RNA–Protein interactions for RNA: ENST00000306177.9

USP42-201, Transcript of ubiquitin specific peptidase 42, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP42, Length 5,155 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-201ENST00000306177 PRM2P04554 102 aa11.67□□□□□ -0.54
USP42-201ENST00000306177 A0A0C4DFX4 3053 aa11.67□□□□□ -0.54
USP42-201ENST00000306177 CPAMD8Q8IZJ3 1885 aa11.67□□□□□ -0.54
USP42-201ENST00000306177 LELP1Q5T871 98 aa11.67□□□□□ -0.54
USP42-201ENST00000306177 MRGPRG-AS1Q2M3A8 158 aa11.66□□□□□ -0.54
USP42-201ENST00000306177 KPRPQ5T749 579 aaPredicted RBP11.66□□□□□ -0.54
USP42-201ENST00000306177 SETD2Q9BYW2 2564 aaPredicted RBP11.66□□□□□ -0.54
USP42-201ENST00000306177 NDUFA7O95182 113 aa11.65□□□□□ -0.54
USP42-201ENST00000306177 UPK3BQ9BT76 320 aa11.65□□□□□ -0.54
USP42-201ENST00000306177 LINC00959A0A1B0GUT2 108 aa11.65□□□□□ -0.54
USP42-201ENST00000306177 SLPIP03973 132 aa11.65□□□□□ -0.54
USP42-201ENST00000306177 A0A087WZ39 114 aa11.64□□□□□ -0.55
USP42-201ENST00000306177 C6orf99Q4VX62 202 aa11.64□□□□□ -0.55
USP42-201ENST00000306177 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.64□□□□□ -0.55
USP42-201ENST00000306177 UBE2D1P51668 147 aa11.64□□□□□ -0.55
USP42-201ENST00000306177 C2orf91Q6ZV80 131 aa11.64□□□□□ -0.55
USP42-201ENST00000306177 BRK1Q8WUW1 75 aa11.64□□□□□ -0.55
USP42-201ENST00000306177 UBE2D3P61077 147 aa11.64□□□□□ -0.55
USP42-201ENST00000306177 UBE2D2P62837 147 aa11.64□□□□□ -0.55
USP42-201ENST00000306177 FAM19A5Q7Z5A7 132 aaPredicted RBP11.64□□□□□ -0.55
USP42-201ENST00000306177 EDN2P20800 178 aa11.63□□□□□ -0.55
USP42-201ENST00000306177 ODF3L2Q3SX64 289 aa11.63□□□□□ -0.55
USP42-201ENST00000306177 TRAV23DV6A0A075B6W5 121 aa11.62□□□□□ -0.55
USP42-201ENST00000306177 CLUHP3Q96NS8 147 aa11.61□□□□□ -0.55
USP42-201ENST00000306177 VCANP13611 3396 aa11.61□□□□□ -0.55
USP42-201ENST00000306177 EXPH5Q8NEV8 1989 aa11.61□□□□□ -0.55
USP42-201ENST00000306177 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.61□□□□□ -0.55
USP42-201ENST00000306177 BRI3O95415 125 aa11.61□□□□□ -0.55
USP42-201ENST00000306177 MRPL55Q7Z7F7 128 aaKnown RBP11.61□□□□□ -0.55
USP42-201ENST00000306177 SMR3AQ99954 134 aa11.61□□□□□ -0.55
USP42-201ENST00000306177 PRUNE2Q8WUY3 3088 aa11.61□□□□□ -0.55
USP42-201ENST00000306177 ATP5EP2Q5VTU8 51 aa11.6□□□□□ -0.55
USP42-201ENST00000306177 CDC42SE2Q9NRR3 84 aa11.6□□□□□ -0.55
USP42-201ENST00000306177 FN1P02751 2386 aaKnown RBP11.59□□□□□ -0.55
USP42-201ENST00000306177 RAI1Q7Z5J4 1906 aaPredicted RBP11.59□□□□□ -0.55
USP42-201ENST00000306177 A0A096LNI7 61 aa11.59□□□□□ -0.55
USP42-201ENST00000306177 IGIPA6NJ69 53 aa11.59□□□□□ -0.55
USP42-201ENST00000306177 MT-ATP8P03928 68 aa11.59□□□□□ -0.55
USP42-201ENST00000306177 SDIM1Q6ZPB5 146 aa11.59□□□□□ -0.55
USP42-201ENST00000306177 SPTSSBQ8NFR3 76 aa11.59□□□□□ -0.55
USP42-201ENST00000306177 ZNF580Q9UK33 172 aa11.59□□□□□ -0.55
USP42-201ENST00000306177 IGLV4-69A0A075B6H9 119 aa11.58□□□□□ -0.56
USP42-201ENST00000306177 LINC00526Q96FQ7 95 aa11.58□□□□□ -0.56
USP42-201ENST00000306177 IGHV4-30-4P0DP06 118 aa11.57□□□□□ -0.56
USP42-201ENST00000306177 M0R378 163 aa11.57□□□□□ -0.56
USP42-201ENST00000306177 LINC00310P59036 64 aa11.57□□□□□ -0.56
USP42-201ENST00000306177 COX17Q14061 63 aa11.57□□□□□ -0.56
USP42-201ENST00000306177 IGLV1-51P01701 117 aa11.56□□□□□ -0.56
USP42-201ENST00000306177 SEC61GP60059 68 aa11.56□□□□□ -0.56
USP42-201ENST00000306177 Q8IZM0 81 aa11.56□□□□□ -0.56
USP42-201ENST00000306177 NDUFV3P56181 108 aaKnown RBP11.56□□□□□ -0.56
USP42-201ENST00000306177 IGKV2-28A0A075B6P5 120 aa11.56□□□□□ -0.56
USP42-201ENST00000306177 LST1O00453 97 aa11.56□□□□□ -0.56
USP42-201ENST00000306177 IGKV2D-28P01615 120 aa11.56□□□□□ -0.56
USP42-201ENST00000306177 OXLD1Q5BKU9 147 aa11.56□□□□□ -0.56
USP42-201ENST00000306177 COX8CQ7Z4L0 72 aa11.56□□□□□ -0.56
USP42-201ENST00000306177 URB1-AS1Q96HZ7 61 aa11.56□□□□□ -0.56
USP42-201ENST00000306177 LRRK2Q5S007 2527 aa11.55□□□□□ -0.56
USP42-201ENST00000306177 ZNF462Q96JM2 2506 aa11.54□□□□□ -0.56
USP42-201ENST00000306177 MUC7Q8TAX7 377 aa11.54□□□□□ -0.56
USP42-201ENST00000306177 CCKP06307 115 aa11.54□□□□□ -0.56
USP42-201ENST00000306177 ENHOQ6UWT2 76 aa11.54□□□□□ -0.56
USP42-201ENST00000306177 POM121L12Q8N7R1 296 aa11.54□□□□□ -0.56
USP42-201ENST00000306177 Q6ZQY7 126 aa11.54□□□□□ -0.56
USP42-201ENST00000306177 EML5Q05BV3 1969 aa11.53□□□□□ -0.56
USP42-201ENST00000306177 IGLV2-18A0A075B6J9 118 aa11.53□□□□□ -0.56
USP42-201ENST00000306177 LINC00242Q5T6M2 205 aa11.53□□□□□ -0.56
USP42-201ENST00000306177 SCXQ7RTU7 201 aa11.53□□□□□ -0.56
USP42-201ENST00000306177 DHRS4-AS1Q9P1J3 65 aa11.53□□□□□ -0.56
USP42-201ENST00000306177 SMIM11BQ8TCY0 68 aa11.53□□□□□ -0.56
USP42-201ENST00000306177 A0A0J9YWU9 116 aa11.53□□□□□ -0.56
USP42-201ENST00000306177 IGKV4-1P06312 121 aa11.53□□□□□ -0.56
USP42-201ENST00000306177 NANOS2P60321 138 aaKnown RBP11.53□□□□□ -0.56
USP42-201ENST00000306177 LRCOL1A6NCL2 159 aa11.52□□□□□ -0.57
USP42-201ENST00000306177 C1orf158Q8N1D5 194 aa11.52□□□□□ -0.57
USP42-201ENST00000306177 LOC107984640A0A0U1RRK4 108 aa11.52□□□□□ -0.57
USP42-201ENST00000306177 C16orf95Q9H693 158 aa11.52□□□□□ -0.57
USP42-201ENST00000306177 DNAH14Q0VDD8 3507 aa11.51□□□□□ -0.57
USP42-201ENST00000306177 UQCRQO14949 82 aa11.51□□□□□ -0.57
USP42-201ENST00000306177 ADAMTS20P59510 1910 aa11.5□□□□□ -0.57
USP42-201ENST00000306177 C7orf33Q8WU49 177 aa11.5□□□□□ -0.57
USP42-201ENST00000306177 C20orf197Q8N268 126 aa11.5□□□□□ -0.57
USP42-201ENST00000306177 CHCHD7Q9BUK0 85 aa11.5□□□□□ -0.57
USP42-201ENST00000306177 CYSRT1A8MQ03 144 aa11.49□□□□□ -0.57
USP42-201ENST00000306177 ZNF73O43830 326 aaPredicted RBP11.49□□□□□ -0.57
USP42-201ENST00000306177 COL4A2P08572 1712 aa11.48□□□□□ -0.57
USP42-201ENST00000306177 SMIM1B2RUZ4 78 aa11.47□□□□□ -0.57
USP42-201ENST00000306177 C3orf84H3BNL1 204 aa11.47□□□□□ -0.57
USP42-201ENST00000306177 MTORP42345 2549 aa11.47□□□□□ -0.57
USP42-201ENST00000306177 M0R2N4 97 aa11.47□□□□□ -0.57
USP42-201ENST00000306177 FASNP49327 2511 aaKnown RBP11.46□□□□□ -0.58
USP42-201ENST00000306177 ZNF706Q9Y5V0 76 aaPredicted RBP11.46□□□□□ -0.58
USP42-201ENST00000306177 FHL2Q14192 279 aa11.45□□□□□ -0.58
USP42-201ENST00000306177 RPL37AP8A6NKH3 93 aa11.45□□□□□ -0.58
USP42-201ENST00000306177 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP11.44□□□□□ -0.58
USP42-201ENST00000306177 FAM240AA0A1B0GVK7 77 aa11.44□□□□□ -0.58
USP42-201ENST00000306177 PPDPFQ9H3Y8 114 aa11.44□□□□□ -0.58
USP42-201ENST00000306177 SZT2Q5T011 3432 aa11.44□□□□□ -0.58
USP42-201ENST00000306177 BEAN1Q3B7T3 259 aa11.44□□□□□ -0.58
USP42-201ENST00000306177 CSDC2Q9Y534 153 aaKnown RBP11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 73.2 ms