RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 RETNQ9HD89 108 aa6.3□□□□□ -1.4
LIMCH1-209ENST00000509277 TOMM7Q9P0U1 55 aa6.3□□□□□ -1.4
LIMCH1-209ENST00000509277 IGHV4-30-4P0DP06 118 aa6.3□□□□□ -1.4
LIMCH1-209ENST00000509277 HTN3P15516 51 aa6.3□□□□□ -1.4
LIMCH1-209ENST00000509277 KRTAP10-11P60412 298 aa6.3□□□□□ -1.4
LIMCH1-209ENST00000509277 ZFAND2AQ8N6M9 145 aa6.3□□□□□ -1.4
LIMCH1-209ENST00000509277 TIMM21Q9BVV7 248 aa6.3□□□□□ -1.4
LIMCH1-209ENST00000509277 C3orf22Q8N5N4 141 aa6.29□□□□□ -1.4
LIMCH1-209ENST00000509277 SLC25A29Q8N8R3 303 aa6.29□□□□□ -1.4
LIMCH1-209ENST00000509277 NDUFA12Q9UI09 145 aa6.29□□□□□ -1.4
LIMCH1-209ENST00000509277 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.29□□□□□ -1.4
LIMCH1-209ENST00000509277 INSP01308 110 aa6.29□□□□□ -1.4
LIMCH1-209ENST00000509277 TOMM6Q96B49 74 aa6.29□□□□□ -1.4
LIMCH1-209ENST00000509277 S100A7L2Q5SY68 101 aa6.28□□□□□ -1.4
LIMCH1-209ENST00000509277 MRPL53Q96EL3 112 aaKnown RBP6.28□□□□□ -1.4
LIMCH1-209ENST00000509277 DNAJC30Q96LL9 226 aa6.28□□□□□ -1.4
LIMCH1-209ENST00000509277 MDFICQ9P1T7 246 aa6.28□□□□□ -1.4
LIMCH1-209ENST00000509277 DEFB130BP0DP73 79 aa6.28□□□□□ -1.4
LIMCH1-209ENST00000509277 DEFB130AP0DP74 79 aa6.28□□□□□ -1.4
LIMCH1-209ENST00000509277 C11orf68Q9H3H3 251 aaKnown RBP6.28□□□□□ -1.4
LIMCH1-209ENST00000509277 I3L3M4 83 aa6.27□□□□□ -1.41
LIMCH1-209ENST00000509277 IGLV2-18A0A075B6J9 118 aa6.27□□□□□ -1.41
LIMCH1-209ENST00000509277 RBMY1A1P0DJD3 496 aaKnown RBP6.27□□□□□ -1.41
LIMCH1-209ENST00000509277 RBMY1CP0DJD4 496 aa6.27□□□□□ -1.41
LIMCH1-209ENST00000509277 RBMY1FQ15415 496 aaKnown RBP6.27□□□□□ -1.41
LIMCH1-209ENST00000509277 TRGV1A0A0A0MS02 117 aa6.27□□□□□ -1.41
LIMCH1-209ENST00000509277 IGHV3-16A0A0C4DH30 117 aa6.27□□□□□ -1.41
LIMCH1-209ENST00000509277 BAALC-AS2P0C853 105 aa6.27□□□□□ -1.41
LIMCH1-209ENST00000509277 P0DMU3 169 aa6.27□□□□□ -1.41
LIMCH1-209ENST00000509277 FAM231AP0DMU4 169 aa6.27□□□□□ -1.41
LIMCH1-209ENST00000509277 FAM231CP0DMU5 169 aa6.27□□□□□ -1.41
LIMCH1-209ENST00000509277 DAZ2Q13117 558 aaKnown RBP6.27□□□□□ -1.41
LIMCH1-209ENST00000509277 BEAN1Q3B7T3 259 aa6.27□□□□□ -1.41
LIMCH1-209ENST00000509277 DAZ4Q86SG3 579 aaKnown RBP6.27□□□□□ -1.41
LIMCH1-209ENST00000509277 DAZ3Q9NR90 486 aaKnown RBP6.27□□□□□ -1.41
LIMCH1-209ENST00000509277 IGHV1OR15-1A0A075B7D0 117 aa6.26□□□□□ -1.41
LIMCH1-209ENST00000509277 C14orf132Q9NPU4 83 aa6.26□□□□□ -1.41
LIMCH1-209ENST00000509277 UQCRQO14949 82 aa6.26□□□□□ -1.41
LIMCH1-209ENST00000509277 PPP1R17O96001 155 aa6.26□□□□□ -1.41
LIMCH1-209ENST00000509277 TRAV23DV6A0A075B6W5 121 aa6.26□□□□□ -1.41
LIMCH1-209ENST00000509277 PAPPA-AS1Q5QFB9 102 aa6.26□□□□□ -1.41
LIMCH1-209ENST00000509277 TMEM263Q8WUH6 116 aaKnown RBP6.26□□□□□ -1.41
LIMCH1-209ENST00000509277 NOP10Q9NPE3 64 aaKnown RBP6.26□□□□□ -1.41
LIMCH1-209ENST00000509277 ATP5G1P05496 136 aa6.25□□□□□ -1.41
LIMCH1-209ENST00000509277 CRYGDP07320 174 aa6.25□□□□□ -1.41
LIMCH1-209ENST00000509277 ADAMTSL4-AS1Q5T5F5 129 aa6.25□□□□□ -1.41
LIMCH1-209ENST00000509277 MUC4Q99102 2169 aa6.25□□□□□ -1.41
LIMCH1-209ENST00000509277 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.25□□□□□ -1.41
LIMCH1-209ENST00000509277 A0A0J9YXY3 114 aa6.25□□□□□ -1.41
LIMCH1-209ENST00000509277 IGKV2-29A2NJV5 120 aaPredicted RBP6.25□□□□□ -1.41
LIMCH1-209ENST00000509277 VCYO14598 125 aa6.25□□□□□ -1.41
LIMCH1-209ENST00000509277 IGHV3-30-3P0DP02 117 aa6.25□□□□□ -1.41
LIMCH1-209ENST00000509277 CMC4P56277 68 aaPredicted RBP6.25□□□□□ -1.41
LIMCH1-209ENST00000509277 LINC01559Q495D7 138 aa6.25□□□□□ -1.41
LIMCH1-209ENST00000509277 C20orf197Q8N268 126 aa6.25□□□□□ -1.41
LIMCH1-209ENST00000509277 TRGV2A0A075B6R0 118 aa6.24□□□□□ -1.41
LIMCH1-209ENST00000509277 SUMO4Q6EEV6 95 aa6.24□□□□□ -1.41
LIMCH1-209ENST00000509277 CYSTM1Q9H1C7 97 aa6.24□□□□□ -1.41
LIMCH1-209ENST00000509277 IGLV4-69A0A075B6H9 119 aa6.24□□□□□ -1.41
LIMCH1-209ENST00000509277 EIF4EBP3O60516 100 aaPredicted RBP6.24□□□□□ -1.41
LIMCH1-209ENST00000509277 BRK1Q8WUW1 75 aa6.24□□□□□ -1.41
LIMCH1-209ENST00000509277 C19orf73Q9NVV2 129 aa6.24□□□□□ -1.41
LIMCH1-209ENST00000509277 TENM3Q9P273 2699 aa6.24□□□□□ -1.41
LIMCH1-209ENST00000509277 SLPIP03973 132 aa6.24□□□□□ -1.41
LIMCH1-209ENST00000509277 TSHBP01222 138 aa6.23□□□□□ -1.41
LIMCH1-209ENST00000509277 APOC4P55056 127 aa6.23□□□□□ -1.41
LIMCH1-209ENST00000509277 C1orf158Q8N1D5 194 aa6.23□□□□□ -1.41
LIMCH1-209ENST00000509277 KLLNB2CW77 178 aa6.23□□□□□ -1.41
LIMCH1-209ENST00000509277 SMCR5Q8TEV8 140 aa6.22□□□□□ -1.41
LIMCH1-209ENST00000509277 LENEPQ9Y5L5 61 aa6.22□□□□□ -1.41
LIMCH1-209ENST00000509277 PIK3CD-AS1Q5SR53 167 aa6.22□□□□□ -1.41
LIMCH1-209ENST00000509277 Q9H8V8 135 aa6.22□□□□□ -1.41
LIMCH1-209ENST00000509277 ZNF415Q09FC8 603 aa6.21□□□□□ -1.42
LIMCH1-209ENST00000509277 Q6ZTI0 123 aa6.21□□□□□ -1.42
LIMCH1-209ENST00000509277 MPLKIPQ8TAP9 179 aa6.21□□□□□ -1.42
LIMCH1-209ENST00000509277 COX7CP15954 63 aa6.21□□□□□ -1.42
LIMCH1-209ENST00000509277 TGP01266 2768 aa6.21□□□□□ -1.42
LIMCH1-209ENST00000509277 A0A096LPF7 62 aa6.2□□□□□ -1.42
LIMCH1-209ENST00000509277 TIRAPP58753 221 aa6.2□□□□□ -1.42
LIMCH1-209ENST00000509277 TMEM243Q9BU79 118 aa6.2□□□□□ -1.42
LIMCH1-209ENST00000509277 PFN2P35080 140 aa6.2□□□□□ -1.42
LIMCH1-209ENST00000509277 POM121L12Q8N7R1 296 aa6.2□□□□□ -1.42
LIMCH1-209ENST00000509277 STAB2Q8WWQ8 2551 aa6.2□□□□□ -1.42
LIMCH1-209ENST00000509277 H3BT86 120 aa6.2□□□□□ -1.42
LIMCH1-209ENST00000509277 K7EIL1 84 aa6.2□□□□□ -1.42
LIMCH1-209ENST00000509277 LEPROTO15243 131 aa6.2□□□□□ -1.42
LIMCH1-209ENST00000509277 GIG44P09565 113 aaPredicted RBP6.2□□□□□ -1.42
LIMCH1-209ENST00000509277 RNASE3P12724 160 aaKnown RBP6.2□□□□□ -1.42
LIMCH1-209ENST00000509277 LINC00643Q86TS7 51 aa6.2□□□□□ -1.42
LIMCH1-209ENST00000509277 SBSPONQ8IVN8 264 aa6.2□□□□□ -1.42
LIMCH1-209ENST00000509277 SNURFQ9Y675 71 aa6.2□□□□□ -1.42
LIMCH1-209ENST00000509277 Q6Q795 121 aa6.19□□□□□ -1.42
LIMCH1-209ENST00000509277 TRBV6-1A0A0K0K1D8 114 aa6.19□□□□□ -1.42
LIMCH1-209ENST00000509277 TMEM223A0PJW6 202 aa6.19□□□□□ -1.42
LIMCH1-209ENST00000509277 NCR3O14931 201 aa6.19□□□□□ -1.42
LIMCH1-209ENST00000509277 DNHD1Q96M86 4753 aa6.19□□□□□ -1.42
LIMCH1-209ENST00000509277 A0A0B4J2C4 111 aa6.19□□□□□ -1.42
LIMCH1-209ENST00000509277 RBM3P98179 157 aaKnown RBP6.19□□□□□ -1.42
LIMCH1-209ENST00000509277 LINC00526Q96FQ7 95 aa6.19□□□□□ -1.42
LIMCH1-209ENST00000509277 TRGV4A0A0C4DH28 118 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms