RNA–Protein interactions for RNA: ENST00000162749.6

TNFRSF1A-201, Transcript of TNF receptor superfamily member 1A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TNFRSF1A, Length 2,223 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-201ENST00000162749 A0A096LPF7 62 aa13.7□□□□□ -0.22
TNFRSF1A-201ENST00000162749 J3QQQ9 107 aa13.68□□□□□ -0.22
TNFRSF1A-201ENST00000162749 UBE2L6O14933 153 aa13.68□□□□□ -0.22
TNFRSF1A-201ENST00000162749 OR5A1Q8NGJ0 315 aa13.68□□□□□ -0.22
TNFRSF1A-201ENST00000162749 H7C423 109 aa13.67□□□□□ -0.22
TNFRSF1A-201ENST00000162749 Q6ZTC4 211 aa13.67□□□□□ -0.22
TNFRSF1A-201ENST00000162749 SRSF9Q13242 221 aaKnown RBP eCLIP13.67□□□□□ -0.22
TNFRSF1A-201ENST00000162749 LEPROTO15243 131 aa13.66□□□□□ -0.22
TNFRSF1A-201ENST00000162749 DNAH9Q9NYC9 4486 aa13.66□□□□□ -0.22
TNFRSF1A-201ENST00000162749 SMAGPQ0VAQ4 97 aa13.66□□□□□ -0.22
TNFRSF1A-201ENST00000162749 IGHV3-64A0A075B6Q5 118 aa13.65□□□□□ -0.22
TNFRSF1A-201ENST00000162749 CHCHD5Q9BSY4 110 aa13.65□□□□□ -0.22
TNFRSF1A-201ENST00000162749 CDC42SE2Q9NRR3 84 aa13.65□□□□□ -0.22
TNFRSF1A-201ENST00000162749 LGALS3P17931 250 aaKnown RBP13.64□□□□□ -0.23
TNFRSF1A-201ENST00000162749 GAGE6Q13070 117 aa13.64□□□□□ -0.23
TNFRSF1A-201ENST00000162749 MRPL23Q16540 153 aaKnown RBP13.64□□□□□ -0.23
TNFRSF1A-201ENST00000162749 SPANXB1Q9NS25 103 aaPredicted RBP13.64□□□□□ -0.23
TNFRSF1A-201ENST00000162749 UBE2D1P51668 147 aa13.63□□□□□ -0.23
TNFRSF1A-201ENST00000162749 C11orf45Q8TAV5 145 aa13.63□□□□□ -0.23
TNFRSF1A-201ENST00000162749 IGHV3-30P01768 117 aa13.62□□□□□ -0.23
TNFRSF1A-201ENST00000162749 IGHV3-30-5P0DP03 117 aa13.62□□□□□ -0.23
TNFRSF1A-201ENST00000162749 NANOS2P60321 138 aaKnown RBP13.62□□□□□ -0.23
TNFRSF1A-201ENST00000162749 TMEM101Q96IK0 257 aa13.62□□□□□ -0.23
TNFRSF1A-201ENST00000162749 ICOSQ9Y6W8 199 aa13.62□□□□□ -0.23
TNFRSF1A-201ENST00000162749 TINCRA0A1B0GVN0 87 aa13.6□□□□□ -0.23
TNFRSF1A-201ENST00000162749 IGLV4-60A0A075B6I1 120 aa13.6□□□□□ -0.23
TNFRSF1A-201ENST00000162749 A6NJY4 79 aa13.6□□□□□ -0.23
TNFRSF1A-201ENST00000162749 IGHV3-30-3P0DP02 117 aa13.59□□□□□ -0.23
TNFRSF1A-201ENST00000162749 C10orf126Q8N4M7 172 aa13.59□□□□□ -0.23
TNFRSF1A-201ENST00000162749 TRAV8-3A0A0A6YYJ7 113 aa13.58□□□□□ -0.24
TNFRSF1A-201ENST00000162749 H3BNG1 76 aa13.58□□□□□ -0.24
TNFRSF1A-201ENST00000162749 SH2D6Q7Z4S9 175 aa13.58□□□□□ -0.24
TNFRSF1A-201ENST00000162749 PGPEP1Q9NXJ5 209 aa13.58□□□□□ -0.24
TNFRSF1A-201ENST00000162749 TRAV13-1A0A0B4J241 112 aa13.57□□□□□ -0.24
TNFRSF1A-201ENST00000162749 LINC00242Q5T6M2 205 aa13.57□□□□□ -0.24
TNFRSF1A-201ENST00000162749 PRKDCP78527 4128 aaKnown RBP13.57□□□□□ -0.24
TNFRSF1A-201ENST00000162749 FAM19A3Q7Z5A8 133 aa13.56□□□□□ -0.24
TNFRSF1A-201ENST00000162749 DEFB131BA0A096LNP1 70 aa13.56□□□□□ -0.24
TNFRSF1A-201ENST00000162749 A0A1B0GUV1 79 aa13.56□□□□□ -0.24
TNFRSF1A-201ENST00000162749 TMEM262E9PQX1 116 aa13.56□□□□□ -0.24
TNFRSF1A-201ENST00000162749 GEMIN7Q9H840 131 aaKnown RBP13.56□□□□□ -0.24
TNFRSF1A-201ENST00000162749 MEGF8Q7Z7M0 2845 aa13.55□□□□□ -0.24
TNFRSF1A-201ENST00000162749 IGHV1-58A0A0C4DH39 117 aa13.55□□□□□ -0.24
TNFRSF1A-201ENST00000162749 APOMO95445 188 aa13.55□□□□□ -0.24
TNFRSF1A-201ENST00000162749 CFC1BP0CG36 223 aa13.55□□□□□ -0.24
TNFRSF1A-201ENST00000162749 CFC1P0CG37 223 aa13.55□□□□□ -0.24
TNFRSF1A-201ENST00000162749 TIRAPP58753 221 aa13.55□□□□□ -0.24
TNFRSF1A-201ENST00000162749 RPL24P83731 157 aaKnown RBP13.55□□□□□ -0.24
TNFRSF1A-201ENST00000162749 COX6A2Q02221 97 aa13.55□□□□□ -0.24
TNFRSF1A-201ENST00000162749 IGLV5-45A0A087WSX0 123 aa13.54□□□□□ -0.24
TNFRSF1A-201ENST00000162749 H3BMG7 143 aa13.54□□□□□ -0.24
TNFRSF1A-201ENST00000162749 TSPAN13O95857 204 aa13.54□□□□□ -0.24
TNFRSF1A-201ENST00000162749 CDKN2A-AS1Q9UH64 79 aa13.54□□□□□ -0.24
TNFRSF1A-201ENST00000162749 A0A0J9YXY3 114 aa13.54□□□□□ -0.24
TNFRSF1A-201ENST00000162749 HERVK_113P63121 156 aa13.54□□□□□ -0.24
TNFRSF1A-201ENST00000162749 LELP1Q5T871 98 aa13.53□□□□□ -0.24
TNFRSF1A-201ENST00000162749 SPINK8P0C7L1 97 aa13.52□□□□□ -0.24
TNFRSF1A-201ENST00000162749 SCGB1A1P11684 91 aa13.52□□□□□ -0.24
TNFRSF1A-201ENST00000162749 LYPD5Q6UWN5 251 aa13.52□□□□□ -0.25
TNFRSF1A-201ENST00000162749 B9D2Q9BPU9 175 aa13.52□□□□□ -0.25
TNFRSF1A-201ENST00000162749 EIF4EBP3O60516 100 aaPredicted RBP13.51□□□□□ -0.25
TNFRSF1A-201ENST00000162749 LITAFQ99732 161 aa13.51□□□□□ -0.25
TNFRSF1A-201ENST00000162749 IGKV3OR2-268A0A0C4DH90 116 aa13.51□□□□□ -0.25
TNFRSF1A-201ENST00000162749 Q8N3U1 123 aa13.51□□□□□ -0.25
TNFRSF1A-201ENST00000162749 A4D1N5 150 aa13.5□□□□□ -0.25
TNFRSF1A-201ENST00000162749 MUSTN1Q8IVN3 82 aa13.5□□□□□ -0.25
TNFRSF1A-201ENST00000162749 WFDC2Q14508 124 aa13.49□□□□□ -0.25
TNFRSF1A-201ENST00000162749 SFTA2Q6UW10 78 aa13.49□□□□□ -0.25
TNFRSF1A-201ENST00000162749 SIGMAR1Q99720 223 aa13.49□□□□□ -0.25
TNFRSF1A-201ENST00000162749 NDUFA12Q9UI09 145 aa13.49□□□□□ -0.25
TNFRSF1A-201ENST00000162749 F8W1H4 67 aa13.48□□□□□ -0.25
TNFRSF1A-201ENST00000162749 KRTAP21-3Q3LHN1 58 aa13.48□□□□□ -0.25
TNFRSF1A-201ENST00000162749 PRO0461Q9UI25 63 aa13.48□□□□□ -0.25
TNFRSF1A-201ENST00000162749 TRAV10A0A0B4J240 114 aa13.48□□□□□ -0.25
TNFRSF1A-201ENST00000162749 ADAMTSL4-AS1Q5T5F5 129 aa13.47□□□□□ -0.25
TNFRSF1A-201ENST00000162749 PRO1854Q9UHT4 67 aa13.47□□□□□ -0.25
TNFRSF1A-201ENST00000162749 MTURNQ8N3F0 131 aa13.46□□□□□ -0.25
TNFRSF1A-201ENST00000162749 LOC107984156A0A0G2JMH3 177 aa13.45□□□□□ -0.26
TNFRSF1A-201ENST00000162749 LINC00959A0A1B0GUT2 108 aa13.45□□□□□ -0.26
TNFRSF1A-201ENST00000162749 ZFAND6Q6FIF0 208 aa13.45□□□□□ -0.26
TNFRSF1A-201ENST00000162749 CLPSL2Q6UWE3 100 aa13.45□□□□□ -0.26
TNFRSF1A-201ENST00000162749 ARL17AQ8IVW1 177 aa13.45□□□□□ -0.26
TNFRSF1A-201ENST00000162749 A0A1B0GV72 72 aa13.44□□□□□ -0.26
TNFRSF1A-201ENST00000162749 LINC00269Q8N2A0 174 aa13.44□□□□□ -0.26
TNFRSF1A-201ENST00000162749 SMIM1B2RUZ4 78 aa13.44□□□□□ -0.26
TNFRSF1A-201ENST00000162749 ANGP03950 147 aaKnown RBP13.44□□□□□ -0.26
TNFRSF1A-201ENST00000162749 CSMD3Q7Z407 3707 aa13.43□□□□□ -0.26
TNFRSF1A-201ENST00000162749 IGHV3OR16-9A0A0B4J2B5 98 aa13.43□□□□□ -0.26
TNFRSF1A-201ENST00000162749 IGLV5-39A0A0G2JS06 123 aa13.43□□□□□ -0.26
TNFRSF1A-201ENST00000162749 GAGE12HA6NDE8 117 aa13.43□□□□□ -0.26
TNFRSF1A-201ENST00000162749 J3QR89 54 aa13.43□□□□□ -0.26
TNFRSF1A-201ENST00000162749 ESRGQ1W209 222 aa13.43□□□□□ -0.26
TNFRSF1A-201ENST00000162749 A0A0B4J2C4 111 aa13.42□□□□□ -0.26
TNFRSF1A-201ENST00000162749 SPANXDQ9BXN6 97 aa13.42□□□□□ -0.26
TNFRSF1A-201ENST00000162749 SPANXCQ9NY87 97 aa13.42□□□□□ -0.26
TNFRSF1A-201ENST00000162749 IGHV3-33P01772 117 aa13.41□□□□□ -0.26
TNFRSF1A-201ENST00000162749 PSMB2P49721 201 aa13.41□□□□□ -0.26
TNFRSF1A-201ENST00000162749 WFDC10BQ8IUB3 73 aa13.41□□□□□ -0.26
TNFRSF1A-201ENST00000162749 REG3AQ06141 175 aa13.41□□□□□ -0.26
TNFRSF1A-201ENST00000162749 PRSS2P07478 247 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 89.6 ms