RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 NPYP01303 97 aa7.08□□□□□ -1.28
USP4-204ENST00000416417 TIMM21Q9BVV7 248 aa7.08□□□□□ -1.28
USP4-204ENST00000416417 NAT8Q9UHE5 227 aa7.08□□□□□ -1.28
USP4-204ENST00000416417 SMAGPQ0VAQ4 97 aa7.07□□□□□ -1.28
USP4-204ENST00000416417 UNQ6190/PRO20217Q6UXQ8 127 aa7.07□□□□□ -1.28
USP4-204ENST00000416417 TMEM18Q96B42 140 aa7.07□□□□□ -1.28
USP4-204ENST00000416417 C20orf78Q9BR46 151 aa7.07□□□□□ -1.28
USP4-204ENST00000416417 SMIM2Q9BVW6 85 aa7.07□□□□□ -1.28
USP4-204ENST00000416417 TRBV24-1A0A075B6N3 115 aa7.06□□□□□ -1.28
USP4-204ENST00000416417 IFITM10A6NMD0 228 aa7.06□□□□□ -1.28
USP4-204ENST00000416417 IGHV3OR16-9A0A0B4J2B5 98 aa7.06□□□□□ -1.28
USP4-204ENST00000416417 LINC00862A6NCI5 91 aa7.06□□□□□ -1.28
USP4-204ENST00000416417 FAM19A5Q7Z5A7 132 aaPredicted RBP7.06□□□□□ -1.28
USP4-204ENST00000416417 OR10D4PQ8NGN7 298 aa7.06□□□□□ -1.28
USP4-204ENST00000416417 RPL32P62910 135 aaKnown RBP7.05□□□□□ -1.28
USP4-204ENST00000416417 GAGE2EQ4V326 116 aa7.05□□□□□ -1.28
USP4-204ENST00000416417 PRR26Q8N8Z3 221 aa7.05□□□□□ -1.28
USP4-204ENST00000416417 C6orf48Q9UBA6 75 aa7.05□□□□□ -1.28
USP4-204ENST00000416417 GAGE2DQ9UEU5 116 aa7.05□□□□□ -1.28
USP4-204ENST00000416417 A0A087WZ39 114 aa7.04□□□□□ -1.28
USP4-204ENST00000416417 A0A1B0GXF2 115 aa7.04□□□□□ -1.28
USP4-204ENST00000416417 NDUFA1O15239 70 aa7.04□□□□□ -1.28
USP4-204ENST00000416417 HBBP68871 147 aa7.04□□□□□ -1.28
USP4-204ENST00000416417 RNF151Q2KHN1 245 aa7.04□□□□□ -1.28
USP4-204ENST00000416417 ZC2HC1BQ5TFG8 222 aa7.04□□□□□ -1.28
USP4-204ENST00000416417 KRTAP7-1Q8IUC3 87 aa7.04□□□□□ -1.28
USP4-204ENST00000416417 SPANXA1Q9NS26 97 aa7.04□□□□□ -1.28
USP4-204ENST00000416417 MRPL35Q9NZE8 188 aaKnown RBP7.04□□□□□ -1.28
USP4-204ENST00000416417 LPAP08519 4548 aa7.03□□□□□ -1.28
USP4-204ENST00000416417 A0A1B0GW15 77 aa7.03□□□□□ -1.28
USP4-204ENST00000416417 IGLV7-43P04211 117 aa7.03□□□□□ -1.28
USP4-204ENST00000416417 MRPS36P82909 103 aaKnown RBP7.03□□□□□ -1.28
USP4-204ENST00000416417 PEA15Q15121 130 aa7.03□□□□□ -1.28
USP4-204ENST00000416417 C2orf82Q6UX34 121 aa7.03□□□□□ -1.28
USP4-204ENST00000416417 LOC389332A0A1B0GUA5 103 aa7.02□□□□□ -1.29
USP4-204ENST00000416417 F8W036 122 aa7.02□□□□□ -1.29
USP4-204ENST00000416417 KIAA0087Q14695 138 aa7.02□□□□□ -1.29
USP4-204ENST00000416417 IGLV4-3A0A075B6K6 122 aa7.01□□□□□ -1.29
USP4-204ENST00000416417 LINC00242Q5T6M2 205 aa7.01□□□□□ -1.29
USP4-204ENST00000416417 TMEM136Q6ZRR5 245 aa7.01□□□□□ -1.29
USP4-204ENST00000416417 PRELID3AQ96N28 172 aa7.01□□□□□ -1.29
USP4-204ENST00000416417 IMMP2LQ96T52 175 aa7.01□□□□□ -1.29
USP4-204ENST00000416417 TGIF2-C20orf24A0A0A6YYL0 155 aa7.01□□□□□ -1.29
USP4-204ENST00000416417 RAB5AP20339 215 aa7.01□□□□□ -1.29
USP4-204ENST00000416417 SMDT1Q9H4I9 107 aa7.01□□□□□ -1.29
USP4-204ENST00000416417 S100A8P05109 93 aa7□□□□□ -1.29
USP4-204ENST00000416417 TLX1NBP0CAT3 122 aa7□□□□□ -1.29
USP4-204ENST00000416417 IFI27P40305 119 aaPredicted RBP7□□□□□ -1.29
USP4-204ENST00000416417 ORMDL3Q8N138 153 aa7□□□□□ -1.29
USP4-204ENST00000416417 DIRC1Q969H9 104 aa7□□□□□ -1.29
USP4-204ENST00000416417 H0Y9J4 135 aa6.99□□□□□ -1.29
USP4-204ENST00000416417 M0QXV9 152 aa6.99□□□□□ -1.29
USP4-204ENST00000416417 PPBPP02775 128 aa6.99□□□□□ -1.29
USP4-204ENST00000416417 C9orf129Q5T035 196 aaKnown RBP6.99□□□□□ -1.29
USP4-204ENST00000416417 F8WDY8 70 aa6.98□□□□□ -1.29
USP4-204ENST00000416417 UBE2BP63146 152 aa6.98□□□□□ -1.29
USP4-204ENST00000416417 LINC00469Q8N7U9 141 aa6.98□□□□□ -1.29
USP4-204ENST00000416417 TMEM141Q96I45 108 aa6.98□□□□□ -1.29
USP4-204ENST00000416417 UBE2D1P51668 147 aa6.97□□□□□ -1.29
USP4-204ENST00000416417 LINC00173Q6ZV60 143 aa6.97□□□□□ -1.29
USP4-204ENST00000416417 TOMM7Q9P0U1 55 aa6.97□□□□□ -1.29
USP4-204ENST00000416417 PYGO1Q9Y3Y4 419 aa6.97□□□□□ -1.29
USP4-204ENST00000416417 KRTAP1-4P0C5Y4 121 aa6.96□□□□□ -1.29
USP4-204ENST00000416417 TEX43Q6ZNM6 134 aa6.96□□□□□ -1.29
USP4-204ENST00000416417 C2orf66Q6UXQ4 117 aa6.96□□□□□ -1.3
USP4-204ENST00000416417 ATP5L2Q7Z4Y8 100 aa6.96□□□□□ -1.3
USP4-204ENST00000416417 PACRGQ96M98 296 aaPredicted RBP6.96□□□□□ -1.3
USP4-204ENST00000416417 MAP1LC3AQ9H492 121 aa6.96□□□□□ -1.3
USP4-204ENST00000416417 TRBV30A0A0K0K1B3 111 aa6.95□□□□□ -1.3
USP4-204ENST00000416417 NDUFC2-KCTD14E9PQ53 114 aa6.95□□□□□ -1.3
USP4-204ENST00000416417 Q8N8P6 123 aa6.94□□□□□ -1.3
USP4-204ENST00000416417 XAGE1AQ9HD64 81 aa6.94□□□□□ -1.3
USP4-204ENST00000416417 CYSLTR1Q9Y271 337 aa6.94□□□□□ -1.3
USP4-204ENST00000416417 PRSS47A8MTI9 375 aa6.93□□□□□ -1.3
USP4-204ENST00000416417 ATP6V1G1O75348 118 aa6.93□□□□□ -1.3
USP4-204ENST00000416417 PRSS2P07478 247 aa6.93□□□□□ -1.3
USP4-204ENST00000416417 AMELXQ99217 191 aa6.93□□□□□ -1.3
USP4-204ENST00000416417 C2orf88Q9BSF0 95 aa6.93□□□□□ -1.3
USP4-204ENST00000416417 VCX2Q9H322 139 aa6.93□□□□□ -1.3
USP4-204ENST00000416417 Q6ZN92 141 aa6.92□□□□□ -1.3
USP4-204ENST00000416417 IGLV1-50A0A075B6I6 118 aa6.91□□□□□ -1.3
USP4-204ENST00000416417 IGIPA6NJ69 53 aa6.91□□□□□ -1.3
USP4-204ENST00000416417 CKS1BP61024 79 aa6.91□□□□□ -1.3
USP4-204ENST00000416417 PRR4Q16378 134 aa6.91□□□□□ -1.3
USP4-204ENST00000416417 C6orf226Q5I0X4 101 aa6.91□□□□□ -1.3
USP4-204ENST00000416417 ALKBH7Q9BT30 221 aaPredicted RBP6.91□□□□□ -1.3
USP4-204ENST00000416417 CDKN2A-AS1Q9UH64 79 aa6.91□□□□□ -1.3
USP4-204ENST00000416417 C22orf24Q9Y442 160 aa6.91□□□□□ -1.3
USP4-204ENST00000416417 KIAA1644Q3SXP7 199 aa6.91□□□□□ -1.3
USP4-204ENST00000416417 LINC01561Q8N1V8 128 aa6.91□□□□□ -1.3
USP4-204ENST00000416417 LAMTOR2Q9Y2Q5 125 aa6.91□□□□□ -1.3
USP4-204ENST00000416417 MT-ND4LP03901 98 aa6.9□□□□□ -1.31
USP4-204ENST00000416417 ORMDL2Q53FV1 153 aa6.9□□□□□ -1.31
USP4-204ENST00000416417 TSPAN13O95857 204 aa6.89□□□□□ -1.31
USP4-204ENST00000416417 Q8IZM0 81 aa6.89□□□□□ -1.31
USP4-204ENST00000416417 CTDSP1Q9GZU7 261 aa6.89□□□□□ -1.31
USP4-204ENST00000416417 ZNF861PO60384 105 aa6.88□□□□□ -1.31
USP4-204ENST00000416417 ANAPC16Q96DE5 110 aa6.88□□□□□ -1.31
USP4-204ENST00000416417 ADCYAP1P18509 176 aa6.87□□□□□ -1.31
USP4-204ENST00000416417 PNRC1Q12796 327 aaPredicted RBP6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms