RNA–Protein interactions for RNA: ENST00000357806.11

CLN3-203, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,469 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-203ENST00000357806 IGIPA6NJ69 53 aa10.93□□□□□ -0.66
CLN3-203ENST00000357806 PAPPA-AS1Q5QFB9 102 aa10.93□□□□□ -0.66
CLN3-203ENST00000357806 TIMM17AQ99595 171 aa10.93□□□□□ -0.66
CLN3-203ENST00000357806 CHAC1Q9BUX1 264 aa10.93□□□□□ -0.66
CLN3-203ENST00000357806 IGHV3OR16-9A0A0B4J2B5 98 aa10.92□□□□□ -0.66
CLN3-203ENST00000357806 EPM2AB3EWF7 344 aa10.92□□□□□ -0.66
CLN3-203ENST00000357806 SMR3BP02814 79 aaPredicted RBP10.92□□□□□ -0.66
CLN3-203ENST00000357806 CBLN2Q8IUK8 224 aa10.92□□□□□ -0.66
CLN3-203ENST00000357806 AMELXQ99217 191 aa10.92□□□□□ -0.66
CLN3-203ENST00000357806 KRTAP4-5Q9BYR2 181 aa10.92□□□□□ -0.66
CLN3-203ENST00000357806 VCX2Q9H322 139 aa10.92□□□□□ -0.66
CLN3-203ENST00000357806 SDIM1Q6ZPB5 146 aa10.91□□□□□ -0.66
CLN3-203ENST00000357806 LINC00173Q6ZV60 143 aa10.91□□□□□ -0.66
CLN3-203ENST00000357806 C18orf32Q8TCD1 76 aa10.91□□□□□ -0.66
CLN3-203ENST00000357806 UBE2D1P51668 147 aa10.9□□□□□ -0.66
CLN3-203ENST00000357806 Q5VSD8 79 aa10.9□□□□□ -0.66
CLN3-203ENST00000357806 ERASQ7Z444 233 aa10.9□□□□□ -0.66
CLN3-203ENST00000357806 LINC00526Q96FQ7 95 aa10.9□□□□□ -0.66
CLN3-203ENST00000357806 CARD19Q96LW7 228 aa10.9□□□□□ -0.66
CLN3-203ENST00000357806 LINC00242Q5T6M2 205 aa10.89□□□□□ -0.67
CLN3-203ENST00000357806 OR10D4PQ8NGN7 298 aa10.89□□□□□ -0.67
CLN3-203ENST00000357806 CIRBP-AS1Q8TBR5 109 aa10.89□□□□□ -0.67
CLN3-203ENST00000357806 SCGB3A1Q96QR1 104 aa10.89□□□□□ -0.67
CLN3-203ENST00000357806 IGLV4-69A0A075B6H9 119 aa10.88□□□□□ -0.67
CLN3-203ENST00000357806 FAM229AH3BQW9 127 aa10.88□□□□□ -0.67
CLN3-203ENST00000357806 ZC2HC1BQ5TFG8 222 aa10.88□□□□□ -0.67
CLN3-203ENST00000357806 PKIGQ9Y2B9 76 aa10.88□□□□□ -0.67
CLN3-203ENST00000357806 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.88□□□□□ -0.67
CLN3-203ENST00000357806 SPAG11BQ08648 103 aa10.87□□□□□ -0.67
CLN3-203ENST00000357806 SYCNQ0VAF6 134 aa10.87□□□□□ -0.67
CLN3-203ENST00000357806 ORAOV1Q8WV07 137 aa10.87□□□□□ -0.67
CLN3-203ENST00000357806 LINC00614P0C842 121 aa10.87□□□□□ -0.67
CLN3-203ENST00000357806 S100A1P23297 94 aa10.87□□□□□ -0.67
CLN3-203ENST00000357806 COX6A2Q02221 97 aa10.87□□□□□ -0.67
CLN3-203ENST00000357806 A0A087WZ39 114 aa10.86□□□□□ -0.67
CLN3-203ENST00000357806 RAB5BP61020 215 aa10.86□□□□□ -0.67
CLN3-203ENST00000357806 CIRBPQ14011 172 aaKnown RBP10.86□□□□□ -0.67
CLN3-203ENST00000357806 FAM19A3Q7Z5A8 133 aa10.86□□□□□ -0.67
CLN3-203ENST00000357806 C2orf48Q96LS8 159 aa10.86□□□□□ -0.67
CLN3-203ENST00000357806 CAMK2N2Q96S95 79 aa10.86□□□□□ -0.67
CLN3-203ENST00000357806 PANO1I0J062 215 aa10.85□□□□□ -0.67
CLN3-203ENST00000357806 SEC11AP67812 179 aa10.85□□□□□ -0.67
CLN3-203ENST00000357806 LINC00528Q8N1L1 170 aa10.85□□□□□ -0.67
CLN3-203ENST00000357806 URB1-AS1Q96HZ7 61 aa10.85□□□□□ -0.67
CLN3-203ENST00000357806 CHTF8P0CG12 524 aa10.84□□□□□ -0.67
CLN3-203ENST00000357806 Q6ZRU5 148 aa10.84□□□□□ -0.67
CLN3-203ENST00000357806 SPACA4Q8TDM5 124 aa10.84□□□□□ -0.67
CLN3-203ENST00000357806 HBDP02042 147 aa10.83□□□□□ -0.68
CLN3-203ENST00000357806 HERVK_113P63121 156 aa10.83□□□□□ -0.68
CLN3-203ENST00000357806 LINC01561Q8N1V8 128 aa10.83□□□□□ -0.68
CLN3-203ENST00000357806 FAT1Q14517 4588 aa10.83□□□□□ -0.68
CLN3-203ENST00000357806 A0A096LNJ9 63 aa10.82□□□□□ -0.68
CLN3-203ENST00000357806 F8WDY8 70 aa10.82□□□□□ -0.68
CLN3-203ENST00000357806 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.82□□□□□ -0.68
CLN3-203ENST00000357806 GEMIN7Q9H840 131 aaKnown RBP10.82□□□□□ -0.68
CLN3-203ENST00000357806 IGKV2-24A0A0C4DH68 120 aa10.81□□□□□ -0.68
CLN3-203ENST00000357806 DPH3Q96FX2 82 aa10.81□□□□□ -0.68
CLN3-203ENST00000357806 PCLOQ9Y6V0 5065 aa10.81□□□□□ -0.68
CLN3-203ENST00000357806 A0A096LNI7 61 aa10.81□□□□□ -0.68
CLN3-203ENST00000357806 PLA2G1BP04054 148 aaKnown RBP10.81□□□□□ -0.68
CLN3-203ENST00000357806 PMVKQ15126 192 aa10.81□□□□□ -0.68
CLN3-203ENST00000357806 LINC00474Q9P2X8 69 aa10.81□□□□□ -0.68
CLN3-203ENST00000357806 NDUFA1O15239 70 aa10.8□□□□□ -0.68
CLN3-203ENST00000357806 PMCHL1Q16048 86 aa10.8□□□□□ -0.68
CLN3-203ENST00000357806 A0A087WYN8 130 aa10.79□□□□□ -0.68
CLN3-203ENST00000357806 A0A0J9YXV3 536 aa10.79□□□□□ -0.68
CLN3-203ENST00000357806 LOC107984640A0A0U1RRK4 108 aa10.79□□□□□ -0.68
CLN3-203ENST00000357806 TRGC2P03986 189 aa10.79□□□□□ -0.68
CLN3-203ENST00000357806 MAJINQ3KP22 176 aa10.79□□□□□ -0.68
CLN3-203ENST00000357806 CHCHD1Q96BP2 118 aaKnown RBP10.79□□□□□ -0.68
CLN3-203ENST00000357806 PACRGQ96M98 296 aaPredicted RBP10.79□□□□□ -0.68
CLN3-203ENST00000357806 CST9LQ9H4G1 147 aa10.79□□□□□ -0.68
CLN3-203ENST00000357806 MRPL35Q9NZE8 188 aaKnown RBP10.79□□□□□ -0.68
CLN3-203ENST00000357806 ABCA13Q86UQ4 5058 aa10.79□□□□□ -0.68
CLN3-203ENST00000357806 VPS13BQ7Z7G8 4022 aa10.79□□□□□ -0.68
CLN3-203ENST00000357806 TINCRA0A1B0GVN0 87 aa10.78□□□□□ -0.68
CLN3-203ENST00000357806 RNF151Q2KHN1 245 aa10.78□□□□□ -0.68
CLN3-203ENST00000357806 CDKN2A-AS1Q9UH64 79 aa10.78□□□□□ -0.68
CLN3-203ENST00000357806 KIAA0087Q14695 138 aa10.77□□□□□ -0.69
CLN3-203ENST00000357806 PLAC8Q9NZF1 115 aa10.77□□□□□ -0.69
CLN3-203ENST00000357806 ATP5LO75964 103 aa10.76□□□□□ -0.69
CLN3-203ENST00000357806 PRSS2P07478 247 aa10.76□□□□□ -0.69
CLN3-203ENST00000357806 PDZD11Q5EBL8 140 aa10.76□□□□□ -0.69
CLN3-203ENST00000357806 LINC00469Q8N7U9 141 aa10.76□□□□□ -0.69
CLN3-203ENST00000357806 COLCA2A8K830 154 aa10.75□□□□□ -0.69
CLN3-203ENST00000357806 INAFM2P0DMQ5 153 aa10.75□□□□□ -0.69
CLN3-203ENST00000357806 PTTG1IPP53801 180 aa10.75□□□□□ -0.69
CLN3-203ENST00000357806 RPL18AQ02543 176 aaKnown RBP10.75□□□□□ -0.69
CLN3-203ENST00000357806 BAGE3Q86Y29 109 aa10.75□□□□□ -0.69
CLN3-203ENST00000357806 STPG4Q8N801 248 aa10.75□□□□□ -0.69
CLN3-203ENST00000357806 TOMM7Q9P0U1 55 aa10.75□□□□□ -0.69
CLN3-203ENST00000357806 IGLV5-45A0A087WSX0 123 aa10.74□□□□□ -0.69
CLN3-203ENST00000357806 NDUFA6P56556 154 aa10.74□□□□□ -0.69
CLN3-203ENST00000357806 GAGE2BQ13066 116 aa10.74□□□□□ -0.69
CLN3-203ENST00000357806 UNQ6190/PRO20217Q6UXQ8 127 aa10.74□□□□□ -0.69
CLN3-203ENST00000357806 Q8IZM0 81 aa10.74□□□□□ -0.69
CLN3-203ENST00000357806 HSBP1O75506 76 aa10.74□□□□□ -0.69
CLN3-203ENST00000357806 C10orf25Q5T742 122 aa10.74□□□□□ -0.69
CLN3-203ENST00000357806 C6orf48Q9UBA6 75 aa10.74□□□□□ -0.69
CLN3-203ENST00000357806 TRBV30A0A0K0K1B3 111 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 9 ms