RNA–Protein interactions for RNA: ENST00000551655.1

VPS29-209, Transcript of VPS29, retromer complex component, humanhuman

TSL 5

Gene VPS29, Length 766 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-209ENST00000551655 SFT2D1Q8WV19 159 aa8.15□□□□□ -1.1
VPS29-209ENST00000551655 ST20Q9HBF5 79 aa8.15□□□□□ -1.1
VPS29-209ENST00000551655 NDUFC2-KCTD14E9PQ53 114 aa8.14□□□□□ -1.11
VPS29-209ENST00000551655 F8WDY8 70 aa8.14□□□□□ -1.11
VPS29-209ENST00000551655 LINC00469Q8N7U9 141 aa8.14□□□□□ -1.11
VPS29-209ENST00000551655 IGHV3OR16-9A0A0B4J2B5 98 aa8.13□□□□□ -1.11
VPS29-209ENST00000551655 POLR2KP53803 58 aaKnown RBP8.13□□□□□ -1.11
VPS29-209ENST00000551655 KIAA0087Q14695 138 aa8.13□□□□□ -1.11
VPS29-209ENST00000551655 KCNRGQ8N5I3 272 aa8.13□□□□□ -1.11
VPS29-209ENST00000551655 USH2AO75445 5202 aa8.13□□□□□ -1.11
VPS29-209ENST00000551655 IGKV2D-26A0A0A0MRZ7 120 aa8.12□□□□□ -1.11
VPS29-209ENST00000551655 UPK1BO75841 260 aa8.12□□□□□ -1.11
VPS29-209ENST00000551655 TEX261Q6UWH6 196 aa8.12□□□□□ -1.11
VPS29-209ENST00000551655 FAM213BQ8TBF2 198 aa8.12□□□□□ -1.11
VPS29-209ENST00000551655 TRBV20OR9-2A0A075B6H5 130 aa8.11□□□□□ -1.11
VPS29-209ENST00000551655 FXYD6-FXYD2A0A087WZ82 144 aa8.11□□□□□ -1.11
VPS29-209ENST00000551655 TRBV27A0A0K0K1C4 114 aa8.11□□□□□ -1.11
VPS29-209ENST00000551655 FAM229BQ4G0N7 80 aa8.11□□□□□ -1.11
VPS29-209ENST00000551655 NUDT10Q8NFP7 164 aa8.11□□□□□ -1.11
VPS29-209ENST00000551655 C11orf52Q96A22 123 aa8.11□□□□□ -1.11
VPS29-209ENST00000551655 NUDT11Q96G61 164 aa8.11□□□□□ -1.11
VPS29-209ENST00000551655 XAGE1AQ9HD64 81 aa8.11□□□□□ -1.11
VPS29-209ENST00000551655 CYTL1Q9NRR1 136 aa8.11□□□□□ -1.11
VPS29-209ENST00000551655 CSDC2Q9Y534 153 aaKnown RBP8.11□□□□□ -1.11
VPS29-209ENST00000551655 RPL37AP8A6NKH3 93 aa8.1□□□□□ -1.11
VPS29-209ENST00000551655 FP248Q71RG6 208 aaPredicted RBP8.1□□□□□ -1.11
VPS29-209ENST00000551655 SMIM15Q7Z3B0 74 aa8.1□□□□□ -1.11
VPS29-209ENST00000551655 C3orf22Q8N5N4 141 aa8.1□□□□□ -1.11
VPS29-209ENST00000551655 MBD3L1Q8WWY6 194 aa8.1□□□□□ -1.11
VPS29-209ENST00000551655 FAM104AQ969W3 186 aa8.1□□□□□ -1.11
VPS29-209ENST00000551655 MRPL18Q9H0U6 180 aaKnown RBP8.1□□□□□ -1.11
VPS29-209ENST00000551655 GNG4P50150 75 aa8.09□□□□□ -1.11
VPS29-209ENST00000551655 LBHQ53QV2 105 aaPredicted RBP8.09□□□□□ -1.11
VPS29-209ENST00000551655 KRTAP13-1Q8IUC0 172 aa8.09□□□□□ -1.11
VPS29-209ENST00000551655 TRBV30A0A0K0K1B3 111 aa8.08□□□□□ -1.12
VPS29-209ENST00000551655 FCER1GP30273 86 aa8.08□□□□□ -1.12
VPS29-209ENST00000551655 SMKR1H3BMG3 65 aa8.07□□□□□ -1.12
VPS29-209ENST00000551655 CCL20P78556 96 aa8.07□□□□□ -1.12
VPS29-209ENST00000551655 MRPL55Q7Z7F7 128 aaKnown RBP8.07□□□□□ -1.12
VPS29-209ENST00000551655 PACRGQ96M98 296 aaPredicted RBP8.06□□□□□ -1.12
VPS29-209ENST00000551655 GNG13Q9P2W3 67 aa8.06□□□□□ -1.12
VPS29-209ENST00000551655 GAGE10A6NGK3 116 aa8.05□□□□□ -1.12
VPS29-209ENST00000551655 ZNF727A8MUV8 499 aa8.05□□□□□ -1.12
VPS29-209ENST00000551655 UBE2AP49459 152 aa8.05□□□□□ -1.12
VPS29-209ENST00000551655 RPL39P62891 51 aaKnown RBP8.05□□□□□ -1.12
VPS29-209ENST00000551655 CTAG1AP78358 180 aa8.05□□□□□ -1.12
VPS29-209ENST00000551655 LINC00167Q96N53 147 aa8.05□□□□□ -1.12
VPS29-209ENST00000551655 SMIM12Q96EX1 92 aa8.04□□□□□ -1.12
VPS29-209ENST00000551655 FAM210AQ96ND0 272 aa8.04□□□□□ -1.12
VPS29-209ENST00000551655 VCYO14598 125 aa8.03□□□□□ -1.12
VPS29-209ENST00000551655 S100ZQ8WXG8 99 aa8.03□□□□□ -1.12
VPS29-209ENST00000551655 TIMM21Q9BVV7 248 aa8.03□□□□□ -1.12
VPS29-209ENST00000551655 KRTAP4-7Q9BYR0 210 aa8.03□□□□□ -1.12
VPS29-209ENST00000551655 FCGBPQ9Y6R7 5405 aaPredicted RBP8.02□□□□□ -1.13
VPS29-209ENST00000551655 IFITM10A6NMD0 228 aa8.02□□□□□ -1.13
VPS29-209ENST00000551655 K7EN84 100 aa8.02□□□□□ -1.13
VPS29-209ENST00000551655 SMAGPQ0VAQ4 97 aa8.02□□□□□ -1.13
VPS29-209ENST00000551655 TP73-AS1Q9UF72 201 aa8.02□□□□□ -1.13
VPS29-209ENST00000551655 TGIF2-C20orf24A0A0A6YYL0 155 aa8.01□□□□□ -1.13
VPS29-209ENST00000551655 RAB4AP20338 218 aa8.01□□□□□ -1.13
VPS29-209ENST00000551655 PRLHP81277 87 aa8.01□□□□□ -1.13
VPS29-209ENST00000551655 AMN1Q8IY45 258 aa8.01□□□□□ -1.13
VPS29-209ENST00000551655 M0R2T5 61 aa8□□□□□ -1.13
VPS29-209ENST00000551655 ARPC5O15511 151 aa8□□□□□ -1.13
VPS29-209ENST00000551655 GIPP09681 153 aaPredicted RBP8□□□□□ -1.13
VPS29-209ENST00000551655 MANBALQ9NQG1 85 aa8□□□□□ -1.13
VPS29-209ENST00000551655 BIN3Q9NQY0 253 aa8□□□□□ -1.13
VPS29-209ENST00000551655 MED9Q9NWA0 146 aa8□□□□□ -1.13
VPS29-209ENST00000551655 SYNE2Q8WXH0 6885 aaKnown RBP8□□□□□ -1.13
VPS29-209ENST00000551655 NRACQ8N912 160 aa7.99□□□□□ -1.13
VPS29-209ENST00000551655 FLGP20930 4061 aaPredicted RBP7.98□□□□□ -1.13
VPS29-209ENST00000551655 SUMO2P61956 95 aaKnown RBP7.98□□□□□ -1.13
VPS29-209ENST00000551655 RPL32P62910 135 aaKnown RBP7.98□□□□□ -1.13
VPS29-209ENST00000551655 HBBP68871 147 aa7.98□□□□□ -1.13
VPS29-209ENST00000551655 PNRC1Q12796 327 aaPredicted RBP7.98□□□□□ -1.13
VPS29-209ENST00000551655 SPAG11AQ6PDA7 123 aa7.98□□□□□ -1.13
VPS29-209ENST00000551655 DAND5Q8N907 189 aa7.98□□□□□ -1.13
VPS29-209ENST00000551655 KIR2DL4Q99706 377 aa7.98□□□□□ -1.13
VPS29-209ENST00000551655 UMAD1C9J7I0 102 aa7.97□□□□□ -1.13
VPS29-209ENST00000551655 SCO1O75880 301 aa7.97□□□□□ -1.13
VPS29-209ENST00000551655 LCE1DQ5T752 114 aa7.97□□□□□ -1.13
VPS29-209ENST00000551655 OCC1Q8TAD7 63 aa7.97□□□□□ -1.13
VPS29-209ENST00000551655 TMEM18Q96B42 140 aa7.97□□□□□ -1.13
VPS29-209ENST00000551655 TMEM191AQ9H0A3 160 aa7.97□□□□□ -1.13
VPS29-209ENST00000551655 TOMM7Q9P0U1 55 aa7.97□□□□□ -1.13
VPS29-209ENST00000551655 IGKV2-28A0A075B6P5 120 aa7.94□□□□□ -1.14
VPS29-209ENST00000551655 GATCO43716 136 aaKnown RBP7.94□□□□□ -1.14
VPS29-209ENST00000551655 IGKV2D-28P01615 120 aa7.94□□□□□ -1.14
VPS29-209ENST00000551655 CKS1BP61024 79 aa7.94□□□□□ -1.14
VPS29-209ENST00000551655 MRPS36P82909 103 aaKnown RBP7.94□□□□□ -1.14
VPS29-209ENST00000551655 LINC00299Q6ZSB3 139 aa7.94□□□□□ -1.14
VPS29-209ENST00000551655 Q8NBF4 154 aa7.94□□□□□ -1.14
VPS29-209ENST00000551655 PLEKHB2Q96CS7 222 aa7.94□□□□□ -1.14
VPS29-209ENST00000551655 IGLV8-61A0A075B6I0 122 aa7.93□□□□□ -1.14
VPS29-209ENST00000551655 PDE6DO43924 150 aa7.93□□□□□ -1.14
VPS29-209ENST00000551655 PRSS2P07478 247 aa7.93□□□□□ -1.14
VPS29-209ENST00000551655 PCOTHQ58A44 107 aa7.93□□□□□ -1.14
VPS29-209ENST00000551655 SPANXA1Q9NS26 97 aa7.93□□□□□ -1.14
VPS29-209ENST00000551655 A0A1B0GVG6 124 aa7.92□□□□□ -1.14
VPS29-209ENST00000551655 FAM19A1Q7Z5A9 133 aa7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms