RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 VSIG2Q96IQ7 327 aa7.85□□□□□ -1.15
TCOF1-203ENST00000394269 IGLV4-60A0A075B6I1 120 aa7.85□□□□□ -1.15
TCOF1-203ENST00000394269 IGHV4-28A0A0C4DH34 117 aa7.85□□□□□ -1.15
TCOF1-203ENST00000394269 F5H768 121 aa7.85□□□□□ -1.15
TCOF1-203ENST00000394269 IGHV4-30-4P0DP06 118 aa7.85□□□□□ -1.15
TCOF1-203ENST00000394269 PAX4O43316 350 aa7.84□□□□□ -1.15
TCOF1-203ENST00000394269 IGHV3-30P01768 117 aa7.84□□□□□ -1.15
TCOF1-203ENST00000394269 IGHV3-30-5P0DP03 117 aa7.84□□□□□ -1.15
TCOF1-203ENST00000394269 APOC4P55056 127 aa7.84□□□□□ -1.15
TCOF1-203ENST00000394269 DAD1P61803 113 aa7.84□□□□□ -1.15
TCOF1-203ENST00000394269 CDC42SE2Q9NRR3 84 aa7.84□□□□□ -1.15
TCOF1-203ENST00000394269 ADAMTSL4-AS1Q5T5F5 129 aa7.84□□□□□ -1.16
TCOF1-203ENST00000394269 ATP6V0E2Q8NHE4 81 aa7.84□□□□□ -1.16
TCOF1-203ENST00000394269 C11orf68Q9H3H3 251 aaKnown RBP7.84□□□□□ -1.16
TCOF1-203ENST00000394269 TRBV6-8A0A0A6YYG3 113 aa7.83□□□□□ -1.16
TCOF1-203ENST00000394269 PSMB2P49721 201 aa7.83□□□□□ -1.16
TCOF1-203ENST00000394269 Q9H8V8 135 aa7.83□□□□□ -1.16
TCOF1-203ENST00000394269 TMEM238C9JI98 176 aa7.83□□□□□ -1.16
TCOF1-203ENST00000394269 CFC1BP0CG36 223 aa7.83□□□□□ -1.16
TCOF1-203ENST00000394269 CFC1P0CG37 223 aa7.83□□□□□ -1.16
TCOF1-203ENST00000394269 HERVK_113P63121 156 aa7.82□□□□□ -1.16
TCOF1-203ENST00000394269 MEIG1Q5JSS6 88 aa7.82□□□□□ -1.16
TCOF1-203ENST00000394269 C5orf38Q86SI9 138 aa7.82□□□□□ -1.16
TCOF1-203ENST00000394269 CELA1Q9UNI1 258 aa7.82□□□□□ -1.16
TCOF1-203ENST00000394269 RETNQ9HD89 108 aa7.82□□□□□ -1.16
TCOF1-203ENST00000394269 TRAV26-1A0A087WT03 109 aa7.82□□□□□ -1.16
TCOF1-203ENST00000394269 CRYBA4P53673 196 aa7.82□□□□□ -1.16
TCOF1-203ENST00000394269 PRO0255Q9UI72 69 aa7.81□□□□□ -1.16
TCOF1-203ENST00000394269 G3V4G9 280 aa7.81□□□□□ -1.16
TCOF1-203ENST00000394269 TSPAN13O95857 204 aa7.81□□□□□ -1.16
TCOF1-203ENST00000394269 XCL1P47992 114 aa7.81□□□□□ -1.16
TCOF1-203ENST00000394269 KIR2DL5BQ8NHK3 375 aa7.8□□□□□ -1.16
TCOF1-203ENST00000394269 IGLV10-54A0A075B6I4 117 aa7.8□□□□□ -1.16
TCOF1-203ENST00000394269 WFDC2Q14508 124 aa7.8□□□□□ -1.16
TCOF1-203ENST00000394269 Q8N3U1 123 aa7.8□□□□□ -1.16
TCOF1-203ENST00000394269 PRO1854Q9UHT4 67 aa7.8□□□□□ -1.16
TCOF1-203ENST00000394269 EIF4EBP3O60516 100 aaPredicted RBP7.79□□□□□ -1.16
TCOF1-203ENST00000394269 TIRAPP58753 221 aa7.79□□□□□ -1.16
TCOF1-203ENST00000394269 SMAGPQ0VAQ4 97 aa7.79□□□□□ -1.16
TCOF1-203ENST00000394269 SBSPONQ8IVN8 264 aa7.79□□□□□ -1.16
TCOF1-203ENST00000394269 SMIM9A6NGZ8 99 aa7.79□□□□□ -1.16
TCOF1-203ENST00000394269 GTSF1LQ9H1H1 148 aa7.79□□□□□ -1.16
TCOF1-203ENST00000394269 SH2D6Q7Z4S9 175 aa7.78□□□□□ -1.16
TCOF1-203ENST00000394269 WFDC9Q8NEX5 89 aa7.78□□□□□ -1.16
TCOF1-203ENST00000394269 SPANXB1Q9NS25 103 aaPredicted RBP7.78□□□□□ -1.16
TCOF1-203ENST00000394269 TEX48A0A1B0GUV7 120 aa7.78□□□□□ -1.16
TCOF1-203ENST00000394269 SMIM1B2RUZ4 78 aa7.78□□□□□ -1.16
TCOF1-203ENST00000394269 CIRBPQ14011 172 aaKnown RBP7.78□□□□□ -1.16
TCOF1-203ENST00000394269 ETDBQ3ZM63 59 aa7.78□□□□□ -1.16
TCOF1-203ENST00000394269 ERG28Q9UKR5 140 aa7.78□□□□□ -1.16
TCOF1-203ENST00000394269 TENM3Q9P273 2699 aa7.77□□□□□ -1.17
TCOF1-203ENST00000394269 ZFAND6Q6FIF0 208 aa7.77□□□□□ -1.17
TCOF1-203ENST00000394269 ATP5G1P05496 136 aa7.77□□□□□ -1.17
TCOF1-203ENST00000394269 SPART-AS1P0CW21 52 aa7.77□□□□□ -1.17
TCOF1-203ENST00000394269 KRTAP10-11P60412 298 aa7.77□□□□□ -1.17
TCOF1-203ENST00000394269 CSDC2Q9Y534 153 aaKnown RBP7.77□□□□□ -1.17
TCOF1-203ENST00000394269 LYRM9A8MSI8 78 aa7.77□□□□□ -1.17
TCOF1-203ENST00000394269 K7ERU9 68 aa7.77□□□□□ -1.17
TCOF1-203ENST00000394269 A0A1B0GWB2 263 aa7.76□□□□□ -1.17
TCOF1-203ENST00000394269 ANGP03950 147 aaKnown RBP7.76□□□□□ -1.17
TCOF1-203ENST00000394269 PFN2P35080 140 aa7.76□□□□□ -1.17
TCOF1-203ENST00000394269 LINC00269Q8N2A0 174 aa7.75□□□□□ -1.17
TCOF1-203ENST00000394269 Q8NAQ8 132 aa7.75□□□□□ -1.17
TCOF1-203ENST00000394269 LITAFQ99732 161 aa7.75□□□□□ -1.17
TCOF1-203ENST00000394269 MIFP14174 115 aa7.74□□□□□ -1.17
TCOF1-203ENST00000394269 LINC00158P58513 81 aa7.74□□□□□ -1.17
TCOF1-203ENST00000394269 MIAQ16674 131 aa7.74□□□□□ -1.17
TCOF1-203ENST00000394269 RNF183Q96D59 192 aa7.74□□□□□ -1.17
TCOF1-203ENST00000394269 STAB2Q8WWQ8 2551 aa7.74□□□□□ -1.17
TCOF1-203ENST00000394269 IGLV5-45A0A087WSX0 123 aa7.74□□□□□ -1.17
TCOF1-203ENST00000394269 NDUFA1O15239 70 aa7.74□□□□□ -1.17
TCOF1-203ENST00000394269 TCL1BO95988 128 aa7.74□□□□□ -1.17
TCOF1-203ENST00000394269 C6orf226Q5I0X4 101 aa7.74□□□□□ -1.17
TCOF1-203ENST00000394269 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.73□□□□□ -1.17
TCOF1-203ENST00000394269 LINC00959A0A1B0GUT2 108 aa7.73□□□□□ -1.17
TCOF1-203ENST00000394269 IGHV3-33P01772 117 aa7.73□□□□□ -1.17
TCOF1-203ENST00000394269 PRO0461Q9UI25 63 aa7.73□□□□□ -1.17
TCOF1-203ENST00000394269 SHISA2Q6UWI4 295 aa7.72□□□□□ -1.17
TCOF1-203ENST00000394269 LINC00612Q8N6U2 182 aa7.72□□□□□ -1.17
TCOF1-203ENST00000394269 COX7B2Q8TF08 81 aa7.72□□□□□ -1.17
TCOF1-203ENST00000394269 IGLV5-39A0A0G2JS06 123 aa7.72□□□□□ -1.17
TCOF1-203ENST00000394269 SS18Q15532 418 aa7.72□□□□□ -1.17
TCOF1-203ENST00000394269 TENM2Q9NT68 2774 aa7.72□□□□□ -1.17
TCOF1-203ENST00000394269 H7C423 109 aa7.71□□□□□ -1.18
TCOF1-203ENST00000394269 C2orf82Q6UX34 121 aa7.71□□□□□ -1.18
TCOF1-203ENST00000394269 F8W1H4 67 aa7.71□□□□□ -1.18
TCOF1-203ENST00000394269 RPL13AP40429 203 aaKnown RBP7.71□□□□□ -1.18
TCOF1-203ENST00000394269 LINC00308Q8TCZ7 52 aa7.71□□□□□ -1.18
TCOF1-203ENST00000394269 IGHV3OR16-9A0A0B4J2B5 98 aa7.7□□□□□ -1.18
TCOF1-203ENST00000394269 SMCPP49901 116 aaPredicted RBP7.7□□□□□ -1.18
TCOF1-203ENST00000394269 MRPL23Q16540 153 aaKnown RBP7.7□□□□□ -1.18
TCOF1-203ENST00000394269 LINC00526Q96FQ7 95 aa7.7□□□□□ -1.18
TCOF1-203ENST00000394269 ANK2Q01484 3957 aa7.7□□□□□ -1.18
TCOF1-203ENST00000394269 MIR7-3HGQ8N6C7 128 aa7.7□□□□□ -1.18
TCOF1-203ENST00000394269 KLK12Q9UKR0 248 aa7.7□□□□□ -1.18
TCOF1-203ENST00000394269 C9JAW5 83 aa7.69□□□□□ -1.18
TCOF1-203ENST00000394269 MALP21145 153 aa7.69□□□□□ -1.18
TCOF1-203ENST00000394269 LYRM7Q5U5X0 104 aa7.69□□□□□ -1.18
TCOF1-203ENST00000394269 Q6ZTC4 211 aa7.69□□□□□ -1.18
TCOF1-203ENST00000394269 TRIAP1O43715 76 aa7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 88.4 ms