RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 ARHGAP21Q5T5U3 1957 aa9.33□□□□□ -0.92
USP40-201ENST00000251722 C10orf99Q6UWK7 81 aa9.33□□□□□ -0.92
USP40-201ENST00000251722 TRBV10-3A0A0K0K1G6 114 aa9.33□□□□□ -0.92
USP40-201ENST00000251722 LINC00308Q8TCZ7 52 aa9.33□□□□□ -0.92
USP40-201ENST00000251722 ACACBO00763 2458 aa9.33□□□□□ -0.92
USP40-201ENST00000251722 CDKN2A-AS1Q9UH64 79 aa9.32□□□□□ -0.92
USP40-201ENST00000251722 PRO0461Q9UI25 63 aa9.32□□□□□ -0.92
USP40-201ENST00000251722 MED12LQ86YW9 2145 aa9.32□□□□□ -0.92
USP40-201ENST00000251722 H0Y9J4 135 aa9.31□□□□□ -0.92
USP40-201ENST00000251722 IGLV2-11P01706 119 aa9.31□□□□□ -0.92
USP40-201ENST00000251722 A0A087WVE0 104 aa9.31□□□□□ -0.92
USP40-201ENST00000251722 CEMP1Q6PRD7 247 aaPredicted RBP9.31□□□□□ -0.92
USP40-201ENST00000251722 NACAE9PAV3 2078 aa9.31□□□□□ -0.92
USP40-201ENST00000251722 RNASE3P12724 160 aaKnown RBP9.31□□□□□ -0.92
USP40-201ENST00000251722 CNFNQ9BYD5 112 aa9.31□□□□□ -0.92
USP40-201ENST00000251722 SHANK1Q9Y566 2161 aa9.3□□□□□ -0.92
USP40-201ENST00000251722 BEAN1Q3B7T3 259 aa9.3□□□□□ -0.92
USP40-201ENST00000251722 RNF185Q96GF1 192 aa9.3□□□□□ -0.92
USP40-201ENST00000251722 NANOS2P60321 138 aaKnown RBP9.3□□□□□ -0.92
USP40-201ENST00000251722 Q8IZM0 81 aa9.3□□□□□ -0.92
USP40-201ENST00000251722 LY6G6CO95867 125 aa9.3□□□□□ -0.92
USP40-201ENST00000251722 CDSNQ15517 529 aa9.3□□□□□ -0.92
USP40-201ENST00000251722 A0A0J9YWU9 116 aa9.29□□□□□ -0.92
USP40-201ENST00000251722 LINC00959A0A1B0GUT2 108 aa9.29□□□□□ -0.92
USP40-201ENST00000251722 AVPP01185 164 aa9.29□□□□□ -0.92
USP40-201ENST00000251722 TSHBP01222 138 aa9.29□□□□□ -0.92
USP40-201ENST00000251722 CRIP1P50238 77 aa9.29□□□□□ -0.92
USP40-201ENST00000251722 URB1-AS1Q96HZ7 61 aa9.29□□□□□ -0.92
USP40-201ENST00000251722 WFDC10AQ9H1F0 79 aa9.28□□□□□ -0.92
USP40-201ENST00000251722 POLR2KP53803 58 aaKnown RBP9.27□□□□□ -0.92
USP40-201ENST00000251722 TMEM254Q8TBM7 123 aa9.27□□□□□ -0.92
USP40-201ENST00000251722 UBE2D4Q9Y2X8 147 aa9.27□□□□□ -0.92
USP40-201ENST00000251722 KRTAP10-9P60411 292 aa9.27□□□□□ -0.93
USP40-201ENST00000251722 ODF3L2Q3SX64 289 aa9.27□□□□□ -0.93
USP40-201ENST00000251722 NCOA6Q14686 2063 aaPredicted RBP9.27□□□□□ -0.93
USP40-201ENST00000251722 SBSPONQ8IVN8 264 aa9.27□□□□□ -0.93
USP40-201ENST00000251722 FREM1Q5H8C1 2179 aa9.27□□□□□ -0.93
USP40-201ENST00000251722 Q8N2B8 174 aa9.26□□□□□ -0.93
USP40-201ENST00000251722 C18orf65Q6ZTR6 163 aa9.26□□□□□ -0.93
USP40-201ENST00000251722 CELA1Q9UNI1 258 aa9.26□□□□□ -0.93
USP40-201ENST00000251722 EGFEM1PQ0D2K5 195 aa9.26□□□□□ -0.93
USP40-201ENST00000251722 LINC00336Q6ZUF6 198 aa9.25□□□□□ -0.93
USP40-201ENST00000251722 SCXQ7RTU7 201 aa9.25□□□□□ -0.93
USP40-201ENST00000251722 LINC01561Q8N1V8 128 aa9.25□□□□□ -0.93
USP40-201ENST00000251722 SMCPP49901 116 aaPredicted RBP9.25□□□□□ -0.93
USP40-201ENST00000251722 CUL9Q8IWT3 2517 aa9.24□□□□□ -0.93
USP40-201ENST00000251722 LRCOL1A6NCL2 159 aa9.24□□□□□ -0.93
USP40-201ENST00000251722 Q6ZS46 218 aa9.24□□□□□ -0.93
USP40-201ENST00000251722 COX8CQ7Z4L0 72 aa9.24□□□□□ -0.93
USP40-201ENST00000251722 FAM19A4Q96LR4 140 aa9.24□□□□□ -0.93
USP40-201ENST00000251722 RPL28P46779 137 aaKnown RBP9.24□□□□□ -0.93
USP40-201ENST00000251722 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.24□□□□□ -0.93
USP40-201ENST00000251722 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.22□□□□□ -0.93
USP40-201ENST00000251722 CDC42SE2Q9NRR3 84 aa9.22□□□□□ -0.93
USP40-201ENST00000251722 TNRC6BQ9UPQ9 1833 aaKnown RBP9.22□□□□□ -0.93
USP40-201ENST00000251722 ADAMTS20P59510 1910 aa9.22□□□□□ -0.93
USP40-201ENST00000251722 SLPIP03973 132 aa9.21□□□□□ -0.94
USP40-201ENST00000251722 PLCE1Q9P212 2302 aa9.21□□□□□ -0.94
USP40-201ENST00000251722 IGLV2-18A0A075B6J9 118 aa9.21□□□□□ -0.94
USP40-201ENST00000251722 PRR9Q5T870 116 aa9.21□□□□□ -0.94
USP40-201ENST00000251722 PRR4Q16378 134 aa9.2□□□□□ -0.94
USP40-201ENST00000251722 MED13LQ71F56 2210 aa9.19□□□□□ -0.94
USP40-201ENST00000251722 KTN1-AS1Q86SY8 53 aa9.19□□□□□ -0.94
USP40-201ENST00000251722 Q8N3U1 123 aa9.19□□□□□ -0.94
USP40-201ENST00000251722 C2orf48Q96LS8 159 aa9.19□□□□□ -0.94
USP40-201ENST00000251722 IGKV4-1P06312 121 aa9.19□□□□□ -0.94
USP40-201ENST00000251722 PROK1P58294 105 aa9.19□□□□□ -0.94
USP40-201ENST00000251722 SMR3AQ99954 134 aa9.19□□□□□ -0.94
USP40-201ENST00000251722 FSHBP01225 129 aa9.19□□□□□ -0.94
USP40-201ENST00000251722 NOTCH3Q9UM47 2321 aa9.18□□□□□ -0.94
USP40-201ENST00000251722 XAGE1AQ9HD64 81 aa9.18□□□□□ -0.94
USP40-201ENST00000251722 C6orf99Q4VX62 202 aa9.18□□□□□ -0.94
USP40-201ENST00000251722 C11orf21Q9P2W6 132 aa9.18□□□□□ -0.94
USP40-201ENST00000251722 Q8N9L7 120 aa9.17□□□□□ -0.94
USP40-201ENST00000251722 A0A1B0GUV1 79 aa9.17□□□□□ -0.94
USP40-201ENST00000251722 M0R2N4 97 aa9.17□□□□□ -0.94
USP40-201ENST00000251722 C1orf134Q5TEV5 83 aa9.17□□□□□ -0.94
USP40-201ENST00000251722 A0A1W2PPR1 153 aa9.16□□□□□ -0.94
USP40-201ENST00000251722 ZNF73O43830 326 aaPredicted RBP9.16□□□□□ -0.94
USP40-201ENST00000251722 IGLV5-52A0A0A0MRZ9 124 aa9.16□□□□□ -0.94
USP40-201ENST00000251722 BDP1A6H8Y1 2624 aa9.15□□□□□ -0.94
USP40-201ENST00000251722 FHL2Q14192 279 aa9.15□□□□□ -0.94
USP40-201ENST00000251722 LOC100131303A0A0U1RQF7 123 aa9.15□□□□□ -0.94
USP40-201ENST00000251722 C1orf158Q8N1D5 194 aa9.15□□□□□ -0.94
USP40-201ENST00000251722 NAV3Q8IVL0 2385 aa9.14□□□□□ -0.95
USP40-201ENST00000251722 LCA10Q71F78 164 aa9.14□□□□□ -0.95
USP40-201ENST00000251722 LINC00846Q9NV44 126 aa9.14□□□□□ -0.95
USP40-201ENST00000251722 FHL3Q13643 280 aa9.14□□□□□ -0.95
USP40-201ENST00000251722 FAM30AQ9NZY2 134 aa9.14□□□□□ -0.95
USP40-201ENST00000251722 PIEZO1Q92508 2521 aa9.14□□□□□ -0.95
USP40-201ENST00000251722 PCNX3Q9H6A9 2034 aa9.14□□□□□ -0.95
USP40-201ENST00000251722 NTM-AS1Q6ZSK4 140 aa9.14□□□□□ -0.95
USP40-201ENST00000251722 CYSRT1A8MQ03 144 aa9.13□□□□□ -0.95
USP40-201ENST00000251722 C8orf87E5RJ46 101 aa9.13□□□□□ -0.95
USP40-201ENST00000251722 PRM2P04554 102 aa9.13□□□□□ -0.95
USP40-201ENST00000251722 hDV103S1A0JD37 113 aa9.13□□□□□ -0.95
USP40-201ENST00000251722 C10orf25Q5T742 122 aa9.13□□□□□ -0.95
USP40-201ENST00000251722 SMIM11BQ8TCY0 68 aa9.13□□□□□ -0.95
USP40-201ENST00000251722 IGIPA6NJ69 53 aa9.12□□□□□ -0.95
USP40-201ENST00000251722 Q6ZVQ6 151 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms