RNA–Protein interactions for RNA: ENST00000545440.5

SNHG1-223, Transcript of small nucleolar RNA host gene 1, human

TSL 2 BASIC

Gene SNHG1, Length 754 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-223	ENST00000545440	IGHV3-64	A0A075B6Q5	118 aa		4.91	□□□□□ -1.62
SNHG1-223	ENST00000545440		A0A1B0GXF2	115 aa		4.91	□□□□□ -1.62
SNHG1-223	ENST00000545440		F8W036	122 aa		4.91	□□□□□ -1.62
SNHG1-223	ENST00000545440	SMKR1	H3BMG3	65 aa		4.91	□□□□□ -1.62
SNHG1-223	ENST00000545440	FCER1G	P30273	86 aa		4.91	□□□□□ -1.62
SNHG1-223	ENST00000545440	KRTAP10-4	P60372	401 aa	Predicted RBP	4.91	□□□□□ -1.62
SNHG1-223	ENST00000545440	RPL32	P62910	135 aa	Known RBP	4.91	□□□□□ -1.62
SNHG1-223	ENST00000545440	HBB	P68871	147 aa		4.91	□□□□□ -1.62
SNHG1-223	ENST00000545440	MRPL51	Q4U2R6	128 aa	Known RBP	4.91	□□□□□ -1.62
SNHG1-223	ENST00000545440	C20orf78	Q9BR46	151 aa		4.91	□□□□□ -1.62
SNHG1-223	ENST00000545440	CDC42SE2	Q9NRR3	84 aa		4.91	□□□□□ -1.62
SNHG1-223	ENST00000545440	CSDC2	Q9Y534	153 aa	Known RBP	4.91	□□□□□ -1.62
SNHG1-223	ENST00000545440	LINC00959	A0A1B0GUT2	108 aa		4.9	□□□□□ -1.63
SNHG1-223	ENST00000545440	TCAP	O15273	167 aa		4.9	□□□□□ -1.63
SNHG1-223	ENST00000545440	XCL1	P47992	114 aa		4.9	□□□□□ -1.63
SNHG1-223	ENST00000545440	PNRC1	Q12796	327 aa	Predicted RBP	4.9	□□□□□ -1.63
SNHG1-223	ENST00000545440	SS18	Q15532	418 aa		4.9	□□□□□ -1.63
SNHG1-223	ENST00000545440	MRPL54	Q6P161	138 aa	Known RBP	4.9	□□□□□ -1.63
SNHG1-223	ENST00000545440		Q75L30	129 aa		4.9	□□□□□ -1.63
SNHG1-223	ENST00000545440	ATP5L2	Q7Z4Y8	100 aa		4.9	□□□□□ -1.63
SNHG1-223	ENST00000545440	ZNF664	Q8N3J9	261 aa		4.9	□□□□□ -1.63
SNHG1-223	ENST00000545440	UBE2D4	Q9Y2X8	147 aa		4.9	□□□□□ -1.63
SNHG1-223	ENST00000545440	IGHV1-58	A0A0C4DH39	117 aa		4.89	□□□□□ -1.63
SNHG1-223	ENST00000545440		D6R8Y8	96 aa		4.89	□□□□□ -1.63
SNHG1-223	ENST00000545440	PANO1	I0J062	215 aa		4.89	□□□□□ -1.63
SNHG1-223	ENST00000545440	PHOX2A	O14813	284 aa		4.89	□□□□□ -1.63
SNHG1-223	ENST00000545440	CCL25	O15444	150 aa		4.89	□□□□□ -1.63
SNHG1-223	ENST00000545440	PPBP	P02775	128 aa		4.89	□□□□□ -1.63
SNHG1-223	ENST00000545440	CKS2	P33552	79 aa		4.89	□□□□□ -1.63
SNHG1-223	ENST00000545440	RAB14	P61106	215 aa		4.89	□□□□□ -1.63
SNHG1-223	ENST00000545440	HIGD2B	Q4VC39	106 aa		4.89	□□□□□ -1.63
SNHG1-223	ENST00000545440	CD164L2	Q6UWJ8	174 aa		4.89	□□□□□ -1.63
SNHG1-223	ENST00000545440	SPACA4	Q8TDM5	124 aa		4.89	□□□□□ -1.63
SNHG1-223	ENST00000545440	TIMM21	Q9BVV7	248 aa		4.89	□□□□□ -1.63
SNHG1-223	ENST00000545440	SMIM2	Q9BVW6	85 aa		4.89	□□□□□ -1.63
SNHG1-223	ENST00000545440	PKIG	Q9Y2B9	76 aa		4.89	□□□□□ -1.63
SNHG1-223	ENST00000545440	IGLV5-45	A0A087WSX0	123 aa		4.88	□□□□□ -1.63
SNHG1-223	ENST00000545440	KRTAP29-1	A8MX34	341 aa	Predicted RBP	4.88	□□□□□ -1.63
SNHG1-223	ENST00000545440	RPL37A	P61513	92 aa	Known RBP	4.88	□□□□□ -1.63
SNHG1-223	ENST00000545440	C1orf196	B1AJZ1	125 aa		4.87	□□□□□ -1.63
SNHG1-223	ENST00000545440	NPY	P01303	97 aa		4.87	□□□□□ -1.63
SNHG1-223	ENST00000545440	CHTF8	P0CG12	524 aa		4.87	□□□□□ -1.63
SNHG1-223	ENST00000545440	CLLU1	Q5K131	121 aa		4.87	□□□□□ -1.63
SNHG1-223	ENST00000545440	PET117	Q6UWS5	81 aa		4.87	□□□□□ -1.63
SNHG1-223	ENST00000545440		Q6ZUT4	128 aa		4.87	□□□□□ -1.63
SNHG1-223	ENST00000545440	ORMDL3	Q8N138	153 aa		4.87	□□□□□ -1.63
SNHG1-223	ENST00000545440	SPANXA1	Q9NS26	97 aa		4.87	□□□□□ -1.63
SNHG1-223	ENST00000545440		A0A087WYN8	130 aa		4.86	□□□□□ -1.63
SNHG1-223	ENST00000545440	MT-ND4L	P03901	98 aa		4.86	□□□□□ -1.63
SNHG1-223	ENST00000545440	COX6A2	Q02221	97 aa		4.86	□□□□□ -1.63
SNHG1-223	ENST00000545440	CARD19	Q96LW7	228 aa		4.86	□□□□□ -1.63
SNHG1-223	ENST00000545440	PLAC8	Q9NZF1	115 aa		4.86	□□□□□ -1.63
SNHG1-223	ENST00000545440	LAMTOR2	Q9Y2Q5	125 aa		4.86	□□□□□ -1.63
SNHG1-223	ENST00000545440	TRAV13-1	A0A0B4J241	112 aa		4.85	□□□□□ -1.63
SNHG1-223	ENST00000545440	COX7A2L	O14548	114 aa		4.85	□□□□□ -1.63
SNHG1-223	ENST00000545440	RPL39	P62891	51 aa	Known RBP	4.85	□□□□□ -1.63
SNHG1-223	ENST00000545440	MRPS36	P82909	103 aa	Known RBP	4.85	□□□□□ -1.63
SNHG1-223	ENST00000545440	RNASE13	Q5GAN3	156 aa	Known RBP	4.85	□□□□□ -1.63
SNHG1-223	ENST00000545440	UQCC3	Q6UW78	93 aa		4.85	□□□□□ -1.63
SNHG1-223	ENST00000545440	PRELID3A	Q96N28	172 aa		4.85	□□□□□ -1.63
SNHG1-223	ENST00000545440	LINC00474	Q9P2X8	69 aa		4.85	□□□□□ -1.63
SNHG1-223	ENST00000545440		A0A096LNI7	61 aa		4.84	□□□□□ -1.63
SNHG1-223	ENST00000545440	IGKV2-24	A0A0C4DH68	120 aa		4.84	□□□□□ -1.63
SNHG1-223	ENST00000545440	APOM	O95445	188 aa		4.84	□□□□□ -1.63
SNHG1-223	ENST00000545440	OXT	P01178	125 aa		4.84	□□□□□ -1.63
SNHG1-223	ENST00000545440	RPL24	P83731	157 aa	Known RBP	4.84	□□□□□ -1.63
SNHG1-223	ENST00000545440	SYCN	Q0VAF6	134 aa		4.84	□□□□□ -1.63
SNHG1-223	ENST00000545440	TMEM136	Q6ZRR5	245 aa		4.84	□□□□□ -1.63
SNHG1-223	ENST00000545440	FAM104A	Q969W3	186 aa		4.84	□□□□□ -1.63
SNHG1-223	ENST00000545440	IMMP2L	Q96T52	175 aa		4.84	□□□□□ -1.63
SNHG1-223	ENST00000545440	HERC1	Q15751	4861 aa		4.84	□□□□□ -1.64
SNHG1-223	ENST00000545440	PKHD1L1	Q86WI1	4243 aa		4.83	□□□□□ -1.64
SNHG1-223	ENST00000545440	IGLV4-69	A0A075B6H9	119 aa		4.83	□□□□□ -1.64
SNHG1-223	ENST00000545440		K7EMI3	77 aa		4.83	□□□□□ -1.64
SNHG1-223	ENST00000545440	ADCYAP1	P18509	176 aa		4.83	□□□□□ -1.64
SNHG1-223	ENST00000545440	RAB5A	P20339	215 aa		4.83	□□□□□ -1.64
SNHG1-223	ENST00000545440	IFI27	P40305	119 aa	Predicted RBP	4.83	□□□□□ -1.64
SNHG1-223	ENST00000545440	HNRNPA3	P51991	378 aa	Known RBP	4.83	□□□□□ -1.64
SNHG1-223	ENST00000545440	MAJIN	Q3KP22	176 aa		4.83	□□□□□ -1.64
SNHG1-223	ENST00000545440	OR10D4P	Q8NGN7	298 aa		4.83	□□□□□ -1.64
SNHG1-223	ENST00000545440	C7orf33	Q8WU49	177 aa		4.83	□□□□□ -1.64
SNHG1-223	ENST00000545440	LINC00526	Q96FQ7	95 aa		4.83	□□□□□ -1.64
SNHG1-223	ENST00000545440	DPH3	Q96FX2	82 aa		4.83	□□□□□ -1.64
SNHG1-223	ENST00000545440	C2orf48	Q96LS8	159 aa		4.83	□□□□□ -1.64
SNHG1-223	ENST00000545440	MAP1LC3A	Q9H492	121 aa		4.83	□□□□□ -1.64
SNHG1-223	ENST00000545440	PYGO1	Q9Y3Y4	419 aa		4.83	□□□□□ -1.64
SNHG1-223	ENST00000545440	TRAV9-1	A0A075B6T8	112 aa		4.82	□□□□□ -1.64
SNHG1-223	ENST00000545440	IGHV3OR16-9	A0A0B4J2B5	98 aa		4.82	□□□□□ -1.64
SNHG1-223	ENST00000545440	IFITM10	A6NMD0	228 aa		4.82	□□□□□ -1.64
SNHG1-223	ENST00000545440	SPAG11B	Q08648	103 aa		4.82	□□□□□ -1.64
SNHG1-223	ENST00000545440	STPG4	Q8N801	248 aa		4.82	□□□□□ -1.64
SNHG1-223	ENST00000545440	CAMK2N2	Q96S95	79 aa		4.82	□□□□□ -1.64
SNHG1-223	ENST00000545440	LRP1	Q07954	4544 aa	Known RBP	4.82	□□□□□ -1.64
SNHG1-223	ENST00000545440	IGLV4-3	A0A075B6K6	122 aa		4.81	□□□□□ -1.64
SNHG1-223	ENST00000545440	LOC107984640	A0A0U1RRK4	108 aa		4.81	□□□□□ -1.64
SNHG1-223	ENST00000545440	TMEM218	A2RU14	115 aa		4.81	□□□□□ -1.64
SNHG1-223	ENST00000545440		F8WDY8	70 aa		4.81	□□□□□ -1.64
SNHG1-223	ENST00000545440	PRR3	P79522	188 aa	Known RBP	4.81	□□□□□ -1.64
SNHG1-223	ENST00000545440	IFITM2	Q01629	132 aa		4.81	□□□□□ -1.64
SNHG1-223	ENST00000545440	ORMDL2	Q53FV1	153 aa		4.81	□□□□□ -1.64

Retrieved 100 of 20,778 RNA–protein pairs in 132.9 ms