RNA–Protein interactions for RNA: ENST00000410457.1

RNU2-28P-201, Transcript of RNA, U2 small nuclear 28, pseudogene, humanhuman

BASIC

Gene RNU2-28P, Length 189 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU2-28P-201ENST00000410457 HSD52Q0P140 79 aa0.14□□□□□ -2.39
RNU2-28P-201ENST00000410457 TMEM263Q8WUH6 116 aaKnown RBP0.14□□□□□ -2.39
RNU2-28P-201ENST00000410457 MANBALQ9NQG1 85 aa0.14□□□□□ -2.39
RNU2-28P-201ENST00000410457 SYNE2Q8WXH0 6885 aaKnown RBP0.14□□□□□ -2.39
RNU2-28P-201ENST00000410457 SPHKAPQ2M3C7 1700 aa0.13□□□□□ -2.39
RNU2-28P-201ENST00000410457 CHD6Q8TD26 2715 aa0.13□□□□□ -2.39
RNU2-28P-201ENST00000410457 COX6CP09669 75 aa0.13□□□□□ -2.39
RNU2-28P-201ENST00000410457 S100PP25815 95 aa0.13□□□□□ -2.39
RNU2-28P-201ENST00000410457 Q5VSD8 79 aa0.13□□□□□ -2.39
RNU2-28P-201ENST00000410457 FAM223AQ8IWN6 122 aa0.13□□□□□ -2.39
RNU2-28P-201ENST00000410457 PRO1854Q9UHT4 67 aa0.13□□□□□ -2.39
RNU2-28P-201ENST00000410457 ARL2-SNX15V9GYD0 113 aa0.13□□□□□ -2.39
RNU2-28P-201ENST00000410457 EHBP1L1Q8N3D4 1523 aa0.13□□□□□ -2.39
RNU2-28P-201ENST00000410457 FSIP2Q5CZC0 6907 aa0.12□□□□□ -2.39
RNU2-28P-201ENST00000410457 KDM5AP29375 1690 aaKnown RBP0.12□□□□□ -2.39
RNU2-28P-201ENST00000410457 PEG3Q9GZU2 1588 aa0.12□□□□□ -2.39
RNU2-28P-201ENST00000410457 TMEM262E9PQX1 116 aa0.12□□□□□ -2.39
RNU2-28P-201ENST00000410457 PIEZO2Q9H5I5 2752 aa0.12□□□□□ -2.39
RNU2-28P-201ENST00000410457 BTAF1O14981 1849 aa0.12□□□□□ -2.39
RNU2-28P-201ENST00000410457 ANKRD17O75179 2603 aaKnown RBP0.12□□□□□ -2.39
RNU2-28P-201ENST00000410457 NSD3Q9BZ95 1437 aa0.12□□□□□ -2.39
RNU2-28P-201ENST00000410457 DIP2CQ9Y2E4 1556 aa0.11□□□□□ -2.39
RNU2-28P-201ENST00000410457 KRTDAPP60985 99 aa0.11□□□□□ -2.39
RNU2-28P-201ENST00000410457 PIGYQ3MUY2 71 aa0.11□□□□□ -2.39
RNU2-28P-201ENST00000410457 CACNA1AO00555 2505 aa0.1□□□□□ -2.39
RNU2-28P-201ENST00000410457 TRBV6-1A0A0K0K1D8 114 aa0.1□□□□□ -2.39
RNU2-28P-201ENST00000410457 SNCAP37840 140 aa0.1□□□□□ -2.39
RNU2-28P-201ENST00000410457 PAPPAQ13219 1627 aa0.09□□□□□ -2.39
RNU2-28P-201ENST00000410457 TRAPPC2P0DI81 140 aa0.09□□□□□ -2.4
RNU2-28P-201ENST00000410457 TRAPPC2BP0DI82 140 aa0.09□□□□□ -2.4
RNU2-28P-201ENST00000410457 DEFB109BQ30KR1 87 aa0.09□□□□□ -2.4
RNU2-28P-201ENST00000410457 MRC2Q9UBG0 1479 aa0.09□□□□□ -2.4
RNU2-28P-201ENST00000410457 ZFYVE16Q7Z3T8 1539 aa0.08□□□□□ -2.4
RNU2-28P-201ENST00000410457 VWFP04275 2813 aa0.08□□□□□ -2.4
RNU2-28P-201ENST00000410457 CRYM-AS1A6NIL9 109 aa0.08□□□□□ -2.4
RNU2-28P-201ENST00000410457 UBA52P62987 128 aaKnown RBP0.08□□□□□ -2.4
RNU2-28P-201ENST00000410457 C10orf113Q5VZT2 155 aa0.08□□□□□ -2.4
RNU2-28P-201ENST00000410457 C12orf57Q99622 126 aa0.08□□□□□ -2.4
RNU2-28P-201ENST00000410457 CGREF1Q99674 301 aa0.08□□□□□ -2.4
RNU2-28P-201ENST00000410457 PPRC1Q5VV67 1664 aaKnown RBP0.08□□□□□ -2.4
RNU2-28P-201ENST00000410457 ZFHX3Q15911 3703 aa0.08□□□□□ -2.4
RNU2-28P-201ENST00000410457 URB1O60287 2271 aaKnown RBP0.07□□□□□ -2.4
RNU2-28P-201ENST00000410457 C10orf142B7Z368 130 aa0.07□□□□□ -2.4
RNU2-28P-201ENST00000410457 TCEAL7Q9BRU2 100 aa0.07□□□□□ -2.4
RNU2-28P-201ENST00000410457 SPTA1P02549 2419 aa0.07□□□□□ -2.4
RNU2-28P-201ENST00000410457 CC2D2AQ9P2K1 1620 aa0.06□□□□□ -2.4
RNU2-28P-201ENST00000410457 FLNCQ14315 2725 aa0.06□□□□□ -2.4
RNU2-28P-201ENST00000410457 ADGRL2O95490 1459 aa0.06□□□□□ -2.4
RNU2-28P-201ENST00000410457 MAGI1Q96QZ7 1491 aaPredicted RBP0.06□□□□□ -2.4
RNU2-28P-201ENST00000410457 SAA2P0DJI9 122 aaPredicted RBP0.06□□□□□ -2.4
RNU2-28P-201ENST00000410457 SPRR1AP35321 89 aa0.06□□□□□ -2.4
RNU2-28P-201ENST00000410457 DEFB123Q8N688 67 aa0.06□□□□□ -2.4
RNU2-28P-201ENST00000410457 C14orf144Q96I85 54 aa0.06□□□□□ -2.4
RNU2-28P-201ENST00000410457 ARHGEF12Q9NZN5 1544 aa0.06□□□□□ -2.4
RNU2-28P-201ENST00000410457 POLA1P09884 1462 aaPredicted RBP0.05□□□□□ -2.4
RNU2-28P-201ENST00000410457 A0A1B0GWA3 101 aa0.05□□□□□ -2.4
RNU2-28P-201ENST00000410457 SFTA2Q6UW10 78 aa0.05□□□□□ -2.4
RNU2-28P-201ENST00000410457 NSD1Q96L73 2696 aaPredicted RBP0.05□□□□□ -2.4
RNU2-28P-201ENST00000410457 ABCC5O15440 1437 aa0.04□□□□□ -2.4
RNU2-28P-201ENST00000410457 TULP4Q9NRJ4 1543 aa0.04□□□□□ -2.4
RNU2-28P-201ENST00000410457 PKD1L1Q8TDX9 2849 aa0.04□□□□□ -2.4
RNU2-28P-201ENST00000410457 FXYD6-FXYD2A0A087WZ82 144 aa0.04□□□□□ -2.4
RNU2-28P-201ENST00000410457 hADV29S1A0JD25 119 aa0.04□□□□□ -2.4
RNU2-28P-201ENST00000410457 TMEM218A2RU14 115 aa0.04□□□□□ -2.4
RNU2-28P-201ENST00000410457 FAM223BA6NKX1 122 aa0.04□□□□□ -2.4
RNU2-28P-201ENST00000410457 SEC11AP67812 179 aa0.04□□□□□ -2.4
RNU2-28P-201ENST00000410457 PRO1933Q9H354 126 aa0.04□□□□□ -2.4
RNU2-28P-201ENST00000410457 TOP2BQ02880 1626 aa0.04□□□□□ -2.4
RNU2-28P-201ENST00000410457 TENM4Q6N022 2769 aa0.04□□□□□ -2.4
RNU2-28P-201ENST00000410457 CSPG4Q6UVK1 2322 aa0.03□□□□□ -2.4
RNU2-28P-201ENST00000410457 SCN7AQ01118 1682 aa0.03□□□□□ -2.4
RNU2-28P-201ENST00000410457 TOPAZ1Q8N9V7 1692 aa0.03□□□□□ -2.4
RNU2-28P-201ENST00000410457 LINC00846Q9NV44 126 aa0.03□□□□□ -2.4
RNU2-28P-201ENST00000410457 CHD1O14646 1710 aa0.03□□□□□ -2.4
RNU2-28P-201ENST00000410457 ABCA3Q99758 1704 aa0.02□□□□□ -2.41
RNU2-28P-201ENST00000410457 TRBV7-4A0A0J9YYF1 115 aa0.02□□□□□ -2.41
RNU2-28P-201ENST00000410457 LINC01600Q96MT4 127 aa0.02□□□□□ -2.41
RNU2-28P-201ENST00000410457 SSPOA2VEC9 5147 aa0.02□□□□□ -2.41
RNU2-28P-201ENST00000410457 COL4A6Q14031 1691 aa0.02□□□□□ -2.41
RNU2-28P-201ENST00000410457 TRAV30A0A087WSZ9 112 aa0.01□□□□□ -2.41
RNU2-28P-201ENST00000410457 NDUFC1O43677 76 aa0.01□□□□□ -2.41
RNU2-28P-201ENST00000410457 COX6B1P14854 86 aa0.01□□□□□ -2.41
RNU2-28P-201ENST00000410457 SPRR2GQ9BYE4 73 aa0.01□□□□□ -2.41
RNU2-28P-201ENST00000410457 ATRQ13535 2644 aa0.01□□□□□ -2.41
RNU2-28P-201ENST00000410457 C1orf167Q5SNV9 1468 aa0.01□□□□□ -2.41
RNU2-28P-201ENST00000410457 LINC00959A0A1B0GUT2 108 aa0□□□□□ -2.41
RNU2-28P-201ENST00000410457 GAPVD1Q14C86 1478 aa0□□□□□ -2.41
RNU2-28P-201ENST00000410457 FDCSPQ8NFU4 85 aa0□□□□□ -2.41
RNU2-28P-201ENST00000410457 MACF1Q9UPN3 7388 aaKnown RBP-0.01□□□□□ -2.41
RNU2-28P-201ENST00000410457 PDCD11Q14690 1871 aaKnown RBP-0.01□□□□□ -2.41
RNU2-28P-201ENST00000410457 RBP2P50120 134 aa-0.01□□□□□ -2.41
RNU2-28P-201ENST00000410457 NUP188Q5SRE5 1749 aa-0.01□□□□□ -2.41
RNU2-28P-201ENST00000410457 MAP1BP46821 2468 aaKnown RBP-0.02□□□□□ -2.41
RNU2-28P-201ENST00000410457 DNAJC13O75165 2243 aa-0.02□□□□□ -2.41
RNU2-28P-201ENST00000410457 ATP6V1G2-DDX39BF2Z307 99 aa-0.02□□□□□ -2.41
RNU2-28P-201ENST00000410457 GNGT2O14610 69 aa-0.02□□□□□ -2.41
RNU2-28P-201ENST00000410457 PRDM15P57071 1507 aaPredicted RBP-0.03□□□□□ -2.41
RNU2-28P-201ENST00000410457 FLNAP21333 2647 aaKnown RBP-0.03□□□□□ -2.41
RNU2-28P-201ENST00000410457 CHD8Q9HCK8 2581 aa-0.03□□□□□ -2.41
RNU2-28P-201ENST00000410457 SPRR1BP22528 89 aa-0.03□□□□□ -2.41
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms