RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 LINC00242Q5T6M2 205 aa12.73□□□□□ -0.37
USP39-201ENST00000323701 TRAV8-3A0A0A6YYJ7 113 aa12.72□□□□□ -0.37
USP39-201ENST00000323701 TEX48A0A1B0GUV7 120 aa12.72□□□□□ -0.37
USP39-201ENST00000323701 CEND1Q8N111 149 aa12.72□□□□□ -0.37
USP39-201ENST00000323701 CDKN2A-AS1Q9UH64 79 aa12.72□□□□□ -0.37
USP39-201ENST00000323701 SMIM13P0DJ93 91 aa12.71□□□□□ -0.37
USP39-201ENST00000323701 TM2D2Q9BX73 214 aa12.71□□□□□ -0.37
USP39-201ENST00000323701 MYMXA0A1B0GTQ4 84 aa12.7□□□□□ -0.38
USP39-201ENST00000323701 PLEKHB2Q96CS7 222 aa12.7□□□□□ -0.38
USP39-201ENST00000323701 TMEM101Q96IK0 257 aa12.7□□□□□ -0.38
USP39-201ENST00000323701 SPATA25Q9BR10 227 aa12.7□□□□□ -0.38
USP39-201ENST00000323701 IGKV3OR2-268A0A0C4DH90 116 aa12.7□□□□□ -0.38
USP39-201ENST00000323701 HERVK_113P61574 105 aa12.7□□□□□ -0.38
USP39-201ENST00000323701 MRPL23Q16540 153 aaKnown RBP12.7□□□□□ -0.38
USP39-201ENST00000323701 SPINK8P0C7L1 97 aa12.69□□□□□ -0.38
USP39-201ENST00000323701 NHP2Q9NX24 153 aaKnown RBP12.69□□□□□ -0.38
USP39-201ENST00000323701 ZNF815PA8K554 130 aa12.69□□□□□ -0.38
USP39-201ENST00000323701 TMEM262E9PQX1 116 aa12.69□□□□□ -0.38
USP39-201ENST00000323701 J3QQQ9 107 aa12.69□□□□□ -0.38
USP39-201ENST00000323701 C11orf45Q8TAV5 145 aa12.69□□□□□ -0.38
USP39-201ENST00000323701 GEMIN7Q9H840 131 aaKnown RBP12.69□□□□□ -0.38
USP39-201ENST00000323701 ICOSQ9Y6W8 199 aa12.69□□□□□ -0.38
USP39-201ENST00000323701 PRKDCP78527 4128 aaKnown RBP12.67□□□□□ -0.38
USP39-201ENST00000323701 IGLV5-45A0A087WSX0 123 aa12.67□□□□□ -0.38
USP39-201ENST00000323701 IGHV3-30-3P0DP02 117 aa12.67□□□□□ -0.38
USP39-201ENST00000323701 TIRAPP58753 221 aa12.67□□□□□ -0.38
USP39-201ENST00000323701 FAM19A3Q7Z5A8 133 aa12.67□□□□□ -0.38
USP39-201ENST00000323701 MEGF8Q7Z7M0 2845 aa12.67□□□□□ -0.38
USP39-201ENST00000323701 LEPROTO15243 131 aa12.66□□□□□ -0.38
USP39-201ENST00000323701 SMAGPQ0VAQ4 97 aa12.66□□□□□ -0.38
USP39-201ENST00000323701 SCGB1A1P11684 91 aa12.66□□□□□ -0.38
USP39-201ENST00000323701 TAL2Q16559 108 aa12.64□□□□□ -0.39
USP39-201ENST00000323701 CLPSL2Q6UWE3 100 aa12.64□□□□□ -0.39
USP39-201ENST00000323701 HIST1H4GQ99525 98 aa12.64□□□□□ -0.39
USP39-201ENST00000323701 DEFB131BA0A096LNP1 70 aa12.64□□□□□ -0.39
USP39-201ENST00000323701 A0A1B0GUV1 79 aa12.64□□□□□ -0.39
USP39-201ENST00000323701 RPL24P83731 157 aaKnown RBP12.64□□□□□ -0.39
USP39-201ENST00000323701 LYPD5Q6UWN5 251 aa12.64□□□□□ -0.39
USP39-201ENST00000323701 IGHV1-58A0A0C4DH39 117 aa12.63□□□□□ -0.39
USP39-201ENST00000323701 HERVK_113P63121 156 aa12.63□□□□□ -0.39
USP39-201ENST00000323701 LGALS3P17931 250 aaKnown RBP12.63□□□□□ -0.39
USP39-201ENST00000323701 C10orf126Q8N4M7 172 aa12.62□□□□□ -0.39
USP39-201ENST00000323701 LELP1Q5T871 98 aa12.61□□□□□ -0.39
USP39-201ENST00000323701 SCGB1D4Q6XE38 83 aa12.61□□□□□ -0.39
USP39-201ENST00000323701 LINC00959A0A1B0GUT2 108 aa12.6□□□□□ -0.39
USP39-201ENST00000323701 SMIM1B2RUZ4 78 aa12.6□□□□□ -0.39
USP39-201ENST00000323701 IGLL5B9A064 214 aa12.6□□□□□ -0.39
USP39-201ENST00000323701 H3BNG1 76 aa12.6□□□□□ -0.39
USP39-201ENST00000323701 SIGMAR1Q99720 223 aa12.6□□□□□ -0.39
USP39-201ENST00000323701 LINC00269Q8N2A0 174 aa12.6□□□□□ -0.39
USP39-201ENST00000323701 IGLV5-39A0A0G2JS06 123 aa12.59□□□□□ -0.39
USP39-201ENST00000323701 SH2D6Q7Z4S9 175 aa12.59□□□□□ -0.39
USP39-201ENST00000323701 F8W1H4 67 aa12.59□□□□□ -0.39
USP39-201ENST00000323701 J3QR89 54 aa12.58□□□□□ -0.4
USP39-201ENST00000323701 IGHV3OR16-9A0A0B4J2B5 98 aa12.57□□□□□ -0.4
USP39-201ENST00000323701 LYSTQ99698 3801 aa12.57□□□□□ -0.4
USP39-201ENST00000323701 A0A1B0GWB2 263 aa12.57□□□□□ -0.4
USP39-201ENST00000323701 ANGP03950 147 aaKnown RBP12.57□□□□□ -0.4
USP39-201ENST00000323701 ESRGQ1W209 222 aa12.57□□□□□ -0.4
USP39-201ENST00000323701 SPANXB1Q9NS25 103 aaPredicted RBP12.57□□□□□ -0.4
USP39-201ENST00000323701 WFDC10BQ8IUB3 73 aa12.56□□□□□ -0.4
USP39-201ENST00000323701 NDUFA12Q9UI09 145 aa12.56□□□□□ -0.4
USP39-201ENST00000323701 CSMD3Q7Z407 3707 aa12.56□□□□□ -0.4
USP39-201ENST00000323701 A0A0J9YXY3 114 aa12.55□□□□□ -0.4
USP39-201ENST00000323701 GAGE12HA6NDE8 117 aa12.55□□□□□ -0.4
USP39-201ENST00000323701 XCL1P47992 114 aa12.55□□□□□ -0.4
USP39-201ENST00000323701 ZFAND6Q6FIF0 208 aa12.54□□□□□ -0.4
USP39-201ENST00000323701 C5orf38Q86SI9 138 aa12.54□□□□□ -0.4
USP39-201ENST00000323701 IGLV10-54A0A075B6I4 117 aa12.54□□□□□ -0.4
USP39-201ENST00000323701 WFDC2Q14508 124 aa12.54□□□□□ -0.4
USP39-201ENST00000323701 REG3AQ06141 175 aa12.53□□□□□ -0.4
USP39-201ENST00000323701 IGHV3-30P01768 117 aa12.53□□□□□ -0.4
USP39-201ENST00000323701 IGHV3-33P01772 117 aa12.53□□□□□ -0.4
USP39-201ENST00000323701 IGHV3-30-5P0DP03 117 aa12.53□□□□□ -0.4
USP39-201ENST00000323701 LITAFQ99732 161 aa12.53□□□□□ -0.4
USP39-201ENST00000323701 B9D2Q9BPU9 175 aa12.53□□□□□ -0.4
USP39-201ENST00000323701 TRAV10A0A0B4J240 114 aa12.52□□□□□ -0.41
USP39-201ENST00000323701 A0A1B0GV72 72 aa12.52□□□□□ -0.41
USP39-201ENST00000323701 KLK12Q9UKR0 248 aa12.52□□□□□ -0.41
USP39-201ENST00000323701 SRSF9Q13242 221 aaKnown RBP eCLIP12.51□□□□□ -0.41
USP39-201ENST00000323701 ADAMTSL4-AS1Q5T5F5 129 aa12.51□□□□□ -0.41
USP39-201ENST00000323701 TENM2Q9NT68 2774 aa12.51□□□□□ -0.41
USP39-201ENST00000323701 A0A087WZ39 114 aa12.5□□□□□ -0.41
USP39-201ENST00000323701 SS18Q15532 418 aa12.5□□□□□ -0.41
USP39-201ENST00000323701 ZNF625Q96I27 306 aaPredicted RBP12.5□□□□□ -0.41
USP39-201ENST00000323701 Q9H8V8 135 aa12.5□□□□□ -0.41
USP39-201ENST00000323701 H3BMG7 143 aa12.49□□□□□ -0.41
USP39-201ENST00000323701 NDUFA1O15239 70 aa12.49□□□□□ -0.41
USP39-201ENST00000323701 ENHOQ6UWT2 76 aa12.49□□□□□ -0.41
USP39-201ENST00000323701 CHCHD10Q8WYQ3 142 aaPredicted RBP12.49□□□□□ -0.41
USP39-201ENST00000323701 DYNC2H1Q8NCM8 4307 aaKnown RBP12.49□□□□□ -0.41
USP39-201ENST00000323701 ETDBQ3ZM63 59 aa12.48□□□□□ -0.41
USP39-201ENST00000323701 PRR34Q9NV39 138 aa12.48□□□□□ -0.41
USP39-201ENST00000323701 PGPEP1Q9NXJ5 209 aa12.48□□□□□ -0.41
USP39-201ENST00000323701 PRO0461Q9UI25 63 aa12.47□□□□□ -0.41
USP39-201ENST00000323701 TOMM7Q9P0U1 55 aa12.47□□□□□ -0.41
USP39-201ENST00000323701 EIF4EBP3O60516 100 aaPredicted RBP12.46□□□□□ -0.41
USP39-201ENST00000323701 MTURNQ8N3F0 131 aa12.46□□□□□ -0.41
USP39-201ENST00000323701 DAND5Q8N907 189 aa12.46□□□□□ -0.41
USP39-201ENST00000323701 CD164L2Q6UWJ8 174 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms