RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 Q6ZVQ6 151 aa6.62□□□□□ -1.35
LIMCH1-202ENST00000381753 ZNF106Q9H2Y7 1883 aaKnown RBP6.62□□□□□ -1.35
LIMCH1-202ENST00000381753 RAI1Q7Z5J4 1906 aaPredicted RBP6.62□□□□□ -1.35
LIMCH1-202ENST00000381753 A0A0B4J2C4 111 aa6.61□□□□□ -1.35
LIMCH1-202ENST00000381753 LINC00959A0A1B0GUT2 108 aa6.61□□□□□ -1.35
LIMCH1-202ENST00000381753 ETDBQ3ZM63 59 aa6.61□□□□□ -1.35
LIMCH1-202ENST00000381753 CDPF1Q6NVV7 123 aa6.61□□□□□ -1.35
LIMCH1-202ENST00000381753 BEAN1Q3B7T3 259 aa6.61□□□□□ -1.35
LIMCH1-202ENST00000381753 A4D1N5 150 aa6.61□□□□□ -1.35
LIMCH1-202ENST00000381753 K7EP34 96 aa6.61□□□□□ -1.35
LIMCH1-202ENST00000381753 LST1O00453 97 aa6.61□□□□□ -1.35
LIMCH1-202ENST00000381753 EPG5Q9HCE0 2579 aa6.61□□□□□ -1.35
LIMCH1-202ENST00000381753 PCNX3Q9H6A9 2034 aa6.6□□□□□ -1.35
LIMCH1-202ENST00000381753 A0A1W2PPM0 123 aa6.6□□□□□ -1.35
LIMCH1-202ENST00000381753 CRYGAP11844 174 aa6.6□□□□□ -1.35
LIMCH1-202ENST00000381753 ANKRD11Q6UB99 2663 aaPredicted RBP6.6□□□□□ -1.35
LIMCH1-202ENST00000381753 TRAV23DV6A0A075B6W5 121 aa6.6□□□□□ -1.35
LIMCH1-202ENST00000381753 K7ERJ3 54 aa6.6□□□□□ -1.35
LIMCH1-202ENST00000381753 NDUFC2O95298 119 aa6.6□□□□□ -1.35
LIMCH1-202ENST00000381753 BPY2O14599 106 aa6.6□□□□□ -1.35
LIMCH1-202ENST00000381753 PTPRSQ13332 1948 aa6.6□□□□□ -1.35
LIMCH1-202ENST00000381753 ADCYAP1P18509 176 aa6.59□□□□□ -1.35
LIMCH1-202ENST00000381753 NUP210LQ5VU65 1888 aa6.59□□□□□ -1.35
LIMCH1-202ENST00000381753 SVIPQ8NHG7 77 aa6.59□□□□□ -1.35
LIMCH1-202ENST00000381753 H3BMG7 143 aa6.59□□□□□ -1.35
LIMCH1-202ENST00000381753 IGKV3D-7A0A0C4DH55 119 aa6.59□□□□□ -1.35
LIMCH1-202ENST00000381753 PRR15LQ9BU68 103 aa6.59□□□□□ -1.35
LIMCH1-202ENST00000381753 TLN1Q9Y490 2541 aaKnown RBP6.59□□□□□ -1.36
LIMCH1-202ENST00000381753 ZNF580Q9UK33 172 aa6.58□□□□□ -1.36
LIMCH1-202ENST00000381753 CYSRT1A8MQ03 144 aa6.58□□□□□ -1.36
LIMCH1-202ENST00000381753 SPANXB1Q9NS25 103 aaPredicted RBP6.58□□□□□ -1.36
LIMCH1-202ENST00000381753 RETNLBQ9BQ08 111 aa6.58□□□□□ -1.36
LIMCH1-202ENST00000381753 TRBV30A0A0K0K1B3 111 aa6.58□□□□□ -1.36
LIMCH1-202ENST00000381753 ZNF726P1Q15940 193 aa6.58□□□□□ -1.36
LIMCH1-202ENST00000381753 ESRGQ1W209 222 aa6.58□□□□□ -1.36
LIMCH1-202ENST00000381753 C9orf116Q5BN46 136 aaPredicted RBP6.58□□□□□ -1.36
LIMCH1-202ENST00000381753 SERP1Q9Y6X1 66 aa6.58□□□□□ -1.36
LIMCH1-202ENST00000381753 FHL2Q14192 279 aa6.57□□□□□ -1.36
LIMCH1-202ENST00000381753 PLXNB3Q9ULL4 1909 aa6.57□□□□□ -1.36
LIMCH1-202ENST00000381753 ATOX1O00244 68 aa6.57□□□□□ -1.36
LIMCH1-202ENST00000381753 KRTAP10-11P60412 298 aa6.57□□□□□ -1.36
LIMCH1-202ENST00000381753 FN1P02751 2386 aaKnown RBP6.57□□□□□ -1.36
LIMCH1-202ENST00000381753 CASC10Q5T4H9 136 aa6.56□□□□□ -1.36
LIMCH1-202ENST00000381753 SPTSSBQ8NFR3 76 aa6.56□□□□□ -1.36
LIMCH1-202ENST00000381753 TEX49A0A1B0GTD5 131 aa6.56□□□□□ -1.36
LIMCH1-202ENST00000381753 C3orf22Q8N5N4 141 aa6.56□□□□□ -1.36
LIMCH1-202ENST00000381753 EXPH5Q8NEV8 1989 aa6.55□□□□□ -1.36
LIMCH1-202ENST00000381753 TOMM6Q96B49 74 aa6.55□□□□□ -1.36
LIMCH1-202ENST00000381753 BRWD1-AS2P59051 145 aa6.55□□□□□ -1.36
LIMCH1-202ENST00000381753 M0R2T5 61 aa6.55□□□□□ -1.36
LIMCH1-202ENST00000381753 CRIP2P52943 208 aaPredicted RBP6.55□□□□□ -1.36
LIMCH1-202ENST00000381753 C11orf86A6NJI1 115 aa6.55□□□□□ -1.36
LIMCH1-202ENST00000381753 MRPL55Q7Z7F7 128 aaKnown RBP6.55□□□□□ -1.36
LIMCH1-202ENST00000381753 ATP11AUNQ6ZP68 121 aa6.55□□□□□ -1.36
LIMCH1-202ENST00000381753 CEP295Q9C0D2 2601 aa6.54□□□□□ -1.36
LIMCH1-202ENST00000381753 IBA57-AS1B1ANH7 110 aa6.54□□□□□ -1.36
LIMCH1-202ENST00000381753 FAM167A-AS1Q96KT0 104 aa6.54□□□□□ -1.36
LIMCH1-202ENST00000381753 TM2D3Q9BRN9 247 aa6.54□□□□□ -1.36
LIMCH1-202ENST00000381753 MUC22E2RYF6 1773 aaPredicted RBP6.53□□□□□ -1.36
LIMCH1-202ENST00000381753 F8WDY8 70 aa6.53□□□□□ -1.36
LIMCH1-202ENST00000381753 TAX1BP3O14907 124 aa6.53□□□□□ -1.36
LIMCH1-202ENST00000381753 ZNF80P51504 273 aaPredicted RBP6.53□□□□□ -1.36
LIMCH1-202ENST00000381753 PIK3CD-AS1Q5SR53 167 aa6.53□□□□□ -1.36
LIMCH1-202ENST00000381753 LRP4O75096 1905 aa6.53□□□□□ -1.36
LIMCH1-202ENST00000381753 MYO9AB2RTY4 2548 aa6.53□□□□□ -1.36
LIMCH1-202ENST00000381753 K7EN84 100 aa6.53□□□□□ -1.36
LIMCH1-202ENST00000381753 KIAA1549Q9HCM3 1950 aa6.53□□□□□ -1.36
LIMCH1-202ENST00000381753 RNF185Q96GF1 192 aa6.52□□□□□ -1.37
LIMCH1-202ENST00000381753 M0QY20 66 aa6.52□□□□□ -1.37
LIMCH1-202ENST00000381753 Q6ZPA2 131 aa6.52□□□□□ -1.37
LIMCH1-202ENST00000381753 P0C879 139 aa6.52□□□□□ -1.37
LIMCH1-202ENST00000381753 LINC00588Q9Y4M8 146 aa6.52□□□□□ -1.37
LIMCH1-202ENST00000381753 CDKN2A-AS1Q9UH64 79 aa6.52□□□□□ -1.37
LIMCH1-202ENST00000381753 ARHGAP32A7KAX9 2087 aa6.52□□□□□ -1.37
LIMCH1-202ENST00000381753 UNQ6190/PRO20217Q6UXQ8 127 aa6.51□□□□□ -1.37
LIMCH1-202ENST00000381753 COL4A2P08572 1712 aa6.51□□□□□ -1.37
LIMCH1-202ENST00000381753 LINC00476Q8WZB0 136 aa6.51□□□□□ -1.37
LIMCH1-202ENST00000381753 LINC00528Q8N1L1 170 aa6.51□□□□□ -1.37
LIMCH1-202ENST00000381753 HECTD1Q9ULT8 2610 aa6.5□□□□□ -1.37
LIMCH1-202ENST00000381753 IGHV6-1A0A0B4J1U7 121 aa6.5□□□□□ -1.37
LIMCH1-202ENST00000381753 KLLNB2CW77 178 aa6.5□□□□□ -1.37
LIMCH1-202ENST00000381753 C10orf142B7Z368 130 aa6.5□□□□□ -1.37
LIMCH1-202ENST00000381753 IMUPQ9GZP8 106 aa6.5□□□□□ -1.37
LIMCH1-202ENST00000381753 E9PLD3 99 aa6.5□□□□□ -1.37
LIMCH1-202ENST00000381753 Q9BRP9 147 aa6.5□□□□□ -1.37
LIMCH1-202ENST00000381753 FAM19A3Q7Z5A8 133 aa6.5□□□□□ -1.37
LIMCH1-202ENST00000381753 CHTF8P0CG12 524 aa6.49□□□□□ -1.37
LIMCH1-202ENST00000381753 TLN2Q9Y4G6 2542 aa6.49□□□□□ -1.37
LIMCH1-202ENST00000381753 FAM236AA0A1B0GUQ0 79 aa6.49□□□□□ -1.37
LIMCH1-202ENST00000381753 FAM236BA0A1B0GV22 79 aa6.49□□□□□ -1.37
LIMCH1-202ENST00000381753 CLEC2BQ92478 149 aa6.49□□□□□ -1.37
LIMCH1-202ENST00000381753 ATG2AQ2TAZ0 1938 aa6.49□□□□□ -1.37
LIMCH1-202ENST00000381753 H3BNG1 76 aa6.48□□□□□ -1.37
LIMCH1-202ENST00000381753 H3BT86 120 aa6.48□□□□□ -1.37
LIMCH1-202ENST00000381753 C6orf99Q4VX62 202 aa6.48□□□□□ -1.37
LIMCH1-202ENST00000381753 J3KT08 172 aa6.48□□□□□ -1.37
LIMCH1-202ENST00000381753 COX17Q14061 63 aa6.48□□□□□ -1.37
LIMCH1-202ENST00000381753 Q8N9L7 120 aa6.48□□□□□ -1.37
LIMCH1-202ENST00000381753 ZNF73O43830 326 aaPredicted RBP6.48□□□□□ -1.37
LIMCH1-202ENST00000381753 IGLC6P0CF74 106 aa6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms