RNA–Protein interactions for RNA: ENST00000495100.1

GPC1-209, Transcript of glypican 1, humanhuman

TSL 1 (best)

Gene GPC1, Length 3,525 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-209ENST00000495100 NSD1Q96L73 2696 aaPredicted RBP9.69□□□□□ -0.86
GPC1-209ENST00000495100 LINC01546A6NGU7 62 aa9.69□□□□□ -0.86
GPC1-209ENST00000495100 ZFAND6Q6FIF0 208 aa9.69□□□□□ -0.86
GPC1-209ENST00000495100 GAGE2AQ6NT46 116 aa9.69□□□□□ -0.86
GPC1-209ENST00000495100 ZNF469Q96JG9 3925 aaPredicted RBP9.69□□□□□ -0.86
GPC1-209ENST00000495100 TINCRA0A1B0GVN0 87 aa9.69□□□□□ -0.86
GPC1-209ENST00000495100 MIR7-3HGQ8N6C7 128 aa9.69□□□□□ -0.86
GPC1-209ENST00000495100 LINC01006Q8NI28 216 aa9.69□□□□□ -0.86
GPC1-209ENST00000495100 B5MCH6 92 aa9.68□□□□□ -0.86
GPC1-209ENST00000495100 GYPEP15421 78 aa9.68□□□□□ -0.86
GPC1-209ENST00000495100 FBN1P35555 2871 aaKnown RBP9.68□□□□□ -0.86
GPC1-209ENST00000495100 SLPIP03973 132 aa9.68□□□□□ -0.86
GPC1-209ENST00000495100 TMEM263Q8WUH6 116 aaKnown RBP9.68□□□□□ -0.86
GPC1-209ENST00000495100 PRO0461Q9UI25 63 aa9.68□□□□□ -0.86
GPC1-209ENST00000495100 FHL3Q13643 280 aa9.67□□□□□ -0.86
GPC1-209ENST00000495100 RNF183Q96D59 192 aa9.67□□□□□ -0.86
GPC1-209ENST00000495100 TRAV4A0A0B4J268 109 aa9.66□□□□□ -0.86
GPC1-209ENST00000495100 CFAP161Q6P656 301 aa9.66□□□□□ -0.86
GPC1-209ENST00000495100 SPANXA1Q9NS26 97 aa9.66□□□□□ -0.86
GPC1-209ENST00000495100 SS18L2Q9UHA2 77 aa9.66□□□□□ -0.86
GPC1-209ENST00000495100 F5H768 121 aa9.66□□□□□ -0.86
GPC1-209ENST00000495100 CRPP02741 224 aa9.66□□□□□ -0.86
GPC1-209ENST00000495100 LINC00242Q5T6M2 205 aa9.66□□□□□ -0.86
GPC1-209ENST00000495100 CR1P17927 2039 aa9.66□□□□□ -0.86
GPC1-209ENST00000495100 PRR3P79522 188 aaKnown RBP9.66□□□□□ -0.86
GPC1-209ENST00000495100 IGLV4-60A0A075B6I1 120 aa9.65□□□□□ -0.86
GPC1-209ENST00000495100 ANGP03950 147 aaKnown RBP9.65□□□□□ -0.86
GPC1-209ENST00000495100 MALP21145 153 aa9.65□□□□□ -0.87
GPC1-209ENST00000495100 HERVK_113P63121 156 aa9.65□□□□□ -0.87
GPC1-209ENST00000495100 MIAQ16674 131 aa9.65□□□□□ -0.87
GPC1-209ENST00000495100 Q8N2B8 174 aa9.65□□□□□ -0.87
GPC1-209ENST00000495100 UBE2D3P61077 147 aa9.64□□□□□ -0.87
GPC1-209ENST00000495100 UBE2D2P62837 147 aa9.64□□□□□ -0.87
GPC1-209ENST00000495100 OTOGQ6ZRI0 2925 aa9.64□□□□□ -0.87
GPC1-209ENST00000495100 NTM-AS1Q6ZSK4 140 aa9.64□□□□□ -0.87
GPC1-209ENST00000495100 Q8N3U1 123 aa9.64□□□□□ -0.87
GPC1-209ENST00000495100 LINC00308Q8TCZ7 52 aa9.63□□□□□ -0.87
GPC1-209ENST00000495100 AMELXQ99217 191 aa9.63□□□□□ -0.87
GPC1-209ENST00000495100 MRPS36P82909 103 aaKnown RBP9.63□□□□□ -0.87
GPC1-209ENST00000495100 SND1-IT1Q9HBX3 110 aa9.63□□□□□ -0.87
GPC1-209ENST00000495100 C11orf72Q8NBR9 251 aa9.62□□□□□ -0.87
GPC1-209ENST00000495100 CRYBA4P53673 196 aa9.62□□□□□ -0.87
GPC1-209ENST00000495100 CDIP1Q9H305 208 aa9.62□□□□□ -0.87
GPC1-209ENST00000495100 BAALC-AS2P0C853 105 aa9.61□□□□□ -0.87
GPC1-209ENST00000495100 ODF3Q96PU9 254 aa9.61□□□□□ -0.87
GPC1-209ENST00000495100 C9orf116Q5BN46 136 aaPredicted RBP9.6□□□□□ -0.87
GPC1-209ENST00000495100 INAFM1C9JVW0 142 aa9.6□□□□□ -0.87
GPC1-209ENST00000495100 H7C423 109 aa9.6□□□□□ -0.87
GPC1-209ENST00000495100 TRBV10-2A0A0K0K1G8 114 aa9.58□□□□□ -0.88
GPC1-209ENST00000495100 FAM222AQ5U5X8 452 aa9.58□□□□□ -0.88
GPC1-209ENST00000495100 LINC00269Q8N2A0 174 aa9.58□□□□□ -0.88
GPC1-209ENST00000495100 COX7B2Q8TF08 81 aa9.58□□□□□ -0.88
GPC1-209ENST00000495100 IGKV3D-7A0A0C4DH55 119 aa9.58□□□□□ -0.88
GPC1-209ENST00000495100 SMIM1B2RUZ4 78 aa9.58□□□□□ -0.88
GPC1-209ENST00000495100 LECT2O14960 151 aa9.58□□□□□ -0.88
GPC1-209ENST00000495100 A0A096LNT2 108 aa9.57□□□□□ -0.88
GPC1-209ENST00000495100 A0A0B4J2C4 111 aa9.57□□□□□ -0.88
GPC1-209ENST00000495100 FAM110AQ9BQ89 295 aa9.57□□□□□ -0.88
GPC1-209ENST00000495100 RPL32P62910 135 aaKnown RBP9.57□□□□□ -0.88
GPC1-209ENST00000495100 SOSTDC1Q6X4U4 206 aa9.57□□□□□ -0.88
GPC1-209ENST00000495100 ATP6V0E2Q8NHE4 81 aa9.57□□□□□ -0.88
GPC1-209ENST00000495100 C14orf132Q9NPU4 83 aa9.57□□□□□ -0.88
GPC1-209ENST00000495100 DAZ2Q13117 558 aaKnown RBP9.56□□□□□ -0.88
GPC1-209ENST00000495100 KLK9Q2XQG4 91 aa9.56□□□□□ -0.88
GPC1-209ENST00000495100 DAZ4Q86SG3 579 aaKnown RBP9.56□□□□□ -0.88
GPC1-209ENST00000495100 DNAJC30Q96LL9 226 aa9.56□□□□□ -0.88
GPC1-209ENST00000495100 SPATA25Q9BR10 227 aa9.56□□□□□ -0.88
GPC1-209ENST00000495100 DAZ3Q9NR90 486 aaKnown RBP9.56□□□□□ -0.88
GPC1-209ENST00000495100 HIST1H4AP62805 103 aaKnown RBP9.56□□□□□ -0.88
GPC1-209ENST00000495100 CDC42SE2Q9NRR3 84 aa9.56□□□□□ -0.88
GPC1-209ENST00000495100 PYGO1Q9Y3Y4 419 aa9.56□□□□□ -0.88
GPC1-209ENST00000495100 DAD1P61803 113 aa9.56□□□□□ -0.88
GPC1-209ENST00000495100 SPATA3Q8NHX4 192 aa9.56□□□□□ -0.88
GPC1-209ENST00000495100 PKD1L1Q8TDX9 2849 aa9.55□□□□□ -0.88
GPC1-209ENST00000495100 A8MTW9 85 aa9.55□□□□□ -0.88
GPC1-209ENST00000495100 NCR3O14931 201 aa9.55□□□□□ -0.88
GPC1-209ENST00000495100 BRI3O95415 125 aa9.54□□□□□ -0.88
GPC1-209ENST00000495100 S100A7L2Q5SY68 101 aa9.54□□□□□ -0.88
GPC1-209ENST00000495100 C16orf74Q96GX8 76 aa9.54□□□□□ -0.88
GPC1-209ENST00000495100 KLK12Q9UKR0 248 aa9.53□□□□□ -0.88
GPC1-209ENST00000495100 J3QKU1 62 aa9.53□□□□□ -0.88
GPC1-209ENST00000495100 PRB2P02812 416 aaPredicted RBP9.53□□□□□ -0.88
GPC1-209ENST00000495100 SS18Q15532 418 aa9.53□□□□□ -0.88
GPC1-209ENST00000495100 FAM104AQ969W3 186 aa9.53□□□□□ -0.88
GPC1-209ENST00000495100 NDUFA1O15239 70 aa9.52□□□□□ -0.88
GPC1-209ENST00000495100 TRBV6-8A0A0A6YYG3 113 aa9.52□□□□□ -0.89
GPC1-209ENST00000495100 IFITM1P13164 125 aa9.52□□□□□ -0.89
GPC1-209ENST00000495100 LITAFQ99732 161 aa9.52□□□□□ -0.89
GPC1-209ENST00000495100 FAM236AA0A1B0GUQ0 79 aa9.52□□□□□ -0.89
GPC1-209ENST00000495100 FAM236BA0A1B0GV22 79 aa9.52□□□□□ -0.89
GPC1-209ENST00000495100 XAGE1AQ9HD64 81 aa9.52□□□□□ -0.89
GPC1-209ENST00000495100 EDA2RQ9HAV5 297 aa9.51□□□□□ -0.89
GPC1-209ENST00000495100 TRBV30A0A0K0K1B3 111 aa9.51□□□□□ -0.89
GPC1-209ENST00000495100 CCDC179H3BU77 68 aa9.51□□□□□ -0.89
GPC1-209ENST00000495100 SCGB1A1P11684 91 aa9.51□□□□□ -0.89
GPC1-209ENST00000495100 TMEM86BQ8N661 226 aa9.51□□□□□ -0.89
GPC1-209ENST00000495100 FAM218AQ96MZ4 157 aa9.5□□□□□ -0.89
GPC1-209ENST00000495100 HIGD2BQ4VC39 106 aa9.49□□□□□ -0.89
GPC1-209ENST00000495100 MRAPQ8TCY5 172 aa9.49□□□□□ -0.89
GPC1-209ENST00000495100 LST1O00453 97 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 111.5 ms