RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 HIST3H2BBQ8N257 126 aa8.33□□□□□ -1.08
CLSTN3-208ENST00000538933 ZNF664Q8N3J9 261 aa8.33□□□□□ -1.08
CLSTN3-208ENST00000538933 IFI27L1Q96BM0 104 aa8.33□□□□□ -1.08
CLSTN3-208ENST00000538933 VCX2Q9H322 139 aa8.33□□□□□ -1.08
CLSTN3-208ENST00000538933 FAM30AQ9NZY2 134 aa8.33□□□□□ -1.08
CLSTN3-208ENST00000538933 KLK12Q9UKR0 248 aa8.33□□□□□ -1.08
CLSTN3-208ENST00000538933 CSDC2Q9Y534 153 aaKnown RBP8.33□□□□□ -1.08
CLSTN3-208ENST00000538933 IGLV4-60A0A075B6I1 120 aa8.32□□□□□ -1.08
CLSTN3-208ENST00000538933 IGIPA6NJ69 53 aa8.32□□□□□ -1.08
CLSTN3-208ENST00000538933 H0Y8G0 127 aa8.32□□□□□ -1.08
CLSTN3-208ENST00000538933 NPSP0C0P6 89 aa8.32□□□□□ -1.08
CLSTN3-208ENST00000538933 RNASE13Q5GAN3 156 aaKnown RBP8.32□□□□□ -1.08
CLSTN3-208ENST00000538933 CLPSL2Q6UWE3 100 aa8.32□□□□□ -1.08
CLSTN3-208ENST00000538933 Q8N3U1 123 aa8.32□□□□□ -1.08
CLSTN3-208ENST00000538933 OPRPNQ99935 248 aaPredicted RBP8.32□□□□□ -1.08
CLSTN3-208ENST00000538933 MAP1LC3CQ9BXW4 147 aa8.32□□□□□ -1.08
CLSTN3-208ENST00000538933 CDC42SE2Q9NRR3 84 aa8.32□□□□□ -1.08
CLSTN3-208ENST00000538933 IGLV4-3A0A075B6K6 122 aa8.31□□□□□ -1.08
CLSTN3-208ENST00000538933 C5orf52A6NGY3 159 aa8.31□□□□□ -1.08
CLSTN3-208ENST00000538933 IFITM10A6NMD0 228 aa8.31□□□□□ -1.08
CLSTN3-208ENST00000538933 MRPS36P82909 103 aaKnown RBP8.31□□□□□ -1.08
CLSTN3-208ENST00000538933 UBE2WQ96B02 151 aa8.31□□□□□ -1.08
CLSTN3-208ENST00000538933 PACRGQ96M98 296 aaPredicted RBP8.31□□□□□ -1.08
CLSTN3-208ENST00000538933 K7EP13 123 aa8.3□□□□□ -1.08
CLSTN3-208ENST00000538933 PLA2G1BP04054 148 aaKnown RBP8.3□□□□□ -1.08
CLSTN3-208ENST00000538933 REG3AQ06141 175 aa8.3□□□□□ -1.08
CLSTN3-208ENST00000538933 LINC00269Q8N2A0 174 aa8.3□□□□□ -1.08
CLSTN3-208ENST00000538933 OXTP01178 125 aa8.29□□□□□ -1.08
CLSTN3-208ENST00000538933 KRTAP10-4P60372 401 aaPredicted RBP8.29□□□□□ -1.08
CLSTN3-208ENST00000538933 KRTDAPP60985 99 aa8.29□□□□□ -1.08
CLSTN3-208ENST00000538933 PMVKQ15126 192 aa8.29□□□□□ -1.08
CLSTN3-208ENST00000538933 SS18Q15532 418 aa8.29□□□□□ -1.08
CLSTN3-208ENST00000538933 LINC00173Q6ZV60 143 aa8.29□□□□□ -1.08
CLSTN3-208ENST00000538933 BAALCQ8WXS3 180 aa8.29□□□□□ -1.08
CLSTN3-208ENST00000538933 TRAV8-3A0A0A6YYJ7 113 aa8.28□□□□□ -1.08
CLSTN3-208ENST00000538933 TRAV13-1A0A0B4J241 112 aa8.28□□□□□ -1.08
CLSTN3-208ENST00000538933 NFE4Q86UQ8 179 aa8.28□□□□□ -1.08
CLSTN3-208ENST00000538933 RMI2Q96E14 147 aa8.28□□□□□ -1.08
CLSTN3-208ENST00000538933 HIST1H2BLQ99880 126 aa8.28□□□□□ -1.08
CLSTN3-208ENST00000538933 Q9HAA7 133 aa8.28□□□□□ -1.08
CLSTN3-208ENST00000538933 MIAQ16674 131 aa8.27□□□□□ -1.09
CLSTN3-208ENST00000538933 ZC2HC1BQ5TFG8 222 aa8.27□□□□□ -1.09
CLSTN3-208ENST00000538933 IGKV2D-24A0A075B6R9 120 aa8.26□□□□□ -1.09
CLSTN3-208ENST00000538933 C20orf202A1L168 122 aa8.26□□□□□ -1.09
CLSTN3-208ENST00000538933 IBA57-AS1B1ANH7 110 aa8.26□□□□□ -1.09
CLSTN3-208ENST00000538933 SEC11AP67812 179 aa8.26□□□□□ -1.09
CLSTN3-208ENST00000538933 LINC00528Q8N1L1 170 aa8.26□□□□□ -1.09
CLSTN3-208ENST00000538933 AMELXQ99217 191 aa8.26□□□□□ -1.09
CLSTN3-208ENST00000538933 C1orf43Q9BWL3 253 aa8.26□□□□□ -1.09
CLSTN3-208ENST00000538933 CHTOPQ9Y3Y2 248 aaKnown RBP8.26□□□□□ -1.09
CLSTN3-208ENST00000538933 TNXBP22105 4242 aa8.25□□□□□ -1.09
CLSTN3-208ENST00000538933 IGLV10-54A0A075B6I4 117 aa8.25□□□□□ -1.09
CLSTN3-208ENST00000538933 IGLV5-52A0A0A0MRZ9 124 aa8.25□□□□□ -1.09
CLSTN3-208ENST00000538933 TRAV12-1A0A0B4J245 112 aa8.25□□□□□ -1.09
CLSTN3-208ENST00000538933 TRAV8-4A0A0B4J246 113 aa8.25□□□□□ -1.09
CLSTN3-208ENST00000538933 LINC00959A0A1B0GUT2 108 aa8.25□□□□□ -1.09
CLSTN3-208ENST00000538933 SYS1-DBNDD2H3BUS1 97 aa8.25□□□□□ -1.09
CLSTN3-208ENST00000538933 CCL25O15444 150 aa8.25□□□□□ -1.09
CLSTN3-208ENST00000538933 ENHOQ6UWT2 76 aa8.25□□□□□ -1.09
CLSTN3-208ENST00000538933 OR10D4PQ8NGN7 298 aa8.25□□□□□ -1.09
CLSTN3-208ENST00000538933 CST9LQ9H4G1 147 aa8.25□□□□□ -1.09
CLSTN3-208ENST00000538933 GEMIN7Q9H840 131 aaKnown RBP8.25□□□□□ -1.09
CLSTN3-208ENST00000538933 PRR34Q9NV39 138 aa8.25□□□□□ -1.09
CLSTN3-208ENST00000538933 LRCOL1A6NCL2 159 aa8.24□□□□□ -1.09
CLSTN3-208ENST00000538933 PSCAO43653 123 aa8.24□□□□□ -1.09
CLSTN3-208ENST00000538933 C3orf79P0CE67 100 aa8.24□□□□□ -1.09
CLSTN3-208ENST00000538933 PET117Q6UWS5 81 aa8.24□□□□□ -1.09
CLSTN3-208ENST00000538933 Q6ZSA8 131 aa8.24□□□□□ -1.09
CLSTN3-208ENST00000538933 F8VRH5 84 aa8.23□□□□□ -1.09
CLSTN3-208ENST00000538933 XCL1P47992 114 aa8.23□□□□□ -1.09
CLSTN3-208ENST00000538933 UBE2D1P51668 147 aa8.23□□□□□ -1.09
CLSTN3-208ENST00000538933 NTN5Q8WTR8 489 aaPredicted RBP8.23□□□□□ -1.09
CLSTN3-208ENST00000538933 CHCHD10Q8WYQ3 142 aaPredicted RBP8.23□□□□□ -1.09
CLSTN3-208ENST00000538933 FAM104AQ969W3 186 aa8.23□□□□□ -1.09
CLSTN3-208ENST00000538933 TM2D2Q9BX73 214 aa8.23□□□□□ -1.09
CLSTN3-208ENST00000538933 A0A0J9YXV3 536 aa8.22□□□□□ -1.09
CLSTN3-208ENST00000538933 AKR1D1P51857 326 aa8.22□□□□□ -1.09
CLSTN3-208ENST00000538933 HERVK_113P63121 156 aa8.22□□□□□ -1.09
CLSTN3-208ENST00000538933 CHAC1Q9BUX1 264 aa8.22□□□□□ -1.09
CLSTN3-208ENST00000538933 COX11Q9Y6N1 276 aa8.22□□□□□ -1.09
CLSTN3-208ENST00000538933 GAGE12HA6NDE8 117 aa8.21□□□□□ -1.1
CLSTN3-208ENST00000538933 SCGB1D1O95968 90 aa8.21□□□□□ -1.1
CLSTN3-208ENST00000538933 ODF1Q14990 250 aa8.21□□□□□ -1.1
CLSTN3-208ENST00000538933 LINC00469Q8N7U9 141 aa8.21□□□□□ -1.1
CLSTN3-208ENST00000538933 PMCHL2Q9BQD1 86 aa8.21□□□□□ -1.1
CLSTN3-208ENST00000538933 MRPL35Q9NZE8 188 aaKnown RBP8.21□□□□□ -1.1
CLSTN3-208ENST00000538933 TINCRA0A1B0GVN0 87 aa8.2□□□□□ -1.1
CLSTN3-208ENST00000538933 DPM2O94777 84 aa8.2□□□□□ -1.1
CLSTN3-208ENST00000538933 MALP21145 153 aa8.2□□□□□ -1.1
CLSTN3-208ENST00000538933 PLNP26678 52 aa8.2□□□□□ -1.1
CLSTN3-208ENST00000538933 TMEM170BQ5T4T1 132 aa8.2□□□□□ -1.1
CLSTN3-208ENST00000538933 LINC00242Q5T6M2 205 aa8.2□□□□□ -1.1
CLSTN3-208ENST00000538933 CD164L2Q6UWJ8 174 aa8.2□□□□□ -1.1
CLSTN3-208ENST00000538933 H3BRM9 83 aa8.19□□□□□ -1.1
CLSTN3-208ENST00000538933 IGKCP01834 107 aa8.19□□□□□ -1.1
CLSTN3-208ENST00000538933 IGLC3P0DOY3 106 aa8.19□□□□□ -1.1
CLSTN3-208ENST00000538933 LINC01545Q5VT33 79 aa8.19□□□□□ -1.1
CLSTN3-208ENST00000538933 IGLV4-69A0A075B6H9 119 aa8.18□□□□□ -1.1
CLSTN3-208ENST00000538933 C11orf86A6NJI1 115 aa8.18□□□□□ -1.1
CLSTN3-208ENST00000538933 COX7A2LO14548 114 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 87.9 ms