RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 C5orf38Q86SI9 138 aa14.52□□□□□ -0.08
SHMT1-203ENST00000354098 C15orf56Q8N910 161 aa14.52□□□□□ -0.08
SHMT1-203ENST00000354098 IGHV3OR16-9A0A0B4J2B5 98 aa14.52□□□□□ -0.09
SHMT1-203ENST00000354098 PMVKQ15126 192 aa14.52□□□□□ -0.09
SHMT1-203ENST00000354098 ATP5LO75964 103 aa14.51□□□□□ -0.09
SHMT1-203ENST00000354098 PRSS1P07477 247 aa14.51□□□□□ -0.09
SHMT1-203ENST00000354098 COX7A2LO14548 114 aa14.5□□□□□ -0.09
SHMT1-203ENST00000354098 NDUFA6P56556 154 aa14.5□□□□□ -0.09
SHMT1-203ENST00000354098 A0A0J9YXV3 536 aa14.49□□□□□ -0.09
SHMT1-203ENST00000354098 FAM19A3Q7Z5A8 133 aa14.49□□□□□ -0.09
SHMT1-203ENST00000354098 PGPEP1Q9NXJ5 209 aa14.49□□□□□ -0.09
SHMT1-203ENST00000354098 PKHD1P08F94 4074 aa14.48□□□□□ -0.09
SHMT1-203ENST00000354098 HIGD2BQ4VC39 106 aa14.48□□□□□ -0.09
SHMT1-203ENST00000354098 C14orf177Q52M58 125 aa14.48□□□□□ -0.09
SHMT1-203ENST00000354098 CFAP161Q6P656 301 aa14.48□□□□□ -0.09
SHMT1-203ENST00000354098 IFI27L1Q96BM0 104 aa14.48□□□□□ -0.09
SHMT1-203ENST00000354098 hDV102S1A0JD36 115 aa14.47□□□□□ -0.09
SHMT1-203ENST00000354098 MALP21145 153 aa14.47□□□□□ -0.09
SHMT1-203ENST00000354098 LEPROTL1O95214 131 aa14.46□□□□□ -0.09
SHMT1-203ENST00000354098 FABP4P15090 132 aa14.46□□□□□ -0.09
SHMT1-203ENST00000354098 COA6Q5JTJ3 125 aaKnown RBP14.46□□□□□ -0.09
SHMT1-203ENST00000354098 IGHV1-58A0A0C4DH39 117 aa14.46□□□□□ -0.1
SHMT1-203ENST00000354098 NTN5Q8WTR8 489 aaPredicted RBP14.46□□□□□ -0.1
SHMT1-203ENST00000354098 IGLV5-52A0A0A0MRZ9 124 aa14.45□□□□□ -0.1
SHMT1-203ENST00000354098 LINC00526Q96FQ7 95 aa14.44□□□□□ -0.1
SHMT1-203ENST00000354098 A0A087WZ39 114 aa14.43□□□□□ -0.1
SHMT1-203ENST00000354098 GVQW2A0A096LPI5 108 aaPredicted RBP14.43□□□□□ -0.1
SHMT1-203ENST00000354098 TINCRA0A1B0GVN0 87 aa14.43□□□□□ -0.1
SHMT1-203ENST00000354098 C16orf90A8MZG2 172 aa14.43□□□□□ -0.1
SHMT1-203ENST00000354098 SLPIP03973 132 aa14.43□□□□□ -0.1
SHMT1-203ENST00000354098 HERVK_113P63121 156 aa14.43□□□□□ -0.1
SHMT1-203ENST00000354098 SEC11AP67812 179 aa14.43□□□□□ -0.1
SHMT1-203ENST00000354098 CDPF1Q6NVV7 123 aa14.43□□□□□ -0.1
SHMT1-203ENST00000354098 GEMIN7Q9H840 131 aaKnown RBP14.43□□□□□ -0.1
SHMT1-203ENST00000354098 CDKN2A-AS1Q9UH64 79 aa14.43□□□□□ -0.1
SHMT1-203ENST00000354098 DNAH5Q8TE73 4624 aa14.41□□□□□ -0.1
SHMT1-203ENST00000354098 IGLV4-69A0A075B6H9 119 aa14.41□□□□□ -0.1
SHMT1-203ENST00000354098 LINC01620Q4KN68 170 aa14.41□□□□□ -0.1
SHMT1-203ENST00000354098 HSPB8Q9UJY1 196 aa14.4□□□□□ -0.1
SHMT1-203ENST00000354098 IGHV3-64A0A075B6Q5 118 aa14.39□□□□□ -0.11
SHMT1-203ENST00000354098 TRAV12-1A0A0B4J245 112 aa14.39□□□□□ -0.11
SHMT1-203ENST00000354098 H0Y8G0 127 aa14.39□□□□□ -0.11
SHMT1-203ENST00000354098 APOMO95445 188 aa14.39□□□□□ -0.11
SHMT1-203ENST00000354098 IGLC3P0DOY3 106 aa14.39□□□□□ -0.11
SHMT1-203ENST00000354098 LINC00469Q8N7U9 141 aa14.39□□□□□ -0.11
SHMT1-203ENST00000354098 ORAOV1Q8WV07 137 aa14.39□□□□□ -0.11
SHMT1-203ENST00000354098 CHTOPQ9Y3Y2 248 aaKnown RBP14.39□□□□□ -0.11
SHMT1-203ENST00000354098 IGLV5-45A0A087WSX0 123 aa14.38□□□□□ -0.11
SHMT1-203ENST00000354098 ZNF561-AS1K7EIQ3 104 aa14.38□□□□□ -0.11
SHMT1-203ENST00000354098 CHAC1Q9BUX1 264 aa14.38□□□□□ -0.11
SHMT1-203ENST00000354098 GCSHP23434 173 aa14.37□□□□□ -0.11
SHMT1-203ENST00000354098 CNBPP62633 177 aaKnown RBP14.37□□□□□ -0.11
SHMT1-203ENST00000354098 KRTAP10-1P60331 282 aa14.36□□□□□ -0.11
SHMT1-203ENST00000354098 SPAG11BQ08648 103 aa14.36□□□□□ -0.11
SHMT1-203ENST00000354098 LINC01561Q8N1V8 128 aa14.36□□□□□ -0.11
SHMT1-203ENST00000354098 MRPL35Q9NZE8 188 aaKnown RBP14.36□□□□□ -0.11
SHMT1-203ENST00000354098 C11orf86A6NJI1 115 aa14.36□□□□□ -0.11
SHMT1-203ENST00000354098 OR10D4PQ8NGN7 298 aa14.36□□□□□ -0.11
SHMT1-203ENST00000354098 ODF1Q14990 250 aa14.34□□□□□ -0.11
SHMT1-203ENST00000354098 ZNF22P17026 224 aaPredicted RBP14.33□□□□□ -0.11
SHMT1-203ENST00000354098 C9orf163Q8N9P6 203 aa14.33□□□□□ -0.11
SHMT1-203ENST00000354098 PACRGQ96M98 296 aaPredicted RBP14.33□□□□□ -0.11
SHMT1-203ENST00000354098 DYNC1H1Q14204 4646 aaKnown RBP14.33□□□□□ -0.12
SHMT1-203ENST00000354098 F8VRH5 84 aa14.33□□□□□ -0.12
SHMT1-203ENST00000354098 SPINK8P0C7L1 97 aa14.33□□□□□ -0.12
SHMT1-203ENST00000354098 KIAA0087Q14695 138 aa14.33□□□□□ -0.12
SHMT1-203ENST00000354098 MAP1LC3CQ9BXW4 147 aa14.33□□□□□ -0.12
SHMT1-203ENST00000354098 SMIM1B2RUZ4 78 aa14.32□□□□□ -0.12
SHMT1-203ENST00000354098 TRAV16A0A0A6YYK6 109 aaPredicted RBP14.31□□□□□ -0.12
SHMT1-203ENST00000354098 S100A6P06703 90 aa14.3□□□□□ -0.12
SHMT1-203ENST00000354098 SYCNQ0VAF6 134 aa14.3□□□□□ -0.12
SHMT1-203ENST00000354098 C2orf48Q96LS8 159 aa14.3□□□□□ -0.12
SHMT1-203ENST00000354098 CAMK2N2Q96S95 79 aa14.3□□□□□ -0.12
SHMT1-203ENST00000354098 PMCHL2Q9BQD1 86 aa14.3□□□□□ -0.12
SHMT1-203ENST00000354098 TOMM7Q9P0U1 55 aa14.3□□□□□ -0.12
SHMT1-203ENST00000354098 LRP1BQ9NZR2 4599 aa14.3□□□□□ -0.12
SHMT1-203ENST00000354098 TMEM170BQ5T4T1 132 aa14.3□□□□□ -0.12
SHMT1-203ENST00000354098 Q6ZRU5 148 aa14.3□□□□□ -0.12
SHMT1-203ENST00000354098 H3BRM9 83 aa14.29□□□□□ -0.12
SHMT1-203ENST00000354098 SYS1-DBNDD2H3BUS1 97 aa14.29□□□□□ -0.12
SHMT1-203ENST00000354098 HIST3H2BBQ8N257 126 aa14.29□□□□□ -0.12
SHMT1-203ENST00000354098 CARD19Q96LW7 228 aa14.28□□□□□ -0.12
SHMT1-203ENST00000354098 C10orf25Q5T742 122 aa14.27□□□□□ -0.12
SHMT1-203ENST00000354098 C2orf82Q6UX34 121 aa14.27□□□□□ -0.12
SHMT1-203ENST00000354098 C3orf79P0CE67 100 aa14.26□□□□□ -0.13
SHMT1-203ENST00000354098 SNRPEP62304 92 aaKnown RBP14.26□□□□□ -0.13
SHMT1-203ENST00000354098 UNQ6190/PRO20217Q6UXQ8 127 aa14.26□□□□□ -0.13
SHMT1-203ENST00000354098 FAM30AQ9NZY2 134 aa14.26□□□□□ -0.13
SHMT1-203ENST00000354098 PRSS2P07478 247 aa14.26□□□□□ -0.13
SHMT1-203ENST00000354098 C6orf226Q5I0X4 101 aa14.26□□□□□ -0.13
SHMT1-203ENST00000354098 SDIM1Q6ZPB5 146 aa14.26□□□□□ -0.13
SHMT1-203ENST00000354098 Q8IZM0 81 aa14.26□□□□□ -0.13
SHMT1-203ENST00000354098 BIRC6Q9NR09 4857 aa14.25□□□□□ -0.13
SHMT1-203ENST00000354098 KRTDAPP60985 99 aa14.24□□□□□ -0.13
SHMT1-203ENST00000354098 COX7B2Q8TF08 81 aa14.24□□□□□ -0.13
SHMT1-203ENST00000354098 HIST1H2BLQ99880 126 aa14.24□□□□□ -0.13
SHMT1-203ENST00000354098 IGLV5-39A0A0G2JS06 123 aa14.23□□□□□ -0.13
SHMT1-203ENST00000354098 NDUFA1O15239 70 aa14.23□□□□□ -0.13
SHMT1-203ENST00000354098 TMEM223A0PJW6 202 aa14.23□□□□□ -0.13
SHMT1-203ENST00000354098 DPM2O94777 84 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 333.3 ms