RNA–Protein interactions for RNA: ENST00000391814.5

SHANK1-204, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHANK1, Length 6,622 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-204ENST00000391814 DEFB131BA0A096LNP1 70 aa11.8□□□□□ -0.52
SHANK1-204ENST00000391814 RPL28P46779 137 aaKnown RBP11.8□□□□□ -0.52
SHANK1-204ENST00000391814 TRBV7-7A0A0K0K1E9 115 aa11.8□□□□□ -0.52
SHANK1-204ENST00000391814 NBASA2RRP1 2371 aa11.79□□□□□ -0.52
SHANK1-204ENST00000391814 PRR3P79522 188 aaKnown RBP11.79□□□□□ -0.52
SHANK1-204ENST00000391814 Q8N3U1 123 aa11.79□□□□□ -0.52
SHANK1-204ENST00000391814 KLLNB2CW77 178 aa11.78□□□□□ -0.52
SHANK1-204ENST00000391814 PCNX3Q9H6A9 2034 aa11.78□□□□□ -0.52
SHANK1-204ENST00000391814 Q6ZVQ6 151 aa11.78□□□□□ -0.52
SHANK1-204ENST00000391814 CDC42SE2Q9NRR3 84 aa11.78□□□□□ -0.52
SHANK1-204ENST00000391814 SYCNQ0VAF6 134 aa11.78□□□□□ -0.52
SHANK1-204ENST00000391814 IGF2-ASQ6U949 168 aa11.77□□□□□ -0.52
SHANK1-204ENST00000391814 SPTAN1Q13813 2472 aaKnown RBP11.76□□□□□ -0.53
SHANK1-204ENST00000391814 SPINK1P00995 79 aa11.76□□□□□ -0.53
SHANK1-204ENST00000391814 HCFC1P51610 2035 aa11.76□□□□□ -0.53
SHANK1-204ENST00000391814 NCOA6Q14686 2063 aaPredicted RBP11.75□□□□□ -0.53
SHANK1-204ENST00000391814 C9orf116Q5BN46 136 aaPredicted RBP11.75□□□□□ -0.53
SHANK1-204ENST00000391814 LINC00242Q5T6M2 205 aa11.75□□□□□ -0.53
SHANK1-204ENST00000391814 TNFRSF13BO14836 293 aaPredicted RBP11.75□□□□□ -0.53
SHANK1-204ENST00000391814 LINC00846Q9NV44 126 aa11.75□□□□□ -0.53
SHANK1-204ENST00000391814 Q8IZM0 81 aa11.75□□□□□ -0.53
SHANK1-204ENST00000391814 CHCHD7Q9BUK0 85 aa11.75□□□□□ -0.53
SHANK1-204ENST00000391814 SMIM1B2RUZ4 78 aa11.75□□□□□ -0.53
SHANK1-204ENST00000391814 ESRGQ1W209 222 aa11.74□□□□□ -0.53
SHANK1-204ENST00000391814 C7orf33Q8WU49 177 aa11.74□□□□□ -0.53
SHANK1-204ENST00000391814 PSMG3-AS1Q96PY0 264 aa11.74□□□□□ -0.53
SHANK1-204ENST00000391814 LMO4P61968 165 aa11.74□□□□□ -0.53
SHANK1-204ENST00000391814 CRYGAP11844 174 aa11.73□□□□□ -0.53
SHANK1-204ENST00000391814 Q6YL49 198 aa11.73□□□□□ -0.53
SHANK1-204ENST00000391814 PCOTHQ58A44 107 aa11.72□□□□□ -0.53
SHANK1-204ENST00000391814 C18orf65Q6ZTR6 163 aa11.72□□□□□ -0.53
SHANK1-204ENST00000391814 INAFM1C9JVW0 142 aa11.72□□□□□ -0.53
SHANK1-204ENST00000391814 EDN2P20800 178 aa11.72□□□□□ -0.53
SHANK1-204ENST00000391814 DAZAP2Q15038 168 aaPredicted RBP11.72□□□□□ -0.53
SHANK1-204ENST00000391814 TMEM254Q8TBM7 123 aa11.71□□□□□ -0.53
SHANK1-204ENST00000391814 PRORYQ9H606 182 aa11.71□□□□□ -0.53
SHANK1-204ENST00000391814 PLA2G1BP04054 148 aaKnown RBP11.7□□□□□ -0.54
SHANK1-204ENST00000391814 COL5A1P20908 1838 aaPredicted RBP11.69□□□□□ -0.54
SHANK1-204ENST00000391814 LINC00575Q6W349 94 aa11.69□□□□□ -0.54
SHANK1-204ENST00000391814 TRBV10-3A0A0K0K1G6 114 aa11.69□□□□□ -0.54
SHANK1-204ENST00000391814 CYSRT1A8MQ03 144 aa11.69□□□□□ -0.54
SHANK1-204ENST00000391814 SMCPP49901 116 aaPredicted RBP11.69□□□□□ -0.54
SHANK1-204ENST00000391814 LINC01547P58512 204 aaPredicted RBP11.69□□□□□ -0.54
SHANK1-204ENST00000391814 ZGRF1Q86YA3 2104 aa11.69□□□□□ -0.54
SHANK1-204ENST00000391814 PLAC8L1A1L4L8 177 aa11.68□□□□□ -0.54
SHANK1-204ENST00000391814 TNCP24821 2201 aa11.68□□□□□ -0.54
SHANK1-204ENST00000391814 H0Y9P7 68 aa11.68□□□□□ -0.54
SHANK1-204ENST00000391814 C1orf137Q5JT78 98 aa11.68□□□□□ -0.54
SHANK1-204ENST00000391814 IL17DQ8TAD2 202 aa11.68□□□□□ -0.54
SHANK1-204ENST00000391814 MALRD1Q5VYJ5 2156 aa11.68□□□□□ -0.54
SHANK1-204ENST00000391814 Q8N6K4 173 aa11.67□□□□□ -0.54
SHANK1-204ENST00000391814 Q9UF83 564 aa11.67□□□□□ -0.54
SHANK1-204ENST00000391814 C10orf25Q5T742 122 aa11.67□□□□□ -0.54
SHANK1-204ENST00000391814 PLA2G2AP14555 144 aa11.66□□□□□ -0.54
SHANK1-204ENST00000391814 DEFB116Q30KQ4 102 aa11.66□□□□□ -0.54
SHANK1-204ENST00000391814 UNQ6190/PRO20217Q6UXQ8 127 aa11.66□□□□□ -0.54
SHANK1-204ENST00000391814 PCNX1Q96RV3 2341 aa11.66□□□□□ -0.54
SHANK1-204ENST00000391814 AMELXQ99217 191 aa11.65□□□□□ -0.54
SHANK1-204ENST00000391814 Q8NA96 180 aa11.65□□□□□ -0.54
SHANK1-204ENST00000391814 MED12LQ86YW9 2145 aa11.65□□□□□ -0.54
SHANK1-204ENST00000391814 IGHV6-1A0A0B4J1U7 121 aa11.64□□□□□ -0.55
SHANK1-204ENST00000391814 LELP1Q5T871 98 aa11.63□□□□□ -0.55
SHANK1-204ENST00000391814 ZNF706Q9Y5V0 76 aaPredicted RBP11.63□□□□□ -0.55
SHANK1-204ENST00000391814 CIRBP-AS1Q8TBR5 109 aa11.63□□□□□ -0.55
SHANK1-204ENST00000391814 IGLV4-60A0A075B6I1 120 aa11.62□□□□□ -0.55
SHANK1-204ENST00000391814 C19orf84I3L1E1 186 aa11.62□□□□□ -0.55
SHANK1-204ENST00000391814 A8MTW9 85 aa11.61□□□□□ -0.55
SHANK1-204ENST00000391814 FBXL19-AS1Q494R0 122 aa11.61□□□□□ -0.55
SHANK1-204ENST00000391814 SERTAD4-AS1Q5TG53 156 aa11.61□□□□□ -0.55
SHANK1-204ENST00000391814 ZNF702PQ9H963 129 aa11.61□□□□□ -0.55
SHANK1-204ENST00000391814 ZFHX2Q9C0A1 2572 aaPredicted RBP11.6□□□□□ -0.55
SHANK1-204ENST00000391814 PRO0461Q9UI25 63 aa11.6□□□□□ -0.55
SHANK1-204ENST00000391814 ATRXP46100 2492 aa11.6□□□□□ -0.55
SHANK1-204ENST00000391814 Q6ZSN1 163 aa11.6□□□□□ -0.55
SHANK1-204ENST00000391814 FSTL3O95633 263 aa11.59□□□□□ -0.55
SHANK1-204ENST00000391814 HCG22E2RYF7 251 aa11.59□□□□□ -0.55
SHANK1-204ENST00000391814 SMIM29Q86T20 159 aa11.59□□□□□ -0.55
SHANK1-204ENST00000391814 C6orf223Q8N319 242 aa11.59□□□□□ -0.55
SHANK1-204ENST00000391814 CACNA1HO95180 2353 aa11.58□□□□□ -0.55
SHANK1-204ENST00000391814 CXCL6P80162 114 aa11.58□□□□□ -0.56
SHANK1-204ENST00000391814 RAI1Q7Z5J4 1906 aaPredicted RBP11.58□□□□□ -0.56
SHANK1-204ENST00000391814 CPAMD8Q8IZJ3 1885 aa11.58□□□□□ -0.56
SHANK1-204ENST00000391814 KPRPQ5T749 579 aaPredicted RBP11.58□□□□□ -0.56
SHANK1-204ENST00000391814 REG3GQ6UW15 175 aa11.58□□□□□ -0.56
SHANK1-204ENST00000391814 RPS28P62857 69 aaKnown RBP11.57□□□□□ -0.56
SHANK1-204ENST00000391814 LINC01546A6NGU7 62 aa11.57□□□□□ -0.56
SHANK1-204ENST00000391814 IGLV1-40P01703 118 aa11.57□□□□□ -0.56
SHANK1-204ENST00000391814 C11orf71Q6IPW1 123 aa11.57□□□□□ -0.56
SHANK1-204ENST00000391814 MUC7Q8TAX7 377 aa11.57□□□□□ -0.56
SHANK1-204ENST00000391814 FREM1Q5H8C1 2179 aa11.56□□□□□ -0.56
SHANK1-204ENST00000391814 LINC00337Q8N6G1 96 aa11.55□□□□□ -0.56
SHANK1-204ENST00000391814 LTBP2Q14767 1821 aa11.54□□□□□ -0.56
SHANK1-204ENST00000391814 CREBBPQ92793 2442 aa11.54□□□□□ -0.56
SHANK1-204ENST00000391814 LIMD2Q9BT23 127 aa11.53□□□□□ -0.56
SHANK1-204ENST00000391814 CEP192Q8TEP8 1941 aa11.53□□□□□ -0.56
SHANK1-204ENST00000391814 COX8CQ7Z4L0 72 aa11.53□□□□□ -0.56
SHANK1-204ENST00000391814 TRAV10A0A0B4J240 114 aa11.53□□□□□ -0.56
SHANK1-204ENST00000391814 ARHGAP32A7KAX9 2087 aa11.53□□□□□ -0.56
SHANK1-204ENST00000391814 hDV103S1A0JD37 113 aa11.52□□□□□ -0.56
SHANK1-204ENST00000391814 MUC22E2RYF6 1773 aaPredicted RBP11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms