RNA–Protein interactions for RNA: ENST00000516665.1

RNU6-539P-201, Transcript of RNA, U6 small nuclear 539, pseudogene, humanhuman

BASIC

Gene RNU6-539P, Length 103 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-539P-201ENST00000516665 LTC4SQ16873 150 aa-5.18□□□□□ -3.24
RNU6-539P-201ENST00000516665 TMEM97Q5BJF2 176 aa-5.18□□□□□ -3.24
RNU6-539P-201ENST00000516665 CROCCP2Q86T23 111 aa-5.18□□□□□ -3.24
RNU6-539P-201ENST00000516665 SH3BGRL3Q9H299 93 aa-5.18□□□□□ -3.24
RNU6-539P-201ENST00000516665 CHMP5Q9NZZ3 219 aa-5.18□□□□□ -3.24
RNU6-539P-201ENST00000516665 KIAA1551Q9HCM1 1747 aa-5.18□□□□□ -3.24
RNU6-539P-201ENST00000516665 TRBV7-6A0A0J9YX20 115 aa-5.19□□□□□ -3.24
RNU6-539P-201ENST00000516665 TCRAP04437 139 aa-5.19□□□□□ -3.24
RNU6-539P-201ENST00000516665 PRNDQ9UKY0 176 aa-5.19□□□□□ -3.24
RNU6-539P-201ENST00000516665 DNAJC15Q9Y5T4 150 aa-5.19□□□□□ -3.24
RNU6-539P-201ENST00000516665 PRG4Q92954 1404 aaPredicted RBP-5.2□□□□□ -3.24
RNU6-539P-201ENST00000516665 BORCS7-ASMTA0A0B4J1R7 106 aa-5.2□□□□□ -3.24
RNU6-539P-201ENST00000516665 TRPC5OSA6NMA1 111 aa-5.2□□□□□ -3.24
RNU6-539P-201ENST00000516665 SFT2D2O95562 160 aa-5.2□□□□□ -3.24
RNU6-539P-201ENST00000516665 RRAS2P62070 204 aaPredicted RBP-5.2□□□□□ -3.24
RNU6-539P-201ENST00000516665 C10orf128Q5T292 105 aa-5.2□□□□□ -3.24
RNU6-539P-201ENST00000516665 SPANXN1Q5VSR9 72 aa-5.2□□□□□ -3.24
RNU6-539P-201ENST00000516665 GUCA1BQ9UMX6 200 aa-5.2□□□□□ -3.24
RNU6-539P-201ENST00000516665 PLEKHH2Q8IVE3 1493 aa-5.2□□□□□ -3.24
RNU6-539P-201ENST00000516665 KDM5CP41229 1560 aa-5.21□□□□□ -3.24
RNU6-539P-201ENST00000516665 MMP24-AS1A0A0U1RRL7 71 aa-5.21□□□□□ -3.24
RNU6-539P-201ENST00000516665 NDUFA3O95167 84 aa-5.21□□□□□ -3.24
RNU6-539P-201ENST00000516665 SIX6O95475 246 aa-5.21□□□□□ -3.24
RNU6-539P-201ENST00000516665 OR8I2Q8N0Y5 310 aa-5.21□□□□□ -3.24
RNU6-539P-201ENST00000516665 NCOR1P1Q9H4R4 102 aa-5.21□□□□□ -3.24
RNU6-539P-201ENST00000516665 MYH13Q9UKX3 1938 aa-5.21□□□□□ -3.24
RNU6-539P-201ENST00000516665 G3V2T6 193 aa-5.22□□□□□ -3.25
RNU6-539P-201ENST00000516665 DEXIO95424 95 aa-5.22□□□□□ -3.25
RNU6-539P-201ENST00000516665 PPP1R2P41236 205 aa-5.22□□□□□ -3.25
RNU6-539P-201ENST00000516665 C5orf38Q86SI9 138 aa-5.22□□□□□ -3.25
RNU6-539P-201ENST00000516665 WDFY4Q6ZS81 3184 aa-5.22□□□□□ -3.25
RNU6-539P-201ENST00000516665 A0A1B0GU69 56 aa-5.23□□□□□ -3.25
RNU6-539P-201ENST00000516665 SPAARA0A1B0GVQ0 90 aa-5.23□□□□□ -3.25
RNU6-539P-201ENST00000516665 CCDC172P0C7W6 258 aa-5.23□□□□□ -3.25
RNU6-539P-201ENST00000516665 S100A11P31949 105 aa-5.23□□□□□ -3.25
RNU6-539P-201ENST00000516665 RPL22P35268 128 aaKnown RBP-5.23□□□□□ -3.25
RNU6-539P-201ENST00000516665 SSR3Q9UNL2 185 aa-5.23□□□□□ -3.25
RNU6-539P-201ENST00000516665 FAM32AQ9Y421 112 aaKnown RBP-5.23□□□□□ -3.25
RNU6-539P-201ENST00000516665 NLRP1Q9C000 1473 aa-5.24□□□□□ -3.25
RNU6-539P-201ENST00000516665 CCDC122Q5T0U0 273 aa-5.24□□□□□ -3.25
RNU6-539P-201ENST00000516665 TTC9CQ8N5M4 171 aa-5.24□□□□□ -3.25
RNU6-539P-201ENST00000516665 COPZ2Q9P299 210 aa-5.24□□□□□ -3.25
RNU6-539P-201ENST00000516665 ERCC6Q03468 1493 aa-5.25□□□□□ -3.25
RNU6-539P-201ENST00000516665 DEFB106AQ8N104 65 aa-5.25□□□□□ -3.25
RNU6-539P-201ENST00000516665 CTNNBIP1Q9NSA3 81 aaPredicted RBP-5.25□□□□□ -3.25
RNU6-539P-201ENST00000516665 LRRC37AA6NMS7 1700 aa-5.26□□□□□ -3.25
RNU6-539P-201ENST00000516665 RBP4P02753 201 aa-5.26□□□□□ -3.25
RNU6-539P-201ENST00000516665 IGLC1P0CG04 106 aa-5.26□□□□□ -3.25
RNU6-539P-201ENST00000516665 CBLN1P23435 193 aa-5.26□□□□□ -3.25
RNU6-539P-201ENST00000516665 NMNAT1Q9HAN9 279 aaPredicted RBP-5.26□□□□□ -3.25
RNU6-539P-201ENST00000516665 PARVGQ9HBI0 331 aa-5.26□□□□□ -3.25
RNU6-539P-201ENST00000516665 USE1Q9NZ43 259 aa-5.26□□□□□ -3.25
RNU6-539P-201ENST00000516665 ARHGEF10O15013 1369 aa-5.27□□□□□ -3.25
RNU6-539P-201ENST00000516665 LOC100506127A0A0U1RQW1 187 aa-5.27□□□□□ -3.25
RNU6-539P-201ENST00000516665 SPTY2D1-AS1A0A0U1RR47 76 aa-5.27□□□□□ -3.25
RNU6-539P-201ENST00000516665 SNCAP37840 140 aa-5.27□□□□□ -3.25
RNU6-539P-201ENST00000516665 RPS29P62273 56 aaKnown RBP-5.27□□□□□ -3.25
RNU6-539P-201ENST00000516665 CLLU1Q5K131 121 aa-5.27□□□□□ -3.25
RNU6-539P-201ENST00000516665 S100A7L2Q5SY68 101 aa-5.27□□□□□ -3.25
RNU6-539P-201ENST00000516665 PRO1933Q9H354 126 aa-5.27□□□□□ -3.25
RNU6-539P-201ENST00000516665 PRO3102Q9H379 93 aa-5.27□□□□□ -3.25
RNU6-539P-201ENST00000516665 EDC4Q6P2E9 1401 aaKnown RBP-5.28□□□□□ -3.25
RNU6-539P-201ENST00000516665 CETN3O15182 167 aa-5.28□□□□□ -3.25
RNU6-539P-201ENST00000516665 TMED4Q7Z7H5 227 aa-5.28□□□□□ -3.25
RNU6-539P-201ENST00000516665 AGPAT3Q9NRZ7 376 aa-5.28□□□□□ -3.25
RNU6-539P-201ENST00000516665 LYRM2Q9NU23 88 aaPredicted RBP-5.28□□□□□ -3.25
RNU6-539P-201ENST00000516665 TET3O43151 1660 aa-5.28□□□□□ -3.26
RNU6-539P-201ENST00000516665 EIF3AQ14152 1382 aaKnown RBP-5.29□□□□□ -3.26
RNU6-539P-201ENST00000516665 DAPK1P53355 1430 aa-5.29□□□□□ -3.26
RNU6-539P-201ENST00000516665 HMGN4O00479 90 aa-5.29□□□□□ -3.26
RNU6-539P-201ENST00000516665 NMSQ5H8A3 153 aa-5.29□□□□□ -3.26
RNU6-539P-201ENST00000516665 A2MP01023 1474 aa-5.29□□□□□ -3.26
RNU6-539P-201ENST00000516665 LSM2Q9Y333 95 aaKnown RBP-5.3□□□□□ -3.26
RNU6-539P-201ENST00000516665 CEP170BQ9Y4F5 1589 aaPredicted RBP-5.3□□□□□ -3.26
RNU6-539P-201ENST00000516665 PDCD11Q14690 1871 aaKnown RBP-5.3□□□□□ -3.26
RNU6-539P-201ENST00000516665 FAM107AO95990 144 aa-5.31□□□□□ -3.26
RNU6-539P-201ENST00000516665 LIN52Q52LA3 116 aa-5.31□□□□□ -3.26
RNU6-539P-201ENST00000516665 AQP10Q96PS8 301 aa-5.31□□□□□ -3.26
RNU6-539P-201ENST00000516665 DYNLRB1Q9NP97 96 aa-5.31□□□□□ -3.26
RNU6-539P-201ENST00000516665 FAIMQ9NVQ4 179 aa-5.31□□□□□ -3.26
RNU6-539P-201ENST00000516665 EP400Q96L91 3159 aa-5.31□□□□□ -3.26
RNU6-539P-201ENST00000516665 HIST1H1DP16402 221 aaKnown RBP-5.32□□□□□ -3.26
RNU6-539P-201ENST00000516665 PSPHP78330 225 aa-5.32□□□□□ -3.26
RNU6-539P-201ENST00000516665 MYOZ3Q8TDC0 251 aa-5.32□□□□□ -3.26
RNU6-539P-201ENST00000516665 MYH3P11055 1940 aa-5.33□□□□□ -3.26
RNU6-539P-201ENST00000516665 MIC13Q5XKP0 118 aa-5.33□□□□□ -3.26
RNU6-539P-201ENST00000516665 FAM223AQ8IWN6 122 aa-5.33□□□□□ -3.26
RNU6-539P-201ENST00000516665 C9orf16Q9BUW7 83 aa-5.33□□□□□ -3.26
RNU6-539P-201ENST00000516665 SEC11CQ9BY50 192 aa-5.33□□□□□ -3.26
RNU6-539P-201ENST00000516665 SS18L2Q9UHA2 77 aa-5.33□□□□□ -3.26
RNU6-539P-201ENST00000516665 DIP2CQ9Y2E4 1556 aa-5.33□□□□□ -3.26
RNU6-539P-201ENST00000516665 ARAP2Q8WZ64 1704 aa-5.34□□□□□ -3.26
RNU6-539P-201ENST00000516665 TMEM78Q5T7P6 136 aa-5.34□□□□□ -3.26
RNU6-539P-201ENST00000516665 ZFYVE9O95405 1425 aa-5.34□□□□□ -3.26
RNU6-539P-201ENST00000516665 PLB1Q6P1J6 1458 aa-5.34□□□□□ -3.26
RNU6-539P-201ENST00000516665 PRDM15P57071 1507 aaPredicted RBP-5.34□□□□□ -3.26
RNU6-539P-201ENST00000516665 VPS13CQ709C8 3753 aa-5.34□□□□□ -3.26
RNU6-539P-201ENST00000516665 HLA-DRB4P13762 266 aa-5.35□□□□□ -3.27
RNU6-539P-201ENST00000516665 COX6B2Q6YFQ2 88 aa-5.35□□□□□ -3.27
RNU6-539P-201ENST00000516665 NXT2Q9NPJ8 142 aaKnown RBP-5.35□□□□□ -3.27
Retrieved 100 of 20,778 RNA–protein pairs in 140.3 ms