RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 LINC00694P0DN24 101 aa10.21□□□□□ -0.78
LIG1-202ENST00000427526 LINC00242Q5T6M2 205 aa10.21□□□□□ -0.78
LIG1-202ENST00000427526 DGAT2L7PQ6IED9 249 aa10.21□□□□□ -0.78
LIG1-202ENST00000427526 TMEM126AQ9H061 195 aa10.21□□□□□ -0.78
LIG1-202ENST00000427526 TRGV1A0A0A0MS02 117 aa10.2□□□□□ -0.78
LIG1-202ENST00000427526 TRBV10-2A0A0K0K1G8 114 aa10.2□□□□□ -0.78
LIG1-202ENST00000427526 TMEM262E9PQX1 116 aa10.2□□□□□ -0.78
LIG1-202ENST00000427526 NTM-AS1Q6ZSK4 140 aa10.2□□□□□ -0.78
LIG1-202ENST00000427526 C3orf56Q8N813 242 aa10.2□□□□□ -0.78
LIG1-202ENST00000427526 SETXQ7Z333 2677 aaKnown RBP10.2□□□□□ -0.78
LIG1-202ENST00000427526 TRBV10-1A0A0K0K1A3 114 aa10.19□□□□□ -0.78
LIG1-202ENST00000427526 CRLF1O75462 422 aa10.19□□□□□ -0.78
LIG1-202ENST00000427526 HERVK_113P63121 156 aa10.19□□□□□ -0.78
LIG1-202ENST00000427526 NTN5Q8WTR8 489 aaPredicted RBP10.19□□□□□ -0.78
LIG1-202ENST00000427526 RPL13AP40429 203 aaKnown RBP10.19□□□□□ -0.78
LIG1-202ENST00000427526 DAND5Q8N907 189 aa10.19□□□□□ -0.78
LIG1-202ENST00000427526 SNCGO76070 127 aa10.18□□□□□ -0.78
LIG1-202ENST00000427526 Q6ZTI0 123 aa10.18□□□□□ -0.78
LIG1-202ENST00000427526 K7EQD1 137 aa10.18□□□□□ -0.78
LIG1-202ENST00000427526 NDUFA7O95182 113 aa10.17□□□□□ -0.78
LIG1-202ENST00000427526 RPL36AP83881 106 aaKnown RBP10.17□□□□□ -0.78
LIG1-202ENST00000427526 DAZ2Q13117 558 aaKnown RBP10.17□□□□□ -0.78
LIG1-202ENST00000427526 DAZ4Q86SG3 579 aaKnown RBP10.17□□□□□ -0.78
LIG1-202ENST00000427526 RPL36ALQ969Q0 106 aaKnown RBP10.17□□□□□ -0.78
LIG1-202ENST00000427526 DAZ3Q9NR90 486 aaKnown RBP10.17□□□□□ -0.78
LIG1-202ENST00000427526 H7C423 109 aa10.17□□□□□ -0.78
LIG1-202ENST00000427526 LOC107984640A0A0U1RRK4 108 aa10.17□□□□□ -0.78
LIG1-202ENST00000427526 COX6CP09669 75 aa10.17□□□□□ -0.78
LIG1-202ENST00000427526 Q6Q795 121 aa10.17□□□□□ -0.78
LIG1-202ENST00000427526 TEX49A0A1B0GTD5 131 aa10.16□□□□□ -0.78
LIG1-202ENST00000427526 SMIM1B2RUZ4 78 aa10.16□□□□□ -0.78
LIG1-202ENST00000427526 INAFM1C9JVW0 142 aa10.16□□□□□ -0.78
LIG1-202ENST00000427526 Q9H8V8 135 aa10.16□□□□□ -0.78
LIG1-202ENST00000427526 KRTAP10-3P60369 221 aa10.16□□□□□ -0.78
LIG1-202ENST00000427526 CIRBPQ14011 172 aaKnown RBP10.16□□□□□ -0.78
LIG1-202ENST00000427526 GIG44P09565 113 aaPredicted RBP10.15□□□□□ -0.78
LIG1-202ENST00000427526 LINC00308Q8TCZ7 52 aa10.15□□□□□ -0.78
LIG1-202ENST00000427526 CDC42SE2Q9NRR3 84 aa10.15□□□□□ -0.78
LIG1-202ENST00000427526 LST1O00453 97 aa10.15□□□□□ -0.78
LIG1-202ENST00000427526 CLEC2BQ92478 149 aa10.15□□□□□ -0.78
LIG1-202ENST00000427526 F5H768 121 aa10.14□□□□□ -0.79
LIG1-202ENST00000427526 TRAV13-1A0A0B4J241 112 aa10.14□□□□□ -0.79
LIG1-202ENST00000427526 C2orf82Q6UX34 121 aa10.14□□□□□ -0.79
LIG1-202ENST00000427526 PLAC8L1A1L4L8 177 aa10.13□□□□□ -0.79
LIG1-202ENST00000427526 H3BT86 120 aa10.13□□□□□ -0.79
LIG1-202ENST00000427526 ZNF625Q96I27 306 aaPredicted RBP10.13□□□□□ -0.79
LIG1-202ENST00000427526 NOP10Q9NPE3 64 aaKnown RBP10.13□□□□□ -0.79
LIG1-202ENST00000427526 JMJD1CQ15652 2540 aa10.12□□□□□ -0.79
LIG1-202ENST00000427526 SOSTDC1Q6X4U4 206 aa10.12□□□□□ -0.79
LIG1-202ENST00000427526 FAM19A5Q7Z5A7 132 aaPredicted RBP10.12□□□□□ -0.79
LIG1-202ENST00000427526 UBE2WQ96B02 151 aa10.12□□□□□ -0.79
LIG1-202ENST00000427526 WFDC10AQ9H1F0 79 aa10.12□□□□□ -0.79
LIG1-202ENST00000427526 FN1P02751 2386 aaKnown RBP10.12□□□□□ -0.79
LIG1-202ENST00000427526 HIVEP1P15822 2718 aa10.11□□□□□ -0.79
LIG1-202ENST00000427526 IGLV1-51P01701 117 aa10.1□□□□□ -0.79
LIG1-202ENST00000427526 A0A0U1RRA0 63 aa10.09□□□□□ -0.79
LIG1-202ENST00000427526 CMC4P56277 68 aaPredicted RBP10.09□□□□□ -0.79
LIG1-202ENST00000427526 MRPL23Q16540 153 aaKnown RBP10.09□□□□□ -0.79
LIG1-202ENST00000427526 C16orf74Q96GX8 76 aa10.09□□□□□ -0.79
LIG1-202ENST00000427526 C19orf73Q9NVV2 129 aa10.09□□□□□ -0.79
LIG1-202ENST00000427526 C2CD3Q4AC94 2353 aa10.09□□□□□ -0.79
LIG1-202ENST00000427526 NOTCH3Q9UM47 2321 aa10.09□□□□□ -0.79
LIG1-202ENST00000427526 PRIMA1Q86XR5 153 aa10.09□□□□□ -0.79
LIG1-202ENST00000427526 NSD1Q96L73 2696 aaPredicted RBP10.09□□□□□ -0.79
LIG1-202ENST00000427526 TRAV8-4A0A0B4J246 113 aa10.09□□□□□ -0.79
LIG1-202ENST00000427526 DEFB121Q5J5C9 76 aa10.09□□□□□ -0.79
LIG1-202ENST00000427526 TMEM243Q9BU79 118 aa10.09□□□□□ -0.79
LIG1-202ENST00000427526 CSNK1G2-AS1Q8NCQ2 148 aa10.08□□□□□ -0.8
LIG1-202ENST00000427526 COPS9Q8WXC6 57 aa10.08□□□□□ -0.8
LIG1-202ENST00000427526 OVOL2Q9BRP0 275 aa10.08□□□□□ -0.8
LIG1-202ENST00000427526 LOC100131303A0A0U1RQF7 123 aa10.07□□□□□ -0.8
LIG1-202ENST00000427526 TRBV6-4A0A1B0GX49 114 aa10.07□□□□□ -0.8
LIG1-202ENST00000427526 CHCHD5Q9BSY4 110 aa10.07□□□□□ -0.8
LIG1-202ENST00000427526 UBE2L6O14933 153 aa10.07□□□□□ -0.8
LIG1-202ENST00000427526 TRGV2A0A075B6R0 118 aa10.06□□□□□ -0.8
LIG1-202ENST00000427526 COX7A2LO14548 114 aa10.06□□□□□ -0.8
LIG1-202ENST00000427526 RPL35AP18077 110 aaKnown RBP10.06□□□□□ -0.8
LIG1-202ENST00000427526 C15orf53Q8NAA6 179 aa10.06□□□□□ -0.8
LIG1-202ENST00000427526 J3KT08 172 aa10.05□□□□□ -0.8
LIG1-202ENST00000427526 PF4P02776 101 aa10.05□□□□□ -0.8
LIG1-202ENST00000427526 SPATA3Q8NHX4 192 aa10.04□□□□□ -0.8
LIG1-202ENST00000427526 FAM240AA0A1B0GVK7 77 aa10.04□□□□□ -0.8
LIG1-202ENST00000427526 LINC00482Q8N8I6 264 aa10.04□□□□□ -0.8
LIG1-202ENST00000427526 FHL2Q14192 279 aa10.03□□□□□ -0.8
LIG1-202ENST00000427526 OR13C6PQ8NH95 151 aa10.02□□□□□ -0.8
LIG1-202ENST00000427526 VWFP04275 2813 aa10.02□□□□□ -0.81
LIG1-202ENST00000427526 TRGV4A0A0C4DH28 118 aa10.02□□□□□ -0.81
LIG1-202ENST00000427526 IGLV4-60A0A075B6I1 120 aa10.01□□□□□ -0.81
LIG1-202ENST00000427526 COX7B2Q8TF08 81 aa10.01□□□□□ -0.81
LIG1-202ENST00000427526 TENM1Q9UKZ4 2725 aa10.01□□□□□ -0.81
LIG1-202ENST00000427526 TRBV6-8A0A0A6YYG3 113 aa10.01□□□□□ -0.81
LIG1-202ENST00000427526 A0A1B0GX51 115 aa10.01□□□□□ -0.81
LIG1-202ENST00000427526 IGHV3OR16-9A0A0B4J2B5 98 aa10□□□□□ -0.81
LIG1-202ENST00000427526 KLK5Q9Y337 293 aaPredicted RBP10□□□□□ -0.81
LIG1-202ENST00000427526 FLNBO75369 2602 aaKnown RBP10□□□□□ -0.81
LIG1-202ENST00000427526 TRACP01848 142 aa9.99□□□□□ -0.81
LIG1-202ENST00000427526 C9orf153Q5TBE3 101 aa9.99□□□□□ -0.81
LIG1-202ENST00000427526 FAM218AQ96MZ4 157 aa9.99□□□□□ -0.81
LIG1-202ENST00000427526 MIR7-3HGQ8N6C7 128 aa9.98□□□□□ -0.81
LIG1-202ENST00000427526 IGKV2-28A0A075B6P5 120 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms