RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 KMT2CQ8NEZ4 4911 aaKnown RBP9.25□□□□□ -0.93
C9orf3-221ENST00000489562 DNAH6Q9C0G6 4158 aa9.24□□□□□ -0.93
C9orf3-221ENST00000489562 IGHV3OR16-9A0A0B4J2B5 98 aa9.24□□□□□ -0.93
C9orf3-221ENST00000489562 C3orf79P0CE67 100 aa9.24□□□□□ -0.93
C9orf3-221ENST00000489562 KRTDAPP60985 99 aa9.24□□□□□ -0.93
C9orf3-221ENST00000489562 ODF1Q14990 250 aa9.24□□□□□ -0.93
C9orf3-221ENST00000489562 CHAC1Q9BUX1 264 aa9.24□□□□□ -0.93
C9orf3-221ENST00000489562 IGLV4-69A0A075B6H9 119 aa9.23□□□□□ -0.93
C9orf3-221ENST00000489562 IGLV5-45A0A087WSX0 123 aa9.23□□□□□ -0.93
C9orf3-221ENST00000489562 C20orf202A1L168 122 aa9.23□□□□□ -0.93
C9orf3-221ENST00000489562 COX7A2LO14548 114 aa9.23□□□□□ -0.93
C9orf3-221ENST00000489562 PLNP26678 52 aa9.23□□□□□ -0.93
C9orf3-221ENST00000489562 AKR1D1P51857 326 aa9.23□□□□□ -0.93
C9orf3-221ENST00000489562 LINC01561Q8N1V8 128 aa9.23□□□□□ -0.93
C9orf3-221ENST00000489562 MRPL35Q9NZE8 188 aaKnown RBP9.23□□□□□ -0.93
C9orf3-221ENST00000489562 LINC01545Q5VT33 79 aa9.22□□□□□ -0.93
C9orf3-221ENST00000489562 CFAP161Q6P656 301 aa9.22□□□□□ -0.93
C9orf3-221ENST00000489562 A0A087WZ39 114 aa9.21□□□□□ -0.94
C9orf3-221ENST00000489562 H3BRM9 83 aa9.21□□□□□ -0.94
C9orf3-221ENST00000489562 DPM2O94777 84 aa9.21□□□□□ -0.94
C9orf3-221ENST00000489562 APOMO95445 188 aa9.21□□□□□ -0.94
C9orf3-221ENST00000489562 COX6A2Q02221 97 aa9.21□□□□□ -0.94
C9orf3-221ENST00000489562 LINC00469Q8N7U9 141 aa9.21□□□□□ -0.94
C9orf3-221ENST00000489562 C11orf86A6NJI1 115 aa9.2□□□□□ -0.94
C9orf3-221ENST00000489562 MALP21145 153 aa9.2□□□□□ -0.94
C9orf3-221ENST00000489562 C5orf38Q86SI9 138 aa9.2□□□□□ -0.94
C9orf3-221ENST00000489562 MAPKAPK5-AS1Q8N8E1 139 aa9.2□□□□□ -0.94
C9orf3-221ENST00000489562 CDKN2A-AS1Q9UH64 79 aa9.2□□□□□ -0.94
C9orf3-221ENST00000489562 KMT2AQ03164 3969 aa9.19□□□□□ -0.94
C9orf3-221ENST00000489562 RYR3Q15413 4870 aa9.19□□□□□ -0.94
C9orf3-221ENST00000489562 IGHV1-58A0A0C4DH39 117 aa9.19□□□□□ -0.94
C9orf3-221ENST00000489562 RTL8CO15255 209 aa9.19□□□□□ -0.94
C9orf3-221ENST00000489562 IGKCP01834 107 aa9.19□□□□□ -0.94
C9orf3-221ENST00000489562 ZNF22P17026 224 aaPredicted RBP9.19□□□□□ -0.94
C9orf3-221ENST00000489562 C14orf177Q52M58 125 aa9.19□□□□□ -0.94
C9orf3-221ENST00000489562 LINC00336Q6ZUF6 198 aa9.19□□□□□ -0.94
C9orf3-221ENST00000489562 OR10D4PQ8NGN7 298 aa9.19□□□□□ -0.94
C9orf3-221ENST00000489562 TMEM170BQ5T4T1 132 aa9.18□□□□□ -0.94
C9orf3-221ENST00000489562 SACSQ9NZJ4 4579 aa9.17□□□□□ -0.94
C9orf3-221ENST00000489562 LRCOL1A6NCL2 159 aa9.17□□□□□ -0.94
C9orf3-221ENST00000489562 USP17L23D6RBM5 183 aa9.17□□□□□ -0.94
C9orf3-221ENST00000489562 EREGO14944 169 aa9.17□□□□□ -0.94
C9orf3-221ENST00000489562 PMCHL2Q9BQD1 86 aa9.17□□□□□ -0.94
C9orf3-221ENST00000489562 IGHV3-64A0A075B6Q5 118 aa9.16□□□□□ -0.94
C9orf3-221ENST00000489562 A0A087WTM6 91 aa9.15□□□□□ -0.94
C9orf3-221ENST00000489562 GVQW2A0A096LPI5 108 aaPredicted RBP9.15□□□□□ -0.94
C9orf3-221ENST00000489562 SMIM1B2RUZ4 78 aa9.15□□□□□ -0.94
C9orf3-221ENST00000489562 HERVK_113P61574 105 aa9.15□□□□□ -0.94
C9orf3-221ENST00000489562 C15orf56Q8N910 161 aa9.15□□□□□ -0.94
C9orf3-221ENST00000489562 TMEM223A0PJW6 202 aa9.14□□□□□ -0.95
C9orf3-221ENST00000489562 TNP2Q05952 138 aa9.14□□□□□ -0.95
C9orf3-221ENST00000489562 ORAOV1Q8WV07 137 aa9.14□□□□□ -0.95
C9orf3-221ENST00000489562 F8WDY8 70 aa9.13□□□□□ -0.95
C9orf3-221ENST00000489562 ZNF561-AS1K7EIQ3 104 aa9.13□□□□□ -0.95
C9orf3-221ENST00000489562 LECT2O14960 151 aa9.13□□□□□ -0.95
C9orf3-221ENST00000489562 SCGB1D1O95968 90 aa9.13□□□□□ -0.95
C9orf3-221ENST00000489562 SPINK8P0C7L1 97 aa9.13□□□□□ -0.95
C9orf3-221ENST00000489562 SPAG11BQ08648 103 aa9.13□□□□□ -0.95
C9orf3-221ENST00000489562 WFDC2Q14508 124 aa9.13□□□□□ -0.95
C9orf3-221ENST00000489562 HYDINQ4G0P3 5121 aa9.13□□□□□ -0.95
C9orf3-221ENST00000489562 IGLV5-39A0A0G2JS06 123 aa9.12□□□□□ -0.95
C9orf3-221ENST00000489562 hDV102S1A0JD36 115 aa9.12□□□□□ -0.95
C9orf3-221ENST00000489562 PRSS2P07478 247 aa9.12□□□□□ -0.95
C9orf3-221ENST00000489562 Q8IZM0 81 aa9.12□□□□□ -0.95
C9orf3-221ENST00000489562 Q8N814 137 aa9.12□□□□□ -0.95
C9orf3-221ENST00000489562 JOSD1Q15040 202 aaPredicted RBP9.11□□□□□ -0.95
C9orf3-221ENST00000489562 HIGD2BQ4VC39 106 aa9.11□□□□□ -0.95
C9orf3-221ENST00000489562 C2orf48Q96LS8 159 aa9.11□□□□□ -0.95
C9orf3-221ENST00000489562 CXCL5P42830 114 aa9.1□□□□□ -0.95
C9orf3-221ENST00000489562 COX7B2Q8TF08 81 aa9.1□□□□□ -0.95
C9orf3-221ENST00000489562 NTN5Q8WTR8 489 aaPredicted RBP9.1□□□□□ -0.95
C9orf3-221ENST00000489562 PLEKHB2Q96CS7 222 aa9.1□□□□□ -0.95
C9orf3-221ENST00000489562 TOMM7Q9P0U1 55 aa9.1□□□□□ -0.95
C9orf3-221ENST00000489562 RYR2Q92736 4967 aa9.1□□□□□ -0.95
C9orf3-221ENST00000489562 KIAA0087Q14695 138 aa9.09□□□□□ -0.95
C9orf3-221ENST00000489562 C6orf226Q5I0X4 101 aa9.09□□□□□ -0.95
C9orf3-221ENST00000489562 SFTA2Q6UW10 78 aa9.09□□□□□ -0.95
C9orf3-221ENST00000489562 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.08□□□□□ -0.96
C9orf3-221ENST00000489562 HSBP1L1C9JCN9 74 aa9.08□□□□□ -0.96
C9orf3-221ENST00000489562 E9PLD3 99 aa9.08□□□□□ -0.96
C9orf3-221ENST00000489562 LEPROTO15243 131 aa9.08□□□□□ -0.96
C9orf3-221ENST00000489562 CKS1BP61024 79 aa9.08□□□□□ -0.96
C9orf3-221ENST00000489562 CNBPP62633 177 aaKnown RBP9.08□□□□□ -0.96
C9orf3-221ENST00000489562 ATOH7Q8N100 152 aa9.08□□□□□ -0.96
C9orf3-221ENST00000489562 CAMK2N2Q96S95 79 aa9.08□□□□□ -0.96
C9orf3-221ENST00000489562 NDUFA1O15239 70 aa9.07□□□□□ -0.96
C9orf3-221ENST00000489562 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.06□□□□□ -0.96
C9orf3-221ENST00000489562 SYCNQ0VAF6 134 aa9.06□□□□□ -0.96
C9orf3-221ENST00000489562 CDPF1Q6NVV7 123 aa9.06□□□□□ -0.96
C9orf3-221ENST00000489562 STPG4Q8N801 248 aa9.06□□□□□ -0.96
C9orf3-221ENST00000489562 J3QQQ9 107 aa9.05□□□□□ -0.96
C9orf3-221ENST00000489562 LGALS3P17931 250 aaKnown RBP9.05□□□□□ -0.96
C9orf3-221ENST00000489562 PYY3Q5JQD4 70 aa9.05□□□□□ -0.96
C9orf3-221ENST00000489562 LINC00526Q96FQ7 95 aa9.05□□□□□ -0.96
C9orf3-221ENST00000489562 CARD19Q96LW7 228 aa9.05□□□□□ -0.96
C9orf3-221ENST00000489562 PGPEP1Q9NXJ5 209 aa9.05□□□□□ -0.96
C9orf3-221ENST00000489562 TRBV30A0A0K0K1B3 111 aa9.04□□□□□ -0.96
C9orf3-221ENST00000489562 NMUP48645 174 aa9.04□□□□□ -0.96
C9orf3-221ENST00000489562 RNF151Q2KHN1 245 aa9.04□□□□□ -0.96
C9orf3-221ENST00000489562 PKIGQ9Y2B9 76 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms