RNA–Protein interactions for RNA: ENST00000488279.6

PTPN4-211, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 5

Gene PTPN4, Length 662 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-211ENST00000488279 FAM104AQ969W3 186 aa14.04□□□□□ -0.16
PTPN4-211ENST00000488279 TNXBP22105 4242 aa14.04□□□□□ -0.16
PTPN4-211ENST00000488279 ORMDL3Q8N138 153 aa14.03□□□□□ -0.16
PTPN4-211ENST00000488279 OPRPNQ99935 248 aaPredicted RBP14.03□□□□□ -0.16
PTPN4-211ENST00000488279 A0A1W2PNN7 141 aa14.02□□□□□ -0.17
PTPN4-211ENST00000488279 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP14.02□□□□□ -0.17
PTPN4-211ENST00000488279 RAB5AP20339 215 aa14.02□□□□□ -0.17
PTPN4-211ENST00000488279 RNF151Q2KHN1 245 aa14.02□□□□□ -0.17
PTPN4-211ENST00000488279 REG3GQ6UW15 175 aa14.02□□□□□ -0.17
PTPN4-211ENST00000488279 TMEM136Q6ZRR5 245 aa14.02□□□□□ -0.17
PTPN4-211ENST00000488279 ATP5L2Q7Z4Y8 100 aa14.02□□□□□ -0.17
PTPN4-211ENST00000488279 IGHV3OR16-9A0A0B4J2B5 98 aa14.01□□□□□ -0.17
PTPN4-211ENST00000488279 RPL18AQ02543 176 aaKnown RBP14.01□□□□□ -0.17
PTPN4-211ENST00000488279 SRSF9Q13242 221 aaKnown RBP eCLIP14.01□□□□□ -0.17
PTPN4-211ENST00000488279 IFITM10A6NMD0 228 aa14□□□□□ -0.17
PTPN4-211ENST00000488279 F8WDY8 70 aa14□□□□□ -0.17
PTPN4-211ENST00000488279 ORAOV1Q8WV07 137 aa14□□□□□ -0.17
PTPN4-211ENST00000488279 A0A0J9YXV3 536 aa13.99□□□□□ -0.17
PTPN4-211ENST00000488279 C9orf116Q5BN46 136 aaPredicted RBP13.99□□□□□ -0.17
PTPN4-211ENST00000488279 PRELID3AQ96N28 172 aa13.99□□□□□ -0.17
PTPN4-211ENST00000488279 IFI27P40305 119 aaPredicted RBP13.98□□□□□ -0.17
PTPN4-211ENST00000488279 MRPL35Q9NZE8 188 aaKnown RBP13.98□□□□□ -0.17
PTPN4-211ENST00000488279 IMMP2LQ96T52 175 aa13.97□□□□□ -0.17
PTPN4-211ENST00000488279 NDUFA1O15239 70 aa13.96□□□□□ -0.17
PTPN4-211ENST00000488279 PYGO1Q9Y3Y4 419 aa13.96□□□□□ -0.17
PTPN4-211ENST00000488279 TGIF2-C20orf24A0A0A6YYL0 155 aa13.94□□□□□ -0.18
PTPN4-211ENST00000488279 MT-ND6P03923 174 aa13.94□□□□□ -0.18
PTPN4-211ENST00000488279 LAMTOR2Q9Y2Q5 125 aa13.94□□□□□ -0.18
PTPN4-211ENST00000488279 LOC389332A0A1B0GUA5 103 aa13.93□□□□□ -0.18
PTPN4-211ENST00000488279 PRSS47A8MTI9 375 aa13.93□□□□□ -0.18
PTPN4-211ENST00000488279 KRTAP10-8P60410 259 aa13.93□□□□□ -0.18
PTPN4-211ENST00000488279 PNRC1Q12796 327 aaPredicted RBP13.93□□□□□ -0.18
PTPN4-211ENST00000488279 PSORS1C2Q9UIG4 136 aa13.93□□□□□ -0.18
PTPN4-211ENST00000488279 IGLV4-3A0A075B6K6 122 aa13.92□□□□□ -0.18
PTPN4-211ENST00000488279 MT-ND4LP03901 98 aa13.92□□□□□ -0.18
PTPN4-211ENST00000488279 C10orf25Q5T742 122 aa13.92□□□□□ -0.18
PTPN4-211ENST00000488279 PHF5AQ7RTV0 110 aaKnown RBP13.92□□□□□ -0.18
PTPN4-211ENST00000488279 ANAPC16Q96DE5 110 aa13.92□□□□□ -0.18
PTPN4-211ENST00000488279 MAP1LC3AQ9H492 121 aa13.92□□□□□ -0.18
PTPN4-211ENST00000488279 A0A087WZ39 114 aa13.91□□□□□ -0.18
PTPN4-211ENST00000488279 LINC00242Q5T6M2 205 aa13.91□□□□□ -0.18
PTPN4-211ENST00000488279 UNQ6190/PRO20217Q6UXQ8 127 aa13.91□□□□□ -0.18
PTPN4-211ENST00000488279 TMEM141Q96I45 108 aa13.91□□□□□ -0.18
PTPN4-211ENST00000488279 TLX1NBP0CAT3 122 aa13.9□□□□□ -0.18
PTPN4-211ENST00000488279 RAB14P61106 215 aa13.9□□□□□ -0.18
PTPN4-211ENST00000488279 C1orf137Q5JT78 98 aa13.89□□□□□ -0.19
PTPN4-211ENST00000488279 TEX43Q6ZNM6 134 aa13.89□□□□□ -0.19
PTPN4-211ENST00000488279 C6orf48Q9UBA6 75 aa13.89□□□□□ -0.19
PTPN4-211ENST00000488279 ODF1Q14990 250 aa13.88□□□□□ -0.19
PTPN4-211ENST00000488279 Q8N8P6 123 aa13.88□□□□□ -0.19
PTPN4-211ENST00000488279 KIAA0087Q14695 138 aa13.87□□□□□ -0.19
PTPN4-211ENST00000488279 C2orf88Q9BSF0 95 aa13.87□□□□□ -0.19
PTPN4-211ENST00000488279 CYSLTR1Q9Y271 337 aa13.87□□□□□ -0.19
PTPN4-211ENST00000488279 GAGE2EQ4V326 116 aa13.86□□□□□ -0.19
PTPN4-211ENST00000488279 Q6ZN92 141 aa13.86□□□□□ -0.19
PTPN4-211ENST00000488279 GAGE2DQ9UEU5 116 aa13.86□□□□□ -0.19
PTPN4-211ENST00000488279 LRP2P98164 4655 aa13.85□□□□□ -0.19
PTPN4-211ENST00000488279 FAM168BA1KXE4 195 aa13.85□□□□□ -0.19
PTPN4-211ENST00000488279 UBE2D1P51668 147 aa13.85□□□□□ -0.19
PTPN4-211ENST00000488279 C2orf66Q6UXQ4 117 aa13.85□□□□□ -0.19
PTPN4-211ENST00000488279 VCX2Q9H322 139 aa13.85□□□□□ -0.19
PTPN4-211ENST00000488279 ORMDL2Q53FV1 153 aa13.84□□□□□ -0.19
PTPN4-211ENST00000488279 LINC01561Q8N1V8 128 aa13.84□□□□□ -0.19
PTPN4-211ENST00000488279 TRBV30A0A0K0K1B3 111 aa13.83□□□□□ -0.2
PTPN4-211ENST00000488279 K7EMI3 77 aa13.83□□□□□ -0.2
PTPN4-211ENST00000488279 C2orf82Q6UX34 121 aa13.82□□□□□ -0.2
PTPN4-211ENST00000488279 FAM19A5Q7Z5A7 132 aaPredicted RBP13.82□□□□□ -0.2
PTPN4-211ENST00000488279 PACRGQ96M98 296 aaPredicted RBP13.82□□□□□ -0.2
PTPN4-211ENST00000488279 AMELXQ99217 191 aa13.82□□□□□ -0.2
PTPN4-211ENST00000488279 CTDSP1Q9GZU7 261 aa13.82□□□□□ -0.2
PTPN4-211ENST00000488279 NPSP0C0P6 89 aa13.81□□□□□ -0.2
PTPN4-211ENST00000488279 ZC2HC1BQ5TFG8 222 aa13.81□□□□□ -0.2
PTPN4-211ENST00000488279 IGLV7-43P04211 117 aa13.8□□□□□ -0.2
PTPN4-211ENST00000488279 NXT2Q9NPJ8 142 aaKnown RBP13.8□□□□□ -0.2
PTPN4-211ENST00000488279 IGIPA6NJ69 53 aa13.79□□□□□ -0.2
PTPN4-211ENST00000488279 NDUFC2-KCTD14E9PQ53 114 aa13.79□□□□□ -0.2
PTPN4-211ENST00000488279 LINC00173Q6ZV60 143 aa13.79□□□□□ -0.2
PTPN4-211ENST00000488279 DIRC1Q969H9 104 aa13.79□□□□□ -0.2
PTPN4-211ENST00000488279 PRSS2P07478 247 aa13.78□□□□□ -0.2
PTPN4-211ENST00000488279 G0S2P27469 103 aa13.78□□□□□ -0.2
PTPN4-211ENST00000488279 PAPPA-AS1Q5QFB9 102 aa13.77□□□□□ -0.21
PTPN4-211ENST00000488279 KRTAP11-1Q8IUC1 163 aa13.77□□□□□ -0.21
PTPN4-211ENST00000488279 CKS1BP61024 79 aa13.76□□□□□ -0.21
PTPN4-211ENST00000488279 C6orf226Q5I0X4 101 aa13.76□□□□□ -0.21
PTPN4-211ENST00000488279 KRTAP7-1Q8IUC3 87 aa13.76□□□□□ -0.21
PTPN4-211ENST00000488279 TOMM7Q9P0U1 55 aa13.76□□□□□ -0.21
PTPN4-211ENST00000488279 M0QXV9 152 aa13.75□□□□□ -0.21
PTPN4-211ENST00000488279 SEC11AP67812 179 aa13.75□□□□□ -0.21
PTPN4-211ENST00000488279 CLLU1Q5K131 121 aa13.75□□□□□ -0.21
PTPN4-211ENST00000488279 FAM19A3Q7Z5A8 133 aa13.75□□□□□ -0.21
PTPN4-211ENST00000488279 UBE2BP63146 152 aa13.74□□□□□ -0.21
PTPN4-211ENST00000488279 HERVK_113P63121 156 aa13.73□□□□□ -0.21
PTPN4-211ENST00000488279 C9orf129Q5T035 196 aaKnown RBP13.73□□□□□ -0.21
PTPN4-211ENST00000488279 ALKBH7Q9BT30 221 aaPredicted RBP13.73□□□□□ -0.21
PTPN4-211ENST00000488279 H0Y9J4 135 aa13.72□□□□□ -0.21
PTPN4-211ENST00000488279 Q8IZM0 81 aa13.72□□□□□ -0.21
PTPN4-211ENST00000488279 TIMM17AQ99595 171 aa13.72□□□□□ -0.21
PTPN4-211ENST00000488279 KIAA1644Q3SXP7 199 aa13.71□□□□□ -0.21
PTPN4-211ENST00000488279 TOMM6Q96B49 74 aa13.71□□□□□ -0.21
PTPN4-211ENST00000488279 GEMIN7Q9H840 131 aaKnown RBP13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms