RNA–Protein interactions for RNA: ENST00000461874.1

VARS-220, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 845 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-220ENST00000461874 IGHV3OR16-9A0A0B4J2B5 98 aa11.8□□□□□ -0.52
VARS-220ENST00000461874 RAB5AP20339 215 aa11.8□□□□□ -0.52
VARS-220ENST00000461874 SPAG11BQ08648 103 aa11.8□□□□□ -0.52
VARS-220ENST00000461874 OR10D4PQ8NGN7 298 aa11.8□□□□□ -0.52
VARS-220ENST00000461874 PLA2G2DQ9UNK4 145 aa11.8□□□□□ -0.52
VARS-220ENST00000461874 IFITM10A6NMD0 228 aa11.79□□□□□ -0.52
VARS-220ENST00000461874 PRSS47A8MTI9 375 aa11.79□□□□□ -0.52
VARS-220ENST00000461874 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.79□□□□□ -0.52
VARS-220ENST00000461874 MT-ND4LP03901 98 aa11.79□□□□□ -0.52
VARS-220ENST00000461874 RAB14P61106 215 aa11.79□□□□□ -0.52
VARS-220ENST00000461874 RNF151Q2KHN1 245 aa11.78□□□□□ -0.52
VARS-220ENST00000461874 ANAPC16Q96DE5 110 aa11.78□□□□□ -0.52
VARS-220ENST00000461874 LAMTOR2Q9Y2Q5 125 aa11.78□□□□□ -0.52
VARS-220ENST00000461874 PYGO1Q9Y3Y4 419 aa11.78□□□□□ -0.52
VARS-220ENST00000461874 TNXBP22105 4242 aa11.78□□□□□ -0.52
VARS-220ENST00000461874 A0A1W2PNN7 141 aa11.77□□□□□ -0.53
VARS-220ENST00000461874 IFI27P40305 119 aaPredicted RBP11.77□□□□□ -0.53
VARS-220ENST00000461874 ORAOV1Q8WV07 137 aa11.77□□□□□ -0.53
VARS-220ENST00000461874 A0A0J9YXV3 536 aa11.76□□□□□ -0.53
VARS-220ENST00000461874 F8WDY8 70 aa11.76□□□□□ -0.53
VARS-220ENST00000461874 Q6ZRP5 223 aa11.76□□□□□ -0.53
VARS-220ENST00000461874 LOC389332A0A1B0GUA5 103 aa11.75□□□□□ -0.53
VARS-220ENST00000461874 RPL18AQ02543 176 aaKnown RBP11.75□□□□□ -0.53
VARS-220ENST00000461874 SPINK6Q6UWN8 80 aa11.75□□□□□ -0.53
VARS-220ENST00000461874 LINC01600Q96MT4 127 aa11.75□□□□□ -0.53
VARS-220ENST00000461874 MAP1LC3AQ9H492 121 aa11.75□□□□□ -0.53
VARS-220ENST00000461874 MRPL35Q9NZE8 188 aaKnown RBP11.75□□□□□ -0.53
VARS-220ENST00000461874 IGLV4-3A0A075B6K6 122 aa11.74□□□□□ -0.53
VARS-220ENST00000461874 C9orf116Q5BN46 136 aaPredicted RBP11.74□□□□□ -0.53
VARS-220ENST00000461874 TGIF2-C20orf24A0A0A6YYL0 155 aa11.73□□□□□ -0.53
VARS-220ENST00000461874 NDUFA1O15239 70 aa11.73□□□□□ -0.53
VARS-220ENST00000461874 SRSF9Q13242 221 aaKnown RBP eCLIP11.73□□□□□ -0.53
VARS-220ENST00000461874 Q8N8P6 123 aa11.73□□□□□ -0.53
VARS-220ENST00000461874 TMEM141Q96I45 108 aa11.73□□□□□ -0.53
VARS-220ENST00000461874 A0A087WZ39 114 aa11.72□□□□□ -0.53
VARS-220ENST00000461874 LINC00242Q5T6M2 205 aa11.72□□□□□ -0.53
VARS-220ENST00000461874 C10orf25Q5T742 122 aa11.72□□□□□ -0.53
VARS-220ENST00000461874 CLLU1Q5K131 121 aa11.71□□□□□ -0.53
VARS-220ENST00000461874 IMMP2LQ96T52 175 aa11.71□□□□□ -0.53
VARS-220ENST00000461874 C2orf66Q6UXQ4 117 aa11.7□□□□□ -0.54
VARS-220ENST00000461874 UNQ6190/PRO20217Q6UXQ8 127 aa11.7□□□□□ -0.54
VARS-220ENST00000461874 CYSLTR1Q9Y271 337 aa11.7□□□□□ -0.54
VARS-220ENST00000461874 TLX1NBP0CAT3 122 aa11.69□□□□□ -0.54
VARS-220ENST00000461874 KIAA0087Q14695 138 aa11.69□□□□□ -0.54
VARS-220ENST00000461874 REG3GQ6UW15 175 aa11.69□□□□□ -0.54
VARS-220ENST00000461874 TEX43Q6ZNM6 134 aa11.69□□□□□ -0.54
VARS-220ENST00000461874 C6orf48Q9UBA6 75 aa11.69□□□□□ -0.54
VARS-220ENST00000461874 UBE2D1P51668 147 aa11.68□□□□□ -0.54
VARS-220ENST00000461874 ORMDL2Q53FV1 153 aa11.68□□□□□ -0.54
VARS-220ENST00000461874 UBR4Q5T4S7 5183 aa11.67□□□□□ -0.54
VARS-220ENST00000461874 K7EMI3 77 aa11.67□□□□□ -0.54
VARS-220ENST00000461874 PHF5AQ7RTV0 110 aaKnown RBP11.67□□□□□ -0.54
VARS-220ENST00000461874 AMELXQ99217 191 aa11.67□□□□□ -0.54
VARS-220ENST00000461874 C2orf88Q9BSF0 95 aa11.67□□□□□ -0.54
VARS-220ENST00000461874 CTDSP1Q9GZU7 261 aa11.67□□□□□ -0.54
VARS-220ENST00000461874 PSORS1C2Q9UIG4 136 aa11.67□□□□□ -0.54
VARS-220ENST00000461874 ZC2HC1BQ5TFG8 222 aa11.66□□□□□ -0.54
VARS-220ENST00000461874 Q6ZN92 141 aa11.66□□□□□ -0.54
VARS-220ENST00000461874 LINC00173Q6ZV60 143 aa11.66□□□□□ -0.54
VARS-220ENST00000461874 LINC01561Q8N1V8 128 aa11.66□□□□□ -0.54
VARS-220ENST00000461874 VCX2Q9H322 139 aa11.66□□□□□ -0.54
VARS-220ENST00000461874 IGIPA6NJ69 53 aa11.65□□□□□ -0.54
VARS-220ENST00000461874 MT-ND6P03923 174 aa11.65□□□□□ -0.54
VARS-220ENST00000461874 NPSP0C0P6 89 aa11.65□□□□□ -0.54
VARS-220ENST00000461874 ADCYAP1P18509 176 aa11.65□□□□□ -0.54
VARS-220ENST00000461874 KRTAP10-8P60410 259 aa11.65□□□□□ -0.54
VARS-220ENST00000461874 NXT2Q9NPJ8 142 aaKnown RBP11.65□□□□□ -0.54
VARS-220ENST00000461874 FAM168BA1KXE4 195 aa11.64□□□□□ -0.55
VARS-220ENST00000461874 UQCC3Q6UW78 93 aa11.64□□□□□ -0.55
VARS-220ENST00000461874 TRBV30A0A0K0K1B3 111 aa11.63□□□□□ -0.55
VARS-220ENST00000461874 TMEM218A2RU14 115 aa11.63□□□□□ -0.55
VARS-220ENST00000461874 GAGE2EQ4V326 116 aa11.63□□□□□ -0.55
VARS-220ENST00000461874 C2orf82Q6UX34 121 aa11.63□□□□□ -0.55
VARS-220ENST00000461874 GAGE2DQ9UEU5 116 aa11.63□□□□□ -0.55
VARS-220ENST00000461874 C1orf137Q5JT78 98 aa11.62□□□□□ -0.55
VARS-220ENST00000461874 TRAV9-1A0A075B6T8 112 aa11.61□□□□□ -0.55
VARS-220ENST00000461874 IFITM2Q01629 132 aa11.61□□□□□ -0.55
VARS-220ENST00000461874 KIAA1644Q3SXP7 199 aa11.61□□□□□ -0.55
VARS-220ENST00000461874 FAM19A3Q7Z5A8 133 aa11.61□□□□□ -0.55
VARS-220ENST00000461874 G0S2P27469 103 aa11.6□□□□□ -0.55
VARS-220ENST00000461874 ODF1Q14990 250 aa11.6□□□□□ -0.55
VARS-220ENST00000461874 FAM19A5Q7Z5A7 132 aaPredicted RBP11.6□□□□□ -0.55
VARS-220ENST00000461874 PACRGQ96M98 296 aaPredicted RBP11.6□□□□□ -0.55
VARS-220ENST00000461874 NDUFC2-KCTD14E9PQ53 114 aa11.59□□□□□ -0.55
VARS-220ENST00000461874 PAPPA-AS1Q5QFB9 102 aa11.59□□□□□ -0.55
VARS-220ENST00000461874 KRTAP7-1Q8IUC3 87 aa11.59□□□□□ -0.55
VARS-220ENST00000461874 TOMM6Q96B49 74 aa11.59□□□□□ -0.55
VARS-220ENST00000461874 TIMM17AQ99595 171 aa11.59□□□□□ -0.55
VARS-220ENST00000461874 KRTAP11-1Q8IUC1 163 aa11.58□□□□□ -0.56
VARS-220ENST00000461874 IGLV7-43P04211 117 aa11.57□□□□□ -0.56
VARS-220ENST00000461874 PRSS2P07478 247 aa11.57□□□□□ -0.56
VARS-220ENST00000461874 SEC11AP67812 179 aa11.57□□□□□ -0.56
VARS-220ENST00000461874 SEC11CQ9BY50 192 aa11.57□□□□□ -0.56
VARS-220ENST00000461874 HERVK_113P63121 156 aa11.56□□□□□ -0.56
VARS-220ENST00000461874 C6orf226Q5I0X4 101 aa11.56□□□□□ -0.56
VARS-220ENST00000461874 Q8IZM0 81 aa11.56□□□□□ -0.56
VARS-220ENST00000461874 TOMM7Q9P0U1 55 aa11.56□□□□□ -0.56
VARS-220ENST00000461874 CDKN2A-AS1Q9UH64 79 aa11.56□□□□□ -0.56
VARS-220ENST00000461874 CKS1BP61024 79 aa11.55□□□□□ -0.56
VARS-220ENST00000461874 C9orf129Q5T035 196 aaKnown RBP11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms