RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), human

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-222	ENST00000526025	LINC00310	P59036	64 aa		13.6	□□□□□ -0.23
CD44-222	ENST00000526025	PMCHL1	Q16048	86 aa		13.6	□□□□□ -0.23
CD44-222	ENST00000526025	DYNC1H1	Q14204	4646 aa	Known RBP	13.6	□□□□□ -0.23
CD44-222	ENST00000526025	IGHV1-58	A0A0C4DH39	117 aa		13.59	□□□□□ -0.23
CD44-222	ENST00000526025	COX7A2L	O14548	114 aa		13.59	□□□□□ -0.23
CD44-222	ENST00000526025	SEC11A	P67812	179 aa		13.59	□□□□□ -0.23
CD44-222	ENST00000526025	LINC00242	Q5T6M2	205 aa		13.59	□□□□□ -0.23
CD44-222	ENST00000526025	C15orf56	Q8N910	161 aa		13.59	□□□□□ -0.23
CD44-222	ENST00000526025	PMVK	Q15126	192 aa		13.58	□□□□□ -0.24
CD44-222	ENST00000526025	GVQW2	A0A096LPI5	108 aa	Predicted RBP	13.57	□□□□□ -0.24
CD44-222	ENST00000526025	PRSS1	P07477	247 aa		13.57	□□□□□ -0.24
CD44-222	ENST00000526025	ZC2HC1B	Q5TFG8	222 aa		13.57	□□□□□ -0.24
CD44-222	ENST00000526025	CST9L	Q9H4G1	147 aa		13.57	□□□□□ -0.24
CD44-222	ENST00000526025	IGLV5-52	A0A0A0MRZ9	124 aa		13.56	□□□□□ -0.24
CD44-222	ENST00000526025	C16orf90	A8MZG2	172 aa		13.56	□□□□□ -0.24
CD44-222	ENST00000526025	LINC01561	Q8N1V8	128 aa		13.56	□□□□□ -0.24
CD44-222	ENST00000526025	BIRC6	Q9NR09	4857 aa		13.56	□□□□□ -0.24
CD44-222	ENST00000526025	hDV102S1	A0JD36	115 aa		13.55	□□□□□ -0.24
CD44-222	ENST00000526025	MAL	P21145	153 aa		13.55	□□□□□ -0.24
CD44-222	ENST00000526025	HERVK_113	P63121	156 aa		13.55	□□□□□ -0.24
CD44-222	ENST00000526025	IGLV2-33	A0A075B6J2	118 aa	Predicted RBP	13.54	□□□□□ -0.24
CD44-222	ENST00000526025		A0A087WZ39	114 aa		13.54	□□□□□ -0.24
CD44-222	ENST00000526025	APOM	O95445	188 aa		13.54	□□□□□ -0.24
CD44-222	ENST00000526025	CNBP	P62633	177 aa	Known RBP	13.54	□□□□□ -0.24
CD44-222	ENST00000526025	TINCR	A0A1B0GVN0	87 aa		13.53	□□□□□ -0.24
CD44-222	ENST00000526025	COA6	Q5JTJ3	125 aa	Known RBP	13.53	□□□□□ -0.24
CD44-222	ENST00000526025	C5orf38	Q86SI9	138 aa		13.53	□□□□□ -0.24
CD44-222	ENST00000526025	FAM19A2	Q8N3H0	131 aa		13.53	□□□□□ -0.24
CD44-222	ENST00000526025	COX6A2	Q02221	97 aa		13.52	□□□□□ -0.25
CD44-222	ENST00000526025	IFI27L1	Q96BM0	104 aa		13.52	□□□□□ -0.25
CD44-222	ENST00000526025	LRP1B	Q9NZR2	4599 aa		13.51	□□□□□ -0.25
CD44-222	ENST00000526025	NUPR1	O60356	82 aa		13.51	□□□□□ -0.25
CD44-222	ENST00000526025	GCSH	P23434	173 aa		13.51	□□□□□ -0.25
CD44-222	ENST00000526025	OR10D4P	Q8NGN7	298 aa		13.51	□□□□□ -0.25
CD44-222	ENST00000526025	GEMIN7	Q9H840	131 aa	Known RBP	13.51	□□□□□ -0.25
CD44-222	ENST00000526025	IGHV3-64	A0A075B6Q5	118 aa		13.5	□□□□□ -0.25
CD44-222	ENST00000526025	IGLV5-45	A0A087WSX0	123 aa		13.5	□□□□□ -0.25
CD44-222	ENST00000526025	TRAV12-1	A0A0B4J245	112 aa		13.5	□□□□□ -0.25
CD44-222	ENST00000526025		A0A0J9YXV3	536 aa		13.5	□□□□□ -0.25
CD44-222	ENST00000526025	LEPROTL1	O95214	131 aa		13.5	□□□□□ -0.25
CD44-222	ENST00000526025	IGLC3	P0DOY3	106 aa		13.49	□□□□□ -0.25
CD44-222	ENST00000526025	FUS	P35637	526 aa	Known RBP eCLIP	13.49	□□□□□ -0.25
CD44-222	ENST00000526025	HIGD2B	Q4VC39	106 aa		13.49	□□□□□ -0.25
CD44-222	ENST00000526025	PACRG	Q96M98	296 aa	Predicted RBP	13.49	□□□□□ -0.25
CD44-222	ENST00000526025	HSPB8	Q9UJY1	196 aa		13.49	□□□□□ -0.25
CD44-222	ENST00000526025	TRAV16	A0A0A6YYK6	109 aa	Predicted RBP	13.48	□□□□□ -0.25
CD44-222	ENST00000526025	ZNF561-AS1	K7EIQ3	104 aa		13.48	□□□□□ -0.25
CD44-222	ENST00000526025	C9orf163	Q8N9P6	203 aa		13.48	□□□□□ -0.25
CD44-222	ENST00000526025		F8WDY8	70 aa		13.47	□□□□□ -0.25
CD44-222	ENST00000526025	NDUFA6	P56556	154 aa		13.47	□□□□□ -0.25
CD44-222	ENST00000526025	C2orf48	Q96LS8	159 aa		13.47	□□□□□ -0.25
CD44-222	ENST00000526025	SLPI	P03973	132 aa		13.46	□□□□□ -0.25
CD44-222	ENST00000526025	ORAOV1	Q8WV07	137 aa		13.46	□□□□□ -0.25
CD44-222	ENST00000526025	CDKN2A-AS1	Q9UH64	79 aa		13.46	□□□□□ -0.25
CD44-222	ENST00000526025	SPAG11B	Q08648	103 aa		13.45	□□□□□ -0.26
CD44-222	ENST00000526025	IGLV4-69	A0A075B6H9	119 aa		13.44	□□□□□ -0.26
CD44-222	ENST00000526025	KRTAP10-1	P60331	282 aa		13.44	□□□□□ -0.26
CD44-222	ENST00000526025	LINC00469	Q8N7U9	141 aa		13.44	□□□□□ -0.26
CD44-222	ENST00000526025	CHAC1	Q9BUX1	264 aa		13.44	□□□□□ -0.26
CD44-222	ENST00000526025	CHTOP	Q9Y3Y2	248 aa	Known RBP	13.43	□□□□□ -0.26
CD44-222	ENST00000526025		H3BRM9	83 aa		13.42	□□□□□ -0.26
CD44-222	ENST00000526025	DNAH8	Q96JB1	4490 aa		13.42	□□□□□ -0.26
CD44-222	ENST00000526025		F8VRH5	84 aa		13.41	□□□□□ -0.26
CD44-222	ENST00000526025	SYCN	Q0VAF6	134 aa		13.41	□□□□□ -0.26
CD44-222	ENST00000526025	KIAA0087	Q14695	138 aa		13.41	□□□□□ -0.26
CD44-222	ENST00000526025	CDK2AP2	O75956	126 aa		13.4	□□□□□ -0.26
CD44-222	ENST00000526025	FABP4	P15090	132 aa		13.4	□□□□□ -0.26
CD44-222	ENST00000526025	LINC00526	Q96FQ7	95 aa		13.4	□□□□□ -0.26
CD44-222	ENST00000526025	CARD19	Q96LW7	228 aa		13.4	□□□□□ -0.26
CD44-222	ENST00000526025	PKIG	Q9Y2B9	76 aa		13.4	□□□□□ -0.26
CD44-222	ENST00000526025	SMIM1	B2RUZ4	78 aa		13.39	□□□□□ -0.27
CD44-222	ENST00000526025	ZNF22	P17026	224 aa	Predicted RBP	13.39	□□□□□ -0.27
CD44-222	ENST00000526025		Q6ZSA8	131 aa		13.39	□□□□□ -0.27
CD44-222	ENST00000526025		Q8IZM0	81 aa		13.39	□□□□□ -0.27
CD44-222	ENST00000526025	CAMK2N2	Q96S95	79 aa		13.39	□□□□□ -0.27
CD44-222	ENST00000526025	C11orf86	A6NJI1	115 aa		13.38	□□□□□ -0.27
CD44-222	ENST00000526025	ODF1	Q14990	250 aa		13.38	□□□□□ -0.27
CD44-222	ENST00000526025	RNF151	Q2KHN1	245 aa		13.38	□□□□□ -0.27
CD44-222	ENST00000526025	MAP1LC3C	Q9BXW4	147 aa		13.38	□□□□□ -0.27
CD44-222	ENST00000526025	MRPL35	Q9NZE8	188 aa	Known RBP	13.38	□□□□□ -0.27
CD44-222	ENST00000526025	NDUFA1	O15239	70 aa		13.37	□□□□□ -0.27
CD44-222	ENST00000526025	LINC01620	Q4KN68	170 aa		13.37	□□□□□ -0.27
CD44-222	ENST00000526025	SDIM1	Q6ZPB5	146 aa		13.37	□□□□□ -0.27
CD44-222	ENST00000526025	APOB	P04114	4563 aa	Known RBP	13.37	□□□□□ -0.27
CD44-222	ENST00000526025	PRSS2	P07478	247 aa		13.36	□□□□□ -0.27
CD44-222	ENST00000526025		Q6ZRU5	148 aa		13.36	□□□□□ -0.27
CD44-222	ENST00000526025	IGLV5-39	A0A0G2JS06	123 aa		13.35	□□□□□ -0.27
CD44-222	ENST00000526025	KIAA1109	Q2LD37	5005 aa		13.34	□□□□□ -0.27
CD44-222	ENST00000526025	CXCL5	P42830	114 aa		13.34	□□□□□ -0.27
CD44-222	ENST00000526025	RYR1	P21817	5038 aa		13.34	□□□□□ -0.27
CD44-222	ENST00000526025	SPINK8	P0C7L1	97 aa		13.33	□□□□□ -0.28
CD44-222	ENST00000526025	PLN	P26678	52 aa		13.33	□□□□□ -0.28
CD44-222	ENST00000526025	TMEM170B	Q5T4T1	132 aa		13.33	□□□□□ -0.28
CD44-222	ENST00000526025	TRBV30	A0A0K0K1B3	111 aa		13.32	□□□□□ -0.28
CD44-222	ENST00000526025		H0Y8G0	127 aa		13.32	□□□□□ -0.28
CD44-222	ENST00000526025	SYS1-DBNDD2	H3BUS1	97 aa		13.32	□□□□□ -0.28
CD44-222	ENST00000526025	C6orf226	Q5I0X4	101 aa		13.32	□□□□□ -0.28
CD44-222	ENST00000526025	COX7B2	Q8TF08	81 aa		13.32	□□□□□ -0.28
CD44-222	ENST00000526025	TOMM7	Q9P0U1	55 aa		13.32	□□□□□ -0.28
CD44-222	ENST00000526025	S100A6	P06703	90 aa		13.31	□□□□□ -0.28

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