RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 NSD1Q96L73 2696 aaPredicted RBP13.05□□□□□ -0.32
PRPF40B-208ENST00000548436 DEFB130BP0DP73 79 aa13.04□□□□□ -0.32
PRPF40B-208ENST00000548436 DEFB130AP0DP74 79 aa13.04□□□□□ -0.32
PRPF40B-208ENST00000548436 DAND5Q8N907 189 aa13.04□□□□□ -0.32
PRPF40B-208ENST00000548436 F5H768 121 aa13.04□□□□□ -0.32
PRPF40B-208ENST00000548436 Q9H8V8 135 aa13.04□□□□□ -0.32
PRPF40B-208ENST00000548436 KIR2DL5BQ8NHK3 375 aa13.03□□□□□ -0.32
PRPF40B-208ENST00000548436 X6R8D5 127 aa13.03□□□□□ -0.32
PRPF40B-208ENST00000548436 H7C423 109 aa13.03□□□□□ -0.32
PRPF40B-208ENST00000548436 INSL3P51460 131 aa13.03□□□□□ -0.32
PRPF40B-208ENST00000548436 GAGE6Q13070 117 aa13.03□□□□□ -0.32
PRPF40B-208ENST00000548436 TRBV6-8A0A0A6YYG3 113 aa13.02□□□□□ -0.33
PRPF40B-208ENST00000548436 LINC00612Q8N6U2 182 aa13.02□□□□□ -0.33
PRPF40B-208ENST00000548436 HIVEP1P15822 2718 aa13.02□□□□□ -0.33
PRPF40B-208ENST00000548436 Q1RN00 199 aa13.01□□□□□ -0.33
PRPF40B-208ENST00000548436 ZNF625Q96I27 306 aaPredicted RBP13.01□□□□□ -0.33
PRPF40B-208ENST00000548436 MAST4O15021 2626 aa13.01□□□□□ -0.33
PRPF40B-208ENST00000548436 C9orf66Q5T8R8 295 aa13.01□□□□□ -0.33
PRPF40B-208ENST00000548436 TENM1Q9UKZ4 2725 aa13□□□□□ -0.33
PRPF40B-208ENST00000548436 IGLV4-60A0A075B6I1 120 aa13□□□□□ -0.33
PRPF40B-208ENST00000548436 RNF183Q96D59 192 aa13□□□□□ -0.33
PRPF40B-208ENST00000548436 F8P00451 2351 aa12.99□□□□□ -0.33
PRPF40B-208ENST00000548436 NBEAL2Q6ZNJ1 2754 aa12.99□□□□□ -0.33
PRPF40B-208ENST00000548436 IFITM1P13164 125 aa12.99□□□□□ -0.33
PRPF40B-208ENST00000548436 J3QR89 54 aa12.98□□□□□ -0.33
PRPF40B-208ENST00000548436 CIRBPQ14011 172 aaKnown RBP12.98□□□□□ -0.33
PRPF40B-208ENST00000548436 TRBV30A0A0K0K1B3 111 aa12.98□□□□□ -0.33
PRPF40B-208ENST00000548436 TRIAP1O43715 76 aa12.98□□□□□ -0.33
PRPF40B-208ENST00000548436 ATP6V0E2Q8NHE4 81 aa12.98□□□□□ -0.33
PRPF40B-208ENST00000548436 CHCHD5Q9BSY4 110 aa12.98□□□□□ -0.33
PRPF40B-208ENST00000548436 A0A0U1RRA0 63 aa12.97□□□□□ -0.33
PRPF40B-208ENST00000548436 FOXI1Q12951 378 aa12.97□□□□□ -0.33
PRPF40B-208ENST00000548436 IGKV3OR2-268A0A0C4DH90 116 aa12.97□□□□□ -0.33
PRPF40B-208ENST00000548436 SMIM9A6NGZ8 99 aa12.96□□□□□ -0.33
PRPF40B-208ENST00000548436 PRIMA1Q86XR5 153 aa12.96□□□□□ -0.33
PRPF40B-208ENST00000548436 LINC00308Q8TCZ7 52 aa12.96□□□□□ -0.33
PRPF40B-208ENST00000548436 GYPEP15421 78 aa12.95□□□□□ -0.34
PRPF40B-208ENST00000548436 ICOSQ9Y6W8 199 aa12.95□□□□□ -0.34
PRPF40B-208ENST00000548436 C9JAW5 83 aa12.93□□□□□ -0.34
PRPF40B-208ENST00000548436 FAM222AQ5U5X8 452 aa12.93□□□□□ -0.34
PRPF40B-208ENST00000548436 SOSTDC1Q6X4U4 206 aa12.93□□□□□ -0.34
PRPF40B-208ENST00000548436 TEN1Q86WV5 123 aa12.93□□□□□ -0.34
PRPF40B-208ENST00000548436 CITED1Q99966 193 aa12.93□□□□□ -0.34
PRPF40B-208ENST00000548436 DEFB135Q30KP9 77 aa12.93□□□□□ -0.34
PRPF40B-208ENST00000548436 MEIG1Q5JSS6 88 aa12.93□□□□□ -0.34
PRPF40B-208ENST00000548436 CARD19Q96LW7 228 aa12.93□□□□□ -0.34
PRPF40B-208ENST00000548436 GAGE12HA6NDE8 117 aa12.92□□□□□ -0.34
PRPF40B-208ENST00000548436 SLC25A20O43772 301 aa12.92□□□□□ -0.34
PRPF40B-208ENST00000548436 ATXN8Q156A1 80 aa12.92□□□□□ -0.34
PRPF40B-208ENST00000548436 RPL13AP40429 203 aaKnown RBP12.92□□□□□ -0.34
PRPF40B-208ENST00000548436 HERV-K104P63124 156 aa12.92□□□□□ -0.34
PRPF40B-208ENST00000548436 IGHV3OR16-9A0A0B4J2B5 98 aa12.91□□□□□ -0.34
PRPF40B-208ENST00000548436 DEFB4AO15263 64 aa12.91□□□□□ -0.34
PRPF40B-208ENST00000548436 ANKRD29Q8N6D5 301 aa12.91□□□□□ -0.34
PRPF40B-208ENST00000548436 PRO0255Q9UI72 69 aa12.91□□□□□ -0.34
PRPF40B-208ENST00000548436 TRRAPQ9Y4A5 3859 aa12.9□□□□□ -0.34
PRPF40B-208ENST00000548436 LINC01620Q4KN68 170 aa12.9□□□□□ -0.34
PRPF40B-208ENST00000548436 COX7B2Q8TF08 81 aa12.9□□□□□ -0.34
PRPF40B-208ENST00000548436 SPATA25Q9BR10 227 aa12.9□□□□□ -0.34
PRPF40B-208ENST00000548436 LYRM9A8MSI8 78 aa12.89□□□□□ -0.35
PRPF40B-208ENST00000548436 PPDPFLQ8WWR9 84 aa12.89□□□□□ -0.35
PRPF40B-208ENST00000548436 ATRQ13535 2644 aa12.89□□□□□ -0.35
PRPF40B-208ENST00000548436 TEP1Q99973 2627 aaKnown RBP12.89□□□□□ -0.35
PRPF40B-208ENST00000548436 A0A096LPF7 62 aa12.89□□□□□ -0.35
PRPF40B-208ENST00000548436 TOMM7Q9P0U1 55 aa12.88□□□□□ -0.35
PRPF40B-208ENST00000548436 LINC00959A0A1B0GUT2 108 aa12.87□□□□□ -0.35
PRPF40B-208ENST00000548436 M0QXV9 152 aa12.87□□□□□ -0.35
PRPF40B-208ENST00000548436 APOC4P55056 127 aa12.87□□□□□ -0.35
PRPF40B-208ENST00000548436 IGHV4-28A0A0C4DH34 117 aa12.87□□□□□ -0.35
PRPF40B-208ENST00000548436 CLEC2BQ92478 149 aa12.87□□□□□ -0.35
PRPF40B-208ENST00000548436 A0A087WZ39 114 aa12.86□□□□□ -0.35
PRPF40B-208ENST00000548436 TMEM262E9PQX1 116 aa12.86□□□□□ -0.35
PRPF40B-208ENST00000548436 PAX4O43316 350 aa12.86□□□□□ -0.35
PRPF40B-208ENST00000548436 COX6CP09669 75 aa12.86□□□□□ -0.35
PRPF40B-208ENST00000548436 C5orf38Q86SI9 138 aa12.86□□□□□ -0.35
PRPF40B-208ENST00000548436 COPS9Q8WXC6 57 aa12.86□□□□□ -0.35
PRPF40B-208ENST00000548436 SIGMAR1Q99720 223 aa12.85□□□□□ -0.35
PRPF40B-208ENST00000548436 A0A1B0GUV1 79 aa12.84□□□□□ -0.35
PRPF40B-208ENST00000548436 TRBV10-2A0A0K0K1G8 114 aa12.84□□□□□ -0.35
PRPF40B-208ENST00000548436 WFDC9Q8NEX5 89 aa12.83□□□□□ -0.36
PRPF40B-208ENST00000548436 LINC01600Q96MT4 127 aa12.83□□□□□ -0.36
PRPF40B-208ENST00000548436 CELA1Q9UNI1 258 aa12.83□□□□□ -0.36
PRPF40B-208ENST00000548436 Q8NAQ8 132 aa12.82□□□□□ -0.36
PRPF40B-208ENST00000548436 LST1O00453 97 aa12.82□□□□□ -0.36
PRPF40B-208ENST00000548436 MIR7-3HGQ8N6C7 128 aa12.82□□□□□ -0.36
PRPF40B-208ENST00000548436 CDIP1Q9H305 208 aa12.82□□□□□ -0.36
PRPF40B-208ENST00000548436 DAD1P61803 113 aa12.81□□□□□ -0.36
PRPF40B-208ENST00000548436 CLPSL2Q6UWE3 100 aa12.81□□□□□ -0.36
PRPF40B-208ENST00000548436 PPDPFQ9H3Y8 114 aa12.81□□□□□ -0.36
PRPF40B-208ENST00000548436 XCL1P47992 114 aa12.81□□□□□ -0.36
PRPF40B-208ENST00000548436 SHISA2Q6UWI4 295 aa12.8□□□□□ -0.36
PRPF40B-208ENST00000548436 NTN5Q8WTR8 489 aaPredicted RBP12.8□□□□□ -0.36
PRPF40B-208ENST00000548436 MIFP14174 115 aa12.79□□□□□ -0.36
PRPF40B-208ENST00000548436 SS18Q15532 418 aa12.79□□□□□ -0.36
PRPF40B-208ENST00000548436 WIPF1O43516 503 aa12.78□□□□□ -0.36
PRPF40B-208ENST00000548436 IGHV4-30-4P0DP06 118 aa12.78□□□□□ -0.36
PRPF40B-208ENST00000548436 TRAV26-1A0A087WT03 109 aa12.77□□□□□ -0.36
PRPF40B-208ENST00000548436 LINC00158P58513 81 aa12.77□□□□□ -0.36
PRPF40B-208ENST00000548436 C2orf82Q6UX34 121 aa12.77□□□□□ -0.36
PRPF40B-208ENST00000548436 Q8N3U1 123 aa12.77□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms