RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 C11orf44Q8N8P7 122 aa11.62□□□□□ -0.55
SDC4-201ENST00000372733 CR1P17927 2039 aa11.62□□□□□ -0.55
SDC4-201ENST00000372733 LOC100131303A0A0U1RQF7 123 aa11.61□□□□□ -0.55
SDC4-201ENST00000372733 UBE2L6O14933 153 aa11.61□□□□□ -0.55
SDC4-201ENST00000372733 NOP10Q9NPE3 64 aaKnown RBP11.61□□□□□ -0.55
SDC4-201ENST00000372733 A0A1W2PRX2 142 aa11.61□□□□□ -0.55
SDC4-201ENST00000372733 TMEM243Q9BU79 118 aa11.61□□□□□ -0.55
SDC4-201ENST00000372733 PTPN13Q12923 2485 aa11.61□□□□□ -0.55
SDC4-201ENST00000372733 IGKV3OR2-268A0A0C4DH90 116 aa11.6□□□□□ -0.55
SDC4-201ENST00000372733 MIR7-3HGQ8N6C7 128 aa11.6□□□□□ -0.55
SDC4-201ENST00000372733 LINC00337Q8N6G1 96 aa11.6□□□□□ -0.55
SDC4-201ENST00000372733 CRPP02741 224 aa11.6□□□□□ -0.55
SDC4-201ENST00000372733 SMIM20Q8N5G0 67 aa11.6□□□□□ -0.55
SDC4-201ENST00000372733 TOMM7Q9P0U1 55 aa11.6□□□□□ -0.55
SDC4-201ENST00000372733 TLN2Q9Y4G6 2542 aa11.6□□□□□ -0.55
SDC4-201ENST00000372733 AKAP9Q99996 3911 aa11.6□□□□□ -0.55
SDC4-201ENST00000372733 HIST2H2BCQ6DN03 193 aa11.59□□□□□ -0.55
SDC4-201ENST00000372733 LINC00643Q86TS7 51 aa11.59□□□□□ -0.55
SDC4-201ENST00000372733 JMJD1CQ15652 2540 aa11.58□□□□□ -0.56
SDC4-201ENST00000372733 ABCA12Q86UK0 2595 aa11.58□□□□□ -0.56
SDC4-201ENST00000372733 IGKV2-28A0A075B6P5 120 aa11.58□□□□□ -0.56
SDC4-201ENST00000372733 IGKV2D-28P01615 120 aa11.58□□□□□ -0.56
SDC4-201ENST00000372733 COX7B2Q8TF08 81 aa11.58□□□□□ -0.56
SDC4-201ENST00000372733 NAV2Q8IVL1 2488 aa11.58□□□□□ -0.56
SDC4-201ENST00000372733 FAM222AQ5U5X8 452 aa11.57□□□□□ -0.56
SDC4-201ENST00000372733 GAGE2AQ6NT46 116 aa11.57□□□□□ -0.56
SDC4-201ENST00000372733 IMUPQ9GZP8 106 aa11.57□□□□□ -0.56
SDC4-201ENST00000372733 TRAV13-2A0A0B4J235 113 aa11.57□□□□□ -0.56
SDC4-201ENST00000372733 RPL28P46779 137 aaKnown RBP11.57□□□□□ -0.56
SDC4-201ENST00000372733 SND1-IT1Q9HBX3 110 aa11.57□□□□□ -0.56
SDC4-201ENST00000372733 NIPBLQ6KC79 2804 aaeCLIP11.56□□□□□ -0.56
SDC4-201ENST00000372733 MALP21145 153 aa11.56□□□□□ -0.56
SDC4-201ENST00000372733 KRTAP10-9P60411 292 aa11.56□□□□□ -0.56
SDC4-201ENST00000372733 TRGV2A0A075B6R0 118 aa11.55□□□□□ -0.56
SDC4-201ENST00000372733 A0A087WYN8 130 aa11.55□□□□□ -0.56
SDC4-201ENST00000372733 SDIM1Q6ZPB5 146 aa11.55□□□□□ -0.56
SDC4-201ENST00000372733 WFDC10AQ9H1F0 79 aa11.55□□□□□ -0.56
SDC4-201ENST00000372733 SONP18583 2426 aaKnown RBP11.55□□□□□ -0.56
SDC4-201ENST00000372733 LINC00158P58513 81 aa11.55□□□□□ -0.56
SDC4-201ENST00000372733 TRAV25A0A0B4J276 109 aa11.54□□□□□ -0.56
SDC4-201ENST00000372733 INAFM2P0DMQ5 153 aa11.54□□□□□ -0.56
SDC4-201ENST00000372733 SMIM11BQ8TCY0 68 aa11.54□□□□□ -0.56
SDC4-201ENST00000372733 PPDPFQ9H3Y8 114 aa11.54□□□□□ -0.56
SDC4-201ENST00000372733 SETXQ7Z333 2677 aaKnown RBP11.54□□□□□ -0.56
SDC4-201ENST00000372733 IGLV4-60A0A075B6I1 120 aa11.54□□□□□ -0.56
SDC4-201ENST00000372733 PLAC8L1A1L4L8 177 aa11.54□□□□□ -0.56
SDC4-201ENST00000372733 PF4P02776 101 aa11.54□□□□□ -0.56
SDC4-201ENST00000372733 GIG44P09565 113 aaPredicted RBP11.54□□□□□ -0.56
SDC4-201ENST00000372733 C9orf129Q5T035 196 aaKnown RBP11.54□□□□□ -0.56
SDC4-201ENST00000372733 PLA2G2AP14555 144 aa11.53□□□□□ -0.56
SDC4-201ENST00000372733 CCL18P55774 89 aa11.52□□□□□ -0.57
SDC4-201ENST00000372733 NF1P21359 2839 aa11.52□□□□□ -0.57
SDC4-201ENST00000372733 CCL24O00175 119 aa11.51□□□□□ -0.57
SDC4-201ENST00000372733 DNAL4O96015 105 aa11.51□□□□□ -0.57
SDC4-201ENST00000372733 RPL35AP18077 110 aaKnown RBP11.51□□□□□ -0.57
SDC4-201ENST00000372733 FAM110AQ9BQ89 295 aa11.51□□□□□ -0.57
SDC4-201ENST00000372733 SETD2Q9BYW2 2564 aaPredicted RBP11.51□□□□□ -0.57
SDC4-201ENST00000372733 PFN2P35080 140 aa11.51□□□□□ -0.57
SDC4-201ENST00000372733 ATP5G1P05496 136 aa11.5□□□□□ -0.57
SDC4-201ENST00000372733 C14orf132Q9NPU4 83 aa11.5□□□□□ -0.57
SDC4-201ENST00000372733 TRGV4A0A0C4DH28 118 aa11.5□□□□□ -0.57
SDC4-201ENST00000372733 C5orf38Q86SI9 138 aa11.5□□□□□ -0.57
SDC4-201ENST00000372733 ZNF469Q96JG9 3925 aaPredicted RBP11.49□□□□□ -0.57
SDC4-201ENST00000372733 IGHV3OR16-9A0A0B4J2B5 98 aa11.49□□□□□ -0.57
SDC4-201ENST00000372733 C16orf74Q96GX8 76 aa11.49□□□□□ -0.57
SDC4-201ENST00000372733 C11orf68Q9H3H3 251 aaKnown RBP11.49□□□□□ -0.57
SDC4-201ENST00000372733 C9orf153Q5TBE3 101 aa11.49□□□□□ -0.57
SDC4-201ENST00000372733 BBC3Q96PG8 261 aaPredicted RBP11.49□□□□□ -0.57
SDC4-201ENST00000372733 NBPF19A0A087WUL8 3843 aa11.49□□□□□ -0.57
SDC4-201ENST00000372733 TRBV6-4A0A1B0GX49 114 aa11.48□□□□□ -0.57
SDC4-201ENST00000372733 C3orf22Q8N5N4 141 aa11.47□□□□□ -0.57
SDC4-201ENST00000372733 OVOL2Q9BRP0 275 aa11.47□□□□□ -0.57
SDC4-201ENST00000372733 TRBV6-8A0A0A6YYG3 113 aa11.47□□□□□ -0.57
SDC4-201ENST00000372733 LECT2O14960 151 aa11.47□□□□□ -0.57
SDC4-201ENST00000372733 TMEM126AQ9H061 195 aa11.47□□□□□ -0.57
SDC4-201ENST00000372733 DNAJC9-AS1A6NH13 148 aa11.46□□□□□ -0.57
SDC4-201ENST00000372733 CXCL5P42830 114 aa11.46□□□□□ -0.57
SDC4-201ENST00000372733 PAX4O43316 350 aa11.46□□□□□ -0.58
SDC4-201ENST00000372733 DEFB113Q30KQ7 82 aa11.46□□□□□ -0.58
SDC4-201ENST00000372733 LRRC75A-AS1Q8N1F1 130 aa11.46□□□□□ -0.58
SDC4-201ENST00000372733 IBA57-AS1B1ANH7 110 aa11.45□□□□□ -0.58
SDC4-201ENST00000372733 OR13C6PQ8NH95 151 aa11.45□□□□□ -0.58
SDC4-201ENST00000372733 A0A087WZ39 114 aa11.45□□□□□ -0.58
SDC4-201ENST00000372733 SLPIP03973 132 aa11.45□□□□□ -0.58
SDC4-201ENST00000372733 UQCRQO14949 82 aa11.44□□□□□ -0.58
SDC4-201ENST00000372733 FHL2Q14192 279 aa11.44□□□□□ -0.58
SDC4-201ENST00000372733 H0YGX0 51 aa11.43□□□□□ -0.58
SDC4-201ENST00000372733 NCR3O14931 201 aa11.43□□□□□ -0.58
SDC4-201ENST00000372733 IGKV3D-7A0A0C4DH55 119 aa11.42□□□□□ -0.58
SDC4-201ENST00000372733 ESM1Q9NQ30 184 aa11.42□□□□□ -0.58
SDC4-201ENST00000372733 CSNK1G2-AS1Q8NCQ2 148 aa11.42□□□□□ -0.58
SDC4-201ENST00000372733 LINC00846Q9NV44 126 aa11.42□□□□□ -0.58
SDC4-201ENST00000372733 LINC00526Q96FQ7 95 aa11.41□□□□□ -0.58
SDC4-201ENST00000372733 KLK5Q9Y337 293 aaPredicted RBP11.41□□□□□ -0.58
SDC4-201ENST00000372733 ITPR3Q14573 2671 aa11.41□□□□□ -0.58
SDC4-201ENST00000372733 CCDC168Q8NDH2 2452 aa11.41□□□□□ -0.58
SDC4-201ENST00000372733 LINC00959A0A1B0GUT2 108 aa11.41□□□□□ -0.58
SDC4-201ENST00000372733 TMEM86BQ8N661 226 aa11.41□□□□□ -0.58
SDC4-201ENST00000372733 OBSCN-AS1Q96MR7 158 aa11.41□□□□□ -0.58
SDC4-201ENST00000372733 C19orf73Q9NVV2 129 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 165.2 ms