RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 DPH3Q96FX2 82 aa10.24□□□□□ -0.77
CLN3-264ENST00000637985 V9GYV3 84 aa10.24□□□□□ -0.77
CLN3-264ENST00000637985 A0A0U1RQV1 116 aa10.23□□□□□ -0.77
CLN3-264ENST00000637985 ESDP10768 282 aa10.23□□□□□ -0.77
CLN3-264ENST00000637985 POLR2KP53803 58 aaKnown RBP10.23□□□□□ -0.77
CLN3-264ENST00000637985 RIGQ13278 110 aa10.23□□□□□ -0.77
CLN3-264ENST00000637985 LCE2AQ5TA79 106 aaPredicted RBP10.23□□□□□ -0.77
CLN3-264ENST00000637985 CHCHD10Q8WYQ3 142 aaPredicted RBP10.23□□□□□ -0.77
CLN3-264ENST00000637985 ISOC2Q96AB3 205 aa10.23□□□□□ -0.77
CLN3-264ENST00000637985 TMEM101Q96IK0 257 aa10.23□□□□□ -0.77
CLN3-264ENST00000637985 BTF3L4Q96K17 158 aa10.23□□□□□ -0.77
CLN3-264ENST00000637985 TRBV27A0A0K0K1C4 114 aa10.22□□□□□ -0.77
CLN3-264ENST00000637985 TSHBP01222 138 aa10.22□□□□□ -0.77
CLN3-264ENST00000637985 SLPIP03973 132 aa10.22□□□□□ -0.77
CLN3-264ENST00000637985 RPL23P62829 140 aaKnown RBP10.22□□□□□ -0.77
CLN3-264ENST00000637985 PRR3P79522 188 aaKnown RBP10.22□□□□□ -0.77
CLN3-264ENST00000637985 C15orf56Q8N910 161 aa10.22□□□□□ -0.77
CLN3-264ENST00000637985 NUP35Q8NFH5 326 aa10.22□□□□□ -0.77
CLN3-264ENST00000637985 OR5A1Q8NGJ0 315 aa10.22□□□□□ -0.77
CLN3-264ENST00000637985 SPACA4Q8TDM5 124 aa10.22□□□□□ -0.77
CLN3-264ENST00000637985 C7orf33Q8WU49 177 aa10.22□□□□□ -0.77
CLN3-264ENST00000637985 PLAC8Q9NZF1 115 aa10.22□□□□□ -0.77
CLN3-264ENST00000637985 PPP1R17O96001 155 aa10.21□□□□□ -0.77
CLN3-264ENST00000637985 CHTF8P0CG12 524 aa10.21□□□□□ -0.77
CLN3-264ENST00000637985 REG3GQ6UW15 175 aa10.21□□□□□ -0.77
CLN3-264ENST00000637985 AMN1Q8IY45 258 aa10.21□□□□□ -0.77
CLN3-264ENST00000637985 SMDT1Q9H4I9 107 aa10.21□□□□□ -0.77
CLN3-264ENST00000637985 NAT8Q9UHE5 227 aa10.21□□□□□ -0.77
CLN3-264ENST00000637985 NAT8BQ9UHF3 227 aa10.21□□□□□ -0.77
CLN3-264ENST00000637985 RPS10P46783 165 aaKnown RBP10.2□□□□□ -0.78
CLN3-264ENST00000637985 PEA15Q15121 130 aa10.2□□□□□ -0.78
CLN3-264ENST00000637985 TMEM242Q9NWH2 141 aa10.2□□□□□ -0.78
CLN3-264ENST00000637985 VCYO14598 125 aa10.19□□□□□ -0.78
CLN3-264ENST00000637985 ADIRFQ15847 76 aa10.19□□□□□ -0.78
CLN3-264ENST00000637985 SPINK6Q6UWN8 80 aa10.19□□□□□ -0.78
CLN3-264ENST00000637985 MRPL52Q86TS9 123 aaKnown RBP10.19□□□□□ -0.78
CLN3-264ENST00000637985 C7orf77A4D0Y5 90 aa10.18□□□□□ -0.78
CLN3-264ENST00000637985 C9JQL5 133 aa10.18□□□□□ -0.78
CLN3-264ENST00000637985 FOXI1Q12951 378 aa10.18□□□□□ -0.78
CLN3-264ENST00000637985 GVQW2A0A096LPI5 108 aaPredicted RBP10.17□□□□□ -0.78
CLN3-264ENST00000637985 LINC00959A0A1B0GUT2 108 aa10.17□□□□□ -0.78
CLN3-264ENST00000637985 A0A1B0GW15 77 aa10.17□□□□□ -0.78
CLN3-264ENST00000637985 SMIM27A0A1W2PRY6 76 aa10.17□□□□□ -0.78
CLN3-264ENST00000637985 PPP1R2P9O14990 202 aa10.17□□□□□ -0.78
CLN3-264ENST00000637985 NRACQ8N912 160 aa10.17□□□□□ -0.78
CLN3-264ENST00000637985 CDC42SE2Q9NRR3 84 aa10.17□□□□□ -0.78
CLN3-264ENST00000637985 SMKR1H3BMG3 65 aa10.16□□□□□ -0.78
CLN3-264ENST00000637985 FCER1GP30273 86 aa10.16□□□□□ -0.78
CLN3-264ENST00000637985 XCL1P47992 114 aa10.16□□□□□ -0.78
CLN3-264ENST00000637985 SUMO2P61956 95 aaKnown RBP10.16□□□□□ -0.78
CLN3-264ENST00000637985 SRSF3P84103 164 aaKnown RBP10.16□□□□□ -0.78
CLN3-264ENST00000637985 SMAGPQ0VAQ4 97 aa10.16□□□□□ -0.78
CLN3-264ENST00000637985 SS18Q15532 418 aa10.16□□□□□ -0.78
CLN3-264ENST00000637985 HIGD2BQ4VC39 106 aa10.16□□□□□ -0.78
CLN3-264ENST00000637985 FAM104BQ5XKR9 115 aa10.16□□□□□ -0.78
CLN3-264ENST00000637985 LINC00862A6NCI5 91 aa10.15□□□□□ -0.78
CLN3-264ENST00000637985 CCL25O15444 150 aa10.15□□□□□ -0.78
CLN3-264ENST00000637985 ZNF664Q8N3J9 261 aa10.15□□□□□ -0.78
CLN3-264ENST00000637985 KIR2DL4Q99706 377 aa10.15□□□□□ -0.78
CLN3-264ENST00000637985 CSDC2Q9Y534 153 aaKnown RBP10.15□□□□□ -0.78
CLN3-264ENST00000637985 IGHV1-58A0A0C4DH39 117 aa10.14□□□□□ -0.79
CLN3-264ENST00000637985 COX6A2Q02221 97 aa10.14□□□□□ -0.79
CLN3-264ENST00000637985 SRSF9Q13242 221 aaKnown RBP eCLIP10.14□□□□□ -0.79
CLN3-264ENST00000637985 MRPL51Q4U2R6 128 aaKnown RBP10.14□□□□□ -0.79
CLN3-264ENST00000637985 CAMPP49913 170 aa10.13□□□□□ -0.79
CLN3-264ENST00000637985 CD164L2Q6UWJ8 174 aa10.13□□□□□ -0.79
CLN3-264ENST00000637985 C20orf78Q9BR46 151 aa10.13□□□□□ -0.79
CLN3-264ENST00000637985 TRBV24-1A0A075B6N3 115 aa10.12□□□□□ -0.79
CLN3-264ENST00000637985 TCAPO15273 167 aa10.12□□□□□ -0.79
CLN3-264ENST00000637985 S100A8P05109 93 aa10.12□□□□□ -0.79
CLN3-264ENST00000637985 TMEM18Q96B42 140 aa10.12□□□□□ -0.79
CLN3-264ENST00000637985 PKIGQ9Y2B9 76 aa10.12□□□□□ -0.79
CLN3-264ENST00000637985 C1orf196B1AJZ1 125 aa10.11□□□□□ -0.79
CLN3-264ENST00000637985 CKS2P33552 79 aa10.11□□□□□ -0.79
CLN3-264ENST00000637985 RPL32P62910 135 aaKnown RBP10.11□□□□□ -0.79
CLN3-264ENST00000637985 UBE2D4Q9Y2X8 147 aa10.11□□□□□ -0.79
CLN3-264ENST00000637985 F8W036 122 aa10.1□□□□□ -0.79
CLN3-264ENST00000637985 PRSS3P2Q8NHM4 247 aa10.1□□□□□ -0.79
CLN3-264ENST00000637985 TIMM21Q9BVV7 248 aa10.1□□□□□ -0.79
CLN3-264ENST00000637985 ZNF561-AS1K7EIQ3 104 aa10.09□□□□□ -0.79
CLN3-264ENST00000637985 HBBP68871 147 aa10.09□□□□□ -0.79
CLN3-264ENST00000637985 MAJINQ3KP22 176 aa10.09□□□□□ -0.79
CLN3-264ENST00000637985 LINC00474Q9P2X8 69 aa10.09□□□□□ -0.79
CLN3-264ENST00000637985 IGKV2-24A0A0C4DH68 120 aa10.08□□□□□ -0.8
CLN3-264ENST00000637985 A0A1B0GXF2 115 aa10.08□□□□□ -0.8
CLN3-264ENST00000637985 TNFRSF6BO95407 300 aa10.08□□□□□ -0.8
CLN3-264ENST00000637985 MRPL54Q6P161 138 aaKnown RBP10.08□□□□□ -0.8
CLN3-264ENST00000637985 CARD19Q96LW7 228 aa10.08□□□□□ -0.8
CLN3-264ENST00000637985 PPBPP02775 128 aa10.07□□□□□ -0.8
CLN3-264ENST00000637985 D6R8Y8 96 aa10.06□□□□□ -0.8
CLN3-264ENST00000637985 COX7A2LO14548 114 aa10.06□□□□□ -0.8
CLN3-264ENST00000637985 MALP21145 153 aa10.06□□□□□ -0.8
CLN3-264ENST00000637985 SYCNQ0VAF6 134 aa10.06□□□□□ -0.8
CLN3-264ENST00000637985 ATP5L2Q7Z4Y8 100 aa10.06□□□□□ -0.8
CLN3-264ENST00000637985 STPG4Q8N801 248 aa10.06□□□□□ -0.8
CLN3-264ENST00000637985 LINC00526Q96FQ7 95 aa10.06□□□□□ -0.8
CLN3-264ENST00000637985 SMIM2Q9BVW6 85 aa10.06□□□□□ -0.8
CLN3-264ENST00000637985 A0A096LNI7 61 aa10.05□□□□□ -0.8
CLN3-264ENST00000637985 TRAV13-1A0A0B4J241 112 aa10.05□□□□□ -0.8
CLN3-264ENST00000637985 RNASE13Q5GAN3 156 aaKnown RBP10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms