RNA–Protein interactions for RNA: ENST00000637107.1

CLN3-256, Transcript of CLN3, battenin, human

TSL 5

Gene CLN3, Length 1,946 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-256	ENST00000637107	IGHV3-38	A0A0C4DH36	116 aa		12.24	□□□□□ -0.45
CLN3-256	ENST00000637107		A0A0J9YWU9	116 aa		12.24	□□□□□ -0.45
CLN3-256	ENST00000637107	ZNF815P	A8K554	130 aa		12.24	□□□□□ -0.45
CLN3-256	ENST00000637107	C16orf74	Q96GX8	76 aa		12.24	□□□□□ -0.45
CLN3-256	ENST00000637107	TRAV4	A0A0B4J268	109 aa		12.23	□□□□□ -0.45
CLN3-256	ENST00000637107	IGHV4-28	A0A0C4DH34	117 aa		12.23	□□□□□ -0.45
CLN3-256	ENST00000637107	SMIM13	P0DJ93	91 aa		12.23	□□□□□ -0.45
CLN3-256	ENST00000637107	DAZ2	Q13117	558 aa	Known RBP	12.23	□□□□□ -0.45
CLN3-256	ENST00000637107	AMELX	Q99217	191 aa		12.23	□□□□□ -0.45
CLN3-256	ENST00000637107	HIST1H4G	Q99525	98 aa		12.23	□□□□□ -0.45
CLN3-256	ENST00000637107	NOP10	Q9NPE3	64 aa	Known RBP	12.23	□□□□□ -0.45
CLN3-256	ENST00000637107	TRBV7-3	A0A075B6L6	115 aa		12.23	□□□□□ -0.45
CLN3-256	ENST00000637107	PLAC8L1	A1L4L8	177 aa		12.23	□□□□□ -0.45
CLN3-256	ENST00000637107	MIF	P14174	115 aa		12.23	□□□□□ -0.45
CLN3-256	ENST00000637107	COTL1	Q14019	142 aa		12.23	□□□□□ -0.45
CLN3-256	ENST00000637107	RAB37	Q96AX2	223 aa		12.23	□□□□□ -0.45
CLN3-256	ENST00000637107	CRYBA4	P53673	196 aa		12.22	□□□□□ -0.45
CLN3-256	ENST00000637107	CEMP1	Q6PRD7	247 aa	Predicted RBP	12.22	□□□□□ -0.45
CLN3-256	ENST00000637107	PLEKHB2	Q96CS7	222 aa		12.22	□□□□□ -0.45
CLN3-256	ENST00000637107	IGKV2D-29	A0A075B6S2	120 aa	Predicted RBP	12.21	□□□□□ -0.45
CLN3-256	ENST00000637107		A0A0J9YXV3	536 aa		12.21	□□□□□ -0.45
CLN3-256	ENST00000637107	IGKV2-29	A2NJV5	120 aa	Predicted RBP	12.21	□□□□□ -0.45
CLN3-256	ENST00000637107	ZNF22	P17026	224 aa	Predicted RBP	12.21	□□□□□ -0.45
CLN3-256	ENST00000637107	SPANXA1	Q9NS26	97 aa		12.21	□□□□□ -0.45
CLN3-256	ENST00000637107	UBE2D4	Q9Y2X8	147 aa		12.21	□□□□□ -0.45
CLN3-256	ENST00000637107	TMEM223	A0PJW6	202 aa		12.21	□□□□□ -0.46
CLN3-256	ENST00000637107		H3BUT2	72 aa		12.21	□□□□□ -0.46
CLN3-256	ENST00000637107	TSPEAR-AS2	P59090	65 aa		12.21	□□□□□ -0.46
CLN3-256	ENST00000637107	RRN3P1	Q2M238	152 aa		12.21	□□□□□ -0.46
CLN3-256	ENST00000637107	DNAH7	Q8WXX0	4024 aa		12.21	□□□□□ -0.46
CLN3-256	ENST00000637107	SMIM9	A6NGZ8	99 aa		12.2	□□□□□ -0.46
CLN3-256	ENST00000637107		K7EQD1	137 aa		12.2	□□□□□ -0.46
CLN3-256	ENST00000637107	NAA38	Q9BRA0	125 aa	Known RBP	12.2	□□□□□ -0.46
CLN3-256	ENST00000637107	NHP2	Q9NX24	153 aa	Known RBP	12.19	□□□□□ -0.46
CLN3-256	ENST00000637107	TRBV10-1	A0A0K0K1A3	114 aa		12.19	□□□□□ -0.46
CLN3-256	ENST00000637107	SCGB1D4	Q6XE38	83 aa		12.19	□□□□□ -0.46
CLN3-256	ENST00000637107	C11orf68	Q9H3H3	251 aa	Known RBP	12.19	□□□□□ -0.46
CLN3-256	ENST00000637107	GAGE12B	A1L429	117 aa		12.18	□□□□□ -0.46
CLN3-256	ENST00000637107		K7ERJ3	54 aa		12.18	□□□□□ -0.46
CLN3-256	ENST00000637107	LEPROT	O15243	131 aa		12.18	□□□□□ -0.46
CLN3-256	ENST00000637107	GAGE7	O76087	117 aa		12.18	□□□□□ -0.46
CLN3-256	ENST00000637107	GAGE12F	P0CL80	117 aa		12.18	□□□□□ -0.46
CLN3-256	ENST00000637107	GAGE12G	P0CL81	117 aa		12.18	□□□□□ -0.46
CLN3-256	ENST00000637107	GAGE12I	P0CL82	117 aa		12.18	□□□□□ -0.46
CLN3-256	ENST00000637107	RPL36A	P83881	106 aa	Known RBP	12.18	□□□□□ -0.46
CLN3-256	ENST00000637107	RPL36AL	Q969Q0	106 aa	Known RBP	12.18	□□□□□ -0.46
CLN3-256	ENST00000637107		J3QQQ9	107 aa		12.17	□□□□□ -0.46
CLN3-256	ENST00000637107	RNASE13	Q5GAN3	156 aa	Known RBP	12.17	□□□□□ -0.46
CLN3-256	ENST00000637107	MRPS36	P82909	103 aa	Known RBP	12.17	□□□□□ -0.46
CLN3-256	ENST00000637107	SLC25A29	Q8N8R3	303 aa		12.17	□□□□□ -0.46
CLN3-256	ENST00000637107	LGALS3	P17931	250 aa	Known RBP	12.16	□□□□□ -0.46
CLN3-256	ENST00000637107		Q6ZUT4	128 aa		12.16	□□□□□ -0.46
CLN3-256	ENST00000637107	CELA1	Q9UNI1	258 aa		12.16	□□□□□ -0.46
CLN3-256	ENST00000637107		A0A0J9YY99	117 aa		12.15	□□□□□ -0.46
CLN3-256	ENST00000637107	C12orf74	Q32Q52	190 aa		12.15	□□□□□ -0.46
CLN3-256	ENST00000637107	WWC2-AS2	Q96NR7	200 aa		12.15	□□□□□ -0.46
CLN3-256	ENST00000637107	TIMM21	Q9BVV7	248 aa		12.15	□□□□□ -0.46
CLN3-256	ENST00000637107	TRGV2	A0A075B6R0	118 aa		12.15	□□□□□ -0.46
CLN3-256	ENST00000637107		A0A1W2PPM0	123 aa		12.15	□□□□□ -0.46
CLN3-256	ENST00000637107	GAGE10	A6NGK3	116 aa		12.15	□□□□□ -0.46
CLN3-256	ENST00000637107	UBE2D3	P61077	147 aa		12.15	□□□□□ -0.46
CLN3-256	ENST00000637107	UBE2D2	P62837	147 aa		12.15	□□□□□ -0.46
CLN3-256	ENST00000637107	GAGE12J	A6NER3	117 aa		12.14	□□□□□ -0.47
CLN3-256	ENST00000637107	CIDEA	O60543	219 aa		12.14	□□□□□ -0.47
CLN3-256	ENST00000637107	GAGE4	Q13068	117 aa		12.14	□□□□□ -0.47
CLN3-256	ENST00000637107	GAGE5	Q13069	117 aa		12.14	□□□□□ -0.47
CLN3-256	ENST00000637107	GAGE13	Q4V321	117 aa		12.14	□□□□□ -0.47
CLN3-256	ENST00000637107	DAZ4	Q86SG3	579 aa	Known RBP	12.14	□□□□□ -0.47
CLN3-256	ENST00000637107	OR5A1	Q8NGJ0	315 aa		12.14	□□□□□ -0.47
CLN3-256	ENST00000637107	DAZ3	Q9NR90	486 aa	Known RBP	12.14	□□□□□ -0.47
CLN3-256	ENST00000637107	CSMD3	Q7Z407	3707 aa		12.14	□□□□□ -0.47
CLN3-256	ENST00000637107	TINCR	A0A1B0GVN0	87 aa		12.13	□□□□□ -0.47
CLN3-256	ENST00000637107	SRSF9	Q13242	221 aa	Known RBP eCLIP	12.13	□□□□□ -0.47
CLN3-256	ENST00000637107	IGHV3-64	A0A075B6Q5	118 aa		12.13	□□□□□ -0.47
CLN3-256	ENST00000637107		A0A1B0GWB2	263 aa		12.13	□□□□□ -0.47
CLN3-256	ENST00000637107		K7EP34	96 aa		12.13	□□□□□ -0.47
CLN3-256	ENST00000637107	FAM222A	Q5U5X8	452 aa		12.13	□□□□□ -0.47
CLN3-256	ENST00000637107	NTM-AS1	Q6ZSK4	140 aa		12.13	□□□□□ -0.47
CLN3-256	ENST00000637107	NANOS2	P60321	138 aa	Known RBP	12.12	□□□□□ -0.47
CLN3-256	ENST00000637107	GTF2H5	Q6ZYL4	71 aa		12.12	□□□□□ -0.47
CLN3-256	ENST00000637107	C11orf45	Q8TAV5	145 aa		12.12	□□□□□ -0.47
CLN3-256	ENST00000637107	SPANXB1	Q9NS25	103 aa	Predicted RBP	12.12	□□□□□ -0.47
CLN3-256	ENST00000637107	IGLL5	B9A064	214 aa		12.11	□□□□□ -0.47
CLN3-256	ENST00000637107	STARD9	Q9P2P6	4700 aa		12.11	□□□□□ -0.47
CLN3-256	ENST00000637107	TRBV6-4	A0A1B0GX49	114 aa		12.11	□□□□□ -0.47
CLN3-256	ENST00000637107	DGAT2L7P	Q6IED9	249 aa		12.11	□□□□□ -0.47
CLN3-256	ENST00000637107	LINC00694	P0DN24	101 aa		12.1	□□□□□ -0.47
CLN3-256	ENST00000637107	FABP2	P12104	132 aa		12.1	□□□□□ -0.47
CLN3-256	ENST00000637107	UBE2D1	P51668	147 aa		12.1	□□□□□ -0.47
CLN3-256	ENST00000637107	TRGV4	A0A0C4DH28	118 aa		12.09	□□□□□ -0.47
CLN3-256	ENST00000637107	SPART-AS1	P0CW21	52 aa		12.09	□□□□□ -0.47
CLN3-256	ENST00000637107	IGHV3-30-3	P0DP02	117 aa		12.09	□□□□□ -0.47
CLN3-256	ENST00000637107	SPCS1	Q9Y6A9	102 aa		12.09	□□□□□ -0.47
CLN3-256	ENST00000637107	LOC100131303	A0A0U1RQF7	123 aa		12.09	□□□□□ -0.47
CLN3-256	ENST00000637107	FHL2	Q14192	279 aa		12.09	□□□□□ -0.47
CLN3-256	ENST00000637107	TMEM238L	A0A1B0GVL6	79 aa		12.08	□□□□□ -0.48
CLN3-256	ENST00000637107		A6NJY4	79 aa		12.08	□□□□□ -0.48
CLN3-256	ENST00000637107	MUC7	Q8TAX7	377 aa		12.08	□□□□□ -0.48
CLN3-256	ENST00000637107	GTSF1L	Q9H1H1	148 aa		12.08	□□□□□ -0.48
CLN3-256	ENST00000637107	TRAV8-3	A0A0A6YYJ7	113 aa		12.07	□□□□□ -0.48

Retrieved 100 of 20,778 RNA–protein pairs in 95.5 ms