RNA–Protein interactions for RNA: ENST00000493455.6

HPS4-216, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 3

Gene HPS4, Length 986 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-216ENST00000493455 CHTOPQ9Y3Y2 248 aaKnown RBP10.43□□□□□ -0.74
HPS4-216ENST00000493455 DNAH10Q8IVF4 4471 aa10.42□□□□□ -0.74
HPS4-216ENST00000493455 COX7A2LO14548 114 aa10.42□□□□□ -0.74
HPS4-216ENST00000493455 LINC00336Q6ZUF6 198 aa10.42□□□□□ -0.74
HPS4-216ENST00000493455 MAP1LC3CQ9BXW4 147 aa10.42□□□□□ -0.74
HPS4-216ENST00000493455 A0A087WTM6 91 aa10.41□□□□□ -0.74
HPS4-216ENST00000493455 EREGO14944 169 aa10.41□□□□□ -0.74
HPS4-216ENST00000493455 HIGD2BQ4VC39 106 aa10.41□□□□□ -0.74
HPS4-216ENST00000493455 HIST3H2BBQ8N257 126 aa10.41□□□□□ -0.74
HPS4-216ENST00000493455 LINC00469Q8N7U9 141 aa10.41□□□□□ -0.74
HPS4-216ENST00000493455 CHAC1Q9BUX1 264 aa10.41□□□□□ -0.74
HPS4-216ENST00000493455 DNAH2Q9P225 4427 aa10.4□□□□□ -0.74
HPS4-216ENST00000493455 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.4□□□□□ -0.74
HPS4-216ENST00000493455 LRCOL1A6NCL2 159 aa10.4□□□□□ -0.74
HPS4-216ENST00000493455 KRTDAPP60985 99 aa10.4□□□□□ -0.74
HPS4-216ENST00000493455 HERVK_113P63121 156 aa10.4□□□□□ -0.74
HPS4-216ENST00000493455 SEC11AP67812 179 aa10.4□□□□□ -0.74
HPS4-216ENST00000493455 PMCHL2Q9BQD1 86 aa10.4□□□□□ -0.74
HPS4-216ENST00000493455 FUSP35637 526 aaKnown RBP eCLIP10.39□□□□□ -0.75
HPS4-216ENST00000493455 FRAS1Q86XX4 4008 aa10.39□□□□□ -0.75
HPS4-216ENST00000493455 IGLV4-69A0A075B6H9 119 aa10.38□□□□□ -0.75
HPS4-216ENST00000493455 TRAV12-1A0A0B4J245 112 aa10.38□□□□□ -0.75
HPS4-216ENST00000493455 IGHV3OR16-9A0A0B4J2B5 98 aa10.38□□□□□ -0.75
HPS4-216ENST00000493455 TINCRA0A1B0GVN0 87 aa10.38□□□□□ -0.75
HPS4-216ENST00000493455 hDV102S1A0JD36 115 aa10.38□□□□□ -0.75
HPS4-216ENST00000493455 MRPL35Q9NZE8 188 aaKnown RBP10.38□□□□□ -0.75
HPS4-216ENST00000493455 CDKN2A-AS1Q9UH64 79 aa10.38□□□□□ -0.75
HPS4-216ENST00000493455 C11orf86A6NJI1 115 aa10.37□□□□□ -0.75
HPS4-216ENST00000493455 IGLC3P0DOY3 106 aa10.37□□□□□ -0.75
HPS4-216ENST00000493455 CFAP161Q6P656 301 aa10.37□□□□□ -0.75
HPS4-216ENST00000493455 FAM19A3Q7Z5A8 133 aa10.37□□□□□ -0.75
HPS4-216ENST00000493455 C15orf56Q8N910 161 aa10.37□□□□□ -0.75
HPS4-216ENST00000493455 LINC00526Q96FQ7 95 aa10.37□□□□□ -0.75
HPS4-216ENST00000493455 PACRGQ96M98 296 aaPredicted RBP10.37□□□□□ -0.75
HPS4-216ENST00000493455 IGHV1-58A0A0C4DH39 117 aa10.36□□□□□ -0.75
HPS4-216ENST00000493455 F8VRH5 84 aa10.36□□□□□ -0.75
HPS4-216ENST00000493455 SYS1-DBNDD2H3BUS1 97 aa10.36□□□□□ -0.75
HPS4-216ENST00000493455 APOMO95445 188 aa10.36□□□□□ -0.75
HPS4-216ENST00000493455 SPINK8P0C7L1 97 aa10.36□□□□□ -0.75
HPS4-216ENST00000493455 C3orf79P0CE67 100 aa10.36□□□□□ -0.75
HPS4-216ENST00000493455 ODF1Q14990 250 aa10.36□□□□□ -0.75
HPS4-216ENST00000493455 C14orf177Q52M58 125 aa10.36□□□□□ -0.75
HPS4-216ENST00000493455 TMEM170BQ5T4T1 132 aa10.36□□□□□ -0.75
HPS4-216ENST00000493455 Q8N814 137 aa10.36□□□□□ -0.75
HPS4-216ENST00000493455 ORAOV1Q8WV07 137 aa10.36□□□□□ -0.75
HPS4-216ENST00000493455 HIST1H2BLQ99880 126 aa10.36□□□□□ -0.75
HPS4-216ENST00000493455 C5orf52A6NGY3 159 aa10.35□□□□□ -0.75
HPS4-216ENST00000493455 SPATA12Q7Z6I5 190 aa10.35□□□□□ -0.75
HPS4-216ENST00000493455 TOMM7Q9P0U1 55 aa10.35□□□□□ -0.75
HPS4-216ENST00000493455 IGHV3-64A0A075B6Q5 118 aa10.34□□□□□ -0.75
HPS4-216ENST00000493455 A0A087WZ39 114 aa10.34□□□□□ -0.75
HPS4-216ENST00000493455 ZNF22P17026 224 aaPredicted RBP10.34□□□□□ -0.75
HPS4-216ENST00000493455 DNAH17Q9UFH2 4485 aa10.34□□□□□ -0.75
HPS4-216ENST00000493455 H3BRM9 83 aa10.33□□□□□ -0.76
HPS4-216ENST00000493455 ZNF561-AS1K7EIQ3 104 aa10.33□□□□□ -0.76
HPS4-216ENST00000493455 SPAG11BQ08648 103 aa10.33□□□□□ -0.76
HPS4-216ENST00000493455 DPM2O94777 84 aa10.32□□□□□ -0.76
HPS4-216ENST00000493455 KRTAP10-2P60368 255 aa10.32□□□□□ -0.76
HPS4-216ENST00000493455 PET117Q6UWS5 81 aa10.32□□□□□ -0.76
HPS4-216ENST00000493455 IGLV5-45A0A087WSX0 123 aa10.31□□□□□ -0.76
HPS4-216ENST00000493455 GVQW2A0A096LPI5 108 aaPredicted RBP10.31□□□□□ -0.76
HPS4-216ENST00000493455 IGKCP01834 107 aa10.31□□□□□ -0.76
HPS4-216ENST00000493455 PRSS2P07478 247 aa10.31□□□□□ -0.76
HPS4-216ENST00000493455 IGLV5-52A0A0A0MRZ9 124 aa10.3□□□□□ -0.76
HPS4-216ENST00000493455 SMIM1B2RUZ4 78 aa10.3□□□□□ -0.76
HPS4-216ENST00000493455 PLNP26678 52 aa10.3□□□□□ -0.76
HPS4-216ENST00000493455 OR10D4PQ8NGN7 298 aa10.3□□□□□ -0.76
HPS4-216ENST00000493455 A0A1B0GVY2 172 aa10.29□□□□□ -0.76
HPS4-216ENST00000493455 C20orf202A1L168 122 aa10.29□□□□□ -0.76
HPS4-216ENST00000493455 LINC01545Q5VT33 79 aa10.29□□□□□ -0.76
HPS4-216ENST00000493455 CAMK2N2Q96S95 79 aa10.29□□□□□ -0.76
HPS4-216ENST00000493455 LINC01620Q4KN68 170 aa10.28□□□□□ -0.76
HPS4-216ENST00000493455 LINC01561Q8N1V8 128 aa10.28□□□□□ -0.76
HPS4-216ENST00000493455 ATOH7Q8N100 152 aa10.27□□□□□ -0.77
HPS4-216ENST00000493455 COX7B2Q8TF08 81 aa10.27□□□□□ -0.77
HPS4-216ENST00000493455 TMEM223A0PJW6 202 aa10.26□□□□□ -0.77
HPS4-216ENST00000493455 C6orf226Q5I0X4 101 aa10.26□□□□□ -0.77
HPS4-216ENST00000493455 C2orf82Q6UX34 121 aa10.26□□□□□ -0.77
HPS4-216ENST00000493455 NTN5Q8WTR8 489 aaPredicted RBP10.26□□□□□ -0.77
HPS4-216ENST00000493455 FAT2Q9NYQ8 4349 aa10.25□□□□□ -0.77
HPS4-216ENST00000493455 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.25□□□□□ -0.77
HPS4-216ENST00000493455 SLPIP03973 132 aa10.25□□□□□ -0.77
HPS4-216ENST00000493455 CKS1BP61024 79 aa10.25□□□□□ -0.77
HPS4-216ENST00000493455 SYCNQ0VAF6 134 aa10.25□□□□□ -0.77
HPS4-216ENST00000493455 Q8IZM0 81 aa10.25□□□□□ -0.77
HPS4-216ENST00000493455 CARD19Q96LW7 228 aa10.25□□□□□ -0.77
HPS4-216ENST00000493455 PGPEP1Q9NXJ5 209 aa10.25□□□□□ -0.77
HPS4-216ENST00000493455 C16orf90A8MZG2 172 aa10.24□□□□□ -0.77
HPS4-216ENST00000493455 NDUFA1O15239 70 aa10.24□□□□□ -0.77
HPS4-216ENST00000493455 SCGB1D1O95968 90 aa10.24□□□□□ -0.77
HPS4-216ENST00000493455 HERVK_113P61574 105 aa10.24□□□□□ -0.77
HPS4-216ENST00000493455 KIAA0087Q14695 138 aa10.24□□□□□ -0.77
HPS4-216ENST00000493455 Q6ZRU5 148 aa10.24□□□□□ -0.77
HPS4-216ENST00000493455 UNQ6190/PRO20217Q6UXQ8 127 aa10.23□□□□□ -0.77
HPS4-216ENST00000493455 C2orf48Q96LS8 159 aa10.23□□□□□ -0.77
HPS4-216ENST00000493455 CNBPP62633 177 aaKnown RBP10.22□□□□□ -0.77
HPS4-216ENST00000493455 C10orf25Q5T742 122 aa10.22□□□□□ -0.77
HPS4-216ENST00000493455 CDPF1Q6NVV7 123 aa10.22□□□□□ -0.77
HPS4-216ENST00000493455 DNAH11Q96DT5 4516 aa10.21□□□□□ -0.77
HPS4-216ENST00000493455 IGLV5-39A0A0G2JS06 123 aa10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 81.2 ms