENST00000554872 PRR3P79522 188 aaKnown RBP10.04□□□□□ -0.8
CCDC88C-209ENST00000554872 COX19Q49B96 90 aa10.04□□□□□ -0.8
CCDC88C-209ENST00000554872 Q6ZN92 141 aa10.04□□□□□ -0.8
CCDC88C-209ENST00000554872 LINC00173Q6ZV60 143 aa10.04□□□□□ -0.8
CCDC88C-209ENST00000554872 C2orf88Q9BSF0 95 aa10.04□□□□□ -0.8
CCDC88C-209ENST00000554872 TLX1NBP0CAT3 122 aa10.03□□□□□ -0.8
CCDC88C-209ENST00000554872 RHEBQ15382 184 aa10.03□□□□□ -0.8
CCDC88C-209ENST00000554872 LINC01546A6NGU7 62 aa10.02□□□□□ -0.81
CCDC88C-209ENST00000554872 LINC01549A6NIU2 74 aa10.02□□□□□ -0.81
CCDC88C-209ENST00000554872 NDUFA1O15239 70 aa10.02□□□□□ -0.81
CCDC88C-209ENST00000554872 MT-ND6P03923 174 aa10.02□□□□□ -0.81
CCDC88C-209ENST00000554872 KIAA0087Q14695 138 aa10.02□□□□□ -0.81
CCDC88C-209ENST00000554872 PAPPA-AS1Q5QFB9 102 aa10.02□□□□□ -0.81
CCDC88C-209ENST00000554872 TIMM17AQ99595 171 aa10.02□□□□□ -0.81
CCDC88C-209ENST00000554872 TOMM6Q96B49 74 aa10.01□□□□□ -0.81
CCDC88C-209ENST00000554872 VCX2Q9H322 139 aa10.01□□□□□ -0.81
CCDC88C-209ENST00000554872 GAGE2BQ13066 116 aa10□□□□□ -0.81
CCDC88C-209ENST00000554872 SEC11AP67812 179 aa9.99□□□□□ -0.81
CCDC88C-209ENST00000554872 ALKBH7Q9BT30 221 aaPredicted RBP9.99□□□□□ -0.81
CCDC88C-209ENST00000554872 TRBV30A0A0K0K1B3 111 aa9.98□□□□□ -0.81
CCDC88C-209ENST00000554872 RPL18AQ02543 176 aaKnown RBP9.98□□□□□ -0.81
CCDC88C-209ENST00000554872 KIAA1644Q3SXP7 199 aa9.98□□□□□ -0.81
CCDC88C-209ENST00000554872 SERTAD4-AS1Q5TG53 156 aa9.98□□□□□ -0.81
CCDC88C-209ENST00000554872 Q6ZRP5 223 aa9.98□□□□□ -0.81
CCDC88C-209ENST00000554872 ERASQ7Z444 233 aa9.98□□□□□ -0.81
CCDC88C-209ENST00000554872 C6orf48Q9UBA6 75 aa9.98□□□□□ -0.81
CCDC88C-209ENST00000554872 A0A1W2PNN7 141 aa9.97□□□□□ -0.81
CCDC88C-209ENST00000554872 MT1HL1P0DM35 61 aa9.97□□□□□ -0.81
CCDC88C-209ENST00000554872 C10orf25Q5T742 122 aa9.97□□□□□ -0.81
CCDC88C-209ENST00000554872 HERVK_113P63121 156 aa9.96□□□□□ -0.82
CCDC88C-209ENST00000554872 C9orf116Q5BN46 136 aaPredicted RBP9.96□□□□□ -0.82
CCDC88C-209ENST00000554872 UNQ6190/PRO20217Q6UXQ8 127 aa9.96□□□□□ -0.82
CCDC88C-209ENST00000554872 A0A0J9YXV3 536 aa9.95□□□□□ -0.82
CCDC88C-209ENST00000554872 ZC2HC1BQ5TFG8 222 aa9.95□□□□□ -0.82
CCDC88C-209ENST00000554872 SRSF9Q13242 221 aaKnown RBP eCLIP9.94□□□□□ -0.82
CCDC88C-209ENST00000554872 SPINK6Q6UWN8 80 aa9.94□□□□□ -0.82
CCDC88C-209ENST00000554872 Q8IZM0 81 aa9.94□□□□□ -0.82
CCDC88C-209ENST00000554872 MRPL18Q9H0U6 180 aaKnown RBP9.94□□□□□ -0.82
CCDC88C-209ENST00000554872 RPS10P5Q9NQ39 176 aa9.94□□□□□ -0.82
CCDC88C-209ENST00000554872 NDUFC2-KCTD14E9PQ53 114 aa9.93□□□□□ -0.82
CCDC88C-209ENST00000554872 ODF1Q14990 250 aa9.93□□□□□ -0.82
CCDC88C-209ENST00000554872 SCGB3A1Q96QR1 104 aa9.93□□□□□ -0.82
CCDC88C-209ENST00000554872 IGLV5-45A0A087WSX0 123 aa9.91□□□□□ -0.82
CCDC88C-209ENST00000554872 FABP9Q0Z7S8 132 aa9.91□□□□□ -0.82
CCDC88C-209ENST00000554872 PACRGQ96M98 296 aaPredicted RBP9.91□□□□□ -0.82
CCDC88C-209ENST00000554872 LINC01600Q96MT4 127 aa9.91□□□□□ -0.82
CCDC88C-209ENST00000554872 GEMIN7Q9H840 131 aaKnown RBP9.91□□□□□ -0.82
CCDC88C-209ENST00000554872 CDKN2A-AS1Q9UH64 79 aa9.91□□□□□ -0.82
CCDC88C-209ENST00000554872 TINCRA0A1B0GVN0 87 aa9.9□□□□□ -0.82
CCDC88C-209ENST00000554872 PRSS2P07478 247 aa9.9□□□□□ -0.82
CCDC88C-209ENST00000554872 C2orf82Q6UX34 121 aa9.9□□□□□ -0.82
CCDC88C-209ENST00000554872 FA2HQ7L5A8 372 aa9.9□□□□□ -0.82
CCDC88C-209ENST00000554872 SVBPQ8N300 66 aa9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 308 ms