RNA–Protein interactions for RNA: ENST00000230085.12

SNX3-201, Transcript of sorting nexin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX3, Length 1,755 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3-201ENST00000230085 BEAN1Q3B7T3 259 aa14.8□□□□□ -0.04
SNX3-201ENST00000230085 IGLV5-39A0A0G2JS06 123 aa14.79□□□□□ -0.04
SNX3-201ENST00000230085 IGHV3-53P01767 116 aa14.79□□□□□ -0.04
SNX3-201ENST00000230085 IMUPQ9GZP8 106 aa14.79□□□□□ -0.04
SNX3-201ENST00000230085 HOXD3P31249 432 aaPredicted RBP14.78□□□□□ -0.04
SNX3-201ENST00000230085 ZNF415Q09FC8 603 aa14.78□□□□□ -0.04
SNX3-201ENST00000230085 IGKV3-20P01619 116 aa14.77□□□□□ -0.05
SNX3-201ENST00000230085 LINC00482Q8N8I6 264 aa14.77□□□□□ -0.05
SNX3-201ENST00000230085 CIRBPQ14011 172 aaKnown RBP14.76□□□□□ -0.05
SNX3-201ENST00000230085 NOTCH3Q9UM47 2321 aa14.76□□□□□ -0.05
SNX3-201ENST00000230085 B5MCH6 92 aa14.75□□□□□ -0.05
SNX3-201ENST00000230085 SYNJ2BPP57105 145 aa14.74□□□□□ -0.05
SNX3-201ENST00000230085 CSDC2Q9Y534 153 aaKnown RBP14.74□□□□□ -0.05
SNX3-201ENST00000230085 CEMP1Q6PRD7 247 aaPredicted RBP14.73□□□□□ -0.05
SNX3-201ENST00000230085 SDIM1Q6ZPB5 146 aa14.73□□□□□ -0.05
SNX3-201ENST00000230085 COX7A2LO14548 114 aa14.73□□□□□ -0.05
SNX3-201ENST00000230085 RS1O15537 224 aa14.73□□□□□ -0.05
SNX3-201ENST00000230085 HERVK_113P63121 156 aa14.73□□□□□ -0.05
SNX3-201ENST00000230085 WFDC9Q8NEX5 89 aa14.73□□□□□ -0.05
SNX3-201ENST00000230085 C11orf72Q8NBR9 251 aa14.72□□□□□ -0.05
SNX3-201ENST00000230085 CLEC2BQ92478 149 aa14.72□□□□□ -0.05
SNX3-201ENST00000230085 TMEM101Q96IK0 257 aa14.72□□□□□ -0.05
SNX3-201ENST00000230085 TRACP01848 142 aa14.71□□□□□ -0.05
SNX3-201ENST00000230085 LINC00308Q8TCZ7 52 aa14.71□□□□□ -0.05
SNX3-201ENST00000230085 CDKN2A-AS1Q9UH64 79 aa14.71□□□□□ -0.05
SNX3-201ENST00000230085 SS18L2Q9UHA2 77 aa14.71□□□□□ -0.05
SNX3-201ENST00000230085 CCDC179H3BU77 68 aa14.7□□□□□ -0.06
SNX3-201ENST00000230085 FAM222AQ5U5X8 452 aa14.7□□□□□ -0.06
SNX3-201ENST00000230085 Q6ZSN1 163 aa14.7□□□□□ -0.06
SNX3-201ENST00000230085 RBMY1BA6NDE4 496 aaKnown RBP14.68□□□□□ -0.06
SNX3-201ENST00000230085 RBMY1EA6NEQ0 496 aaKnown RBP14.68□□□□□ -0.06
SNX3-201ENST00000230085 RBMY1DP0C7P1 496 aaKnown RBP14.68□□□□□ -0.06
SNX3-201ENST00000230085 IGKV2D-29A0A075B6S2 120 aaPredicted RBP14.67□□□□□ -0.06
SNX3-201ENST00000230085 IGKV2-29A2NJV5 120 aaPredicted RBP14.67□□□□□ -0.06
SNX3-201ENST00000230085 HERV-K104P63124 156 aa14.67□□□□□ -0.06
SNX3-201ENST00000230085 MGAM2Q2M2H8 2515 aa14.66□□□□□ -0.06
SNX3-201ENST00000230085 IGHV3OR16-12A0A075B7B8 117 aa14.66□□□□□ -0.06
SNX3-201ENST00000230085 A8MZ25 164 aa14.66□□□□□ -0.06
SNX3-201ENST00000230085 IGHV3-73A0A0B4J1V6 119 aa14.65□□□□□ -0.06
SNX3-201ENST00000230085 OXLD1Q5BKU9 147 aa14.65□□□□□ -0.06
SNX3-201ENST00000230085 RNASE13Q5GAN3 156 aaKnown RBP14.65□□□□□ -0.06
SNX3-201ENST00000230085 ZNF625Q96I27 306 aaPredicted RBP14.65□□□□□ -0.06
SNX3-201ENST00000230085 KNCNA6PVL3 124 aa14.65□□□□□ -0.06
SNX3-201ENST00000230085 DEFB131AP59861 70 aa14.65□□□□□ -0.06
SNX3-201ENST00000230085 LINC00242Q5T6M2 205 aa14.65□□□□□ -0.06
SNX3-201ENST00000230085 FAM110AQ9BQ89 295 aa14.65□□□□□ -0.06
SNX3-201ENST00000230085 PEMTQ9UBM1 199 aa14.65□□□□□ -0.06
SNX3-201ENST00000230085 TRBV10-1A0A0K0K1A3 114 aa14.64□□□□□ -0.07
SNX3-201ENST00000230085 ATP5G1P05496 136 aa14.64□□□□□ -0.07
SNX3-201ENST00000230085 DAND5Q8N907 189 aa14.64□□□□□ -0.07
SNX3-201ENST00000230085 IL17DQ8TAD2 202 aa14.64□□□□□ -0.07
SNX3-201ENST00000230085 Q9UF83 564 aa14.64□□□□□ -0.07
SNX3-201ENST00000230085 LINC00643Q86TS7 51 aa14.63□□□□□ -0.07
SNX3-201ENST00000230085 SMIM1B2RUZ4 78 aa14.62□□□□□ -0.07
SNX3-201ENST00000230085 TMEM126AQ9H061 195 aa14.62□□□□□ -0.07
SNX3-201ENST00000230085 Q9H8V8 135 aa14.62□□□□□ -0.07
SNX3-201ENST00000230085 INSP01308 110 aa14.62□□□□□ -0.07
SNX3-201ENST00000230085 CXCL5P42830 114 aa14.6□□□□□ -0.07
SNX3-201ENST00000230085 COX6A2Q02221 97 aa14.6□□□□□ -0.07
SNX3-201ENST00000230085 C9orf66Q5T8R8 295 aa14.6□□□□□ -0.07
SNX3-201ENST00000230085 DGAT2L7PQ6IED9 249 aa14.6□□□□□ -0.07
SNX3-201ENST00000230085 F5H768 121 aa14.6□□□□□ -0.07
SNX3-201ENST00000230085 NPC2P61916 151 aa14.59□□□□□ -0.07
SNX3-201ENST00000230085 DAZ2Q13117 558 aaKnown RBP14.59□□□□□ -0.07
SNX3-201ENST00000230085 SOSTDC1Q6X4U4 206 aa14.59□□□□□ -0.07
SNX3-201ENST00000230085 DAZ4Q86SG3 579 aaKnown RBP14.59□□□□□ -0.07
SNX3-201ENST00000230085 MAP6D1Q9H9H5 199 aa14.59□□□□□ -0.07
SNX3-201ENST00000230085 DAZ3Q9NR90 486 aaKnown RBP14.59□□□□□ -0.07
SNX3-201ENST00000230085 OVOL2Q9BRP0 275 aa14.57□□□□□ -0.08
SNX3-201ENST00000230085 INAFM2P0DMQ5 153 aa14.57□□□□□ -0.08
SNX3-201ENST00000230085 LINC01587Q99440 93 aa14.57□□□□□ -0.08
SNX3-201ENST00000230085 IGLV1-51P01701 117 aa14.56□□□□□ -0.08
SNX3-201ENST00000230085 RPL28P46779 137 aaKnown RBP14.56□□□□□ -0.08
SNX3-201ENST00000230085 NOTCH1P46531 2555 aa14.55□□□□□ -0.08
SNX3-201ENST00000230085 WIPF1O43516 503 aa14.55□□□□□ -0.08
SNX3-201ENST00000230085 HTN1P15515 57 aa14.55□□□□□ -0.08
SNX3-201ENST00000230085 DEFB114Q30KQ6 69 aa14.55□□□□□ -0.08
SNX3-201ENST00000230085 MEIG1Q5JSS6 88 aa14.55□□□□□ -0.08
SNX3-201ENST00000230085 DYNLRB2Q8TF09 96 aa14.55□□□□□ -0.08
SNX3-201ENST00000230085 C22orf24Q9Y442 160 aa14.55□□□□□ -0.08
SNX3-201ENST00000230085 SORL1Q92673 2214 aa14.55□□□□□ -0.08
SNX3-201ENST00000230085 NBEAL1Q6ZS30 2694 aa14.54□□□□□ -0.08
SNX3-201ENST00000230085 TRAV13-2A0A0B4J235 113 aa14.54□□□□□ -0.08
SNX3-201ENST00000230085 IGHV3-38A0A0C4DH36 116 aa14.54□□□□□ -0.08
SNX3-201ENST00000230085 C5orf38Q86SI9 138 aa14.54□□□□□ -0.08
SNX3-201ENST00000230085 CDC42SE2Q9NRR3 84 aa14.54□□□□□ -0.08
SNX3-201ENST00000230085 TRAV25A0A0B4J276 109 aa14.52□□□□□ -0.08
SNX3-201ENST00000230085 RPL36AP83881 106 aaKnown RBP14.52□□□□□ -0.08
SNX3-201ENST00000230085 RPL36ALQ969Q0 106 aaKnown RBP14.52□□□□□ -0.08
SNX3-201ENST00000230085 KRTAP10-11P60412 298 aa14.52□□□□□ -0.09
SNX3-201ENST00000230085 BAALC-AS2P0C853 105 aa14.51□□□□□ -0.09
SNX3-201ENST00000230085 EGFEM1PQ0D2K5 195 aa14.51□□□□□ -0.09
SNX3-201ENST00000230085 SMCR5Q8TEV8 140 aa14.51□□□□□ -0.09
SNX3-201ENST00000230085 K7EQD1 137 aa14.5□□□□□ -0.09
SNX3-201ENST00000230085 LINC00694P0DN24 101 aa14.5□□□□□ -0.09
SNX3-201ENST00000230085 NTM-AS1Q6ZSK4 140 aa14.5□□□□□ -0.09
SNX3-201ENST00000230085 CHCHD5Q9BSY4 110 aa14.5□□□□□ -0.09
SNX3-201ENST00000230085 DNAH3Q8TD57 4116 aa14.49□□□□□ -0.09
SNX3-201ENST00000230085 PRM2P04554 102 aa14.49□□□□□ -0.09
SNX3-201ENST00000230085 FAM236AA0A1B0GUQ0 79 aa14.48□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms