RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 TIMM21Q9BVV7 248 aa13.23□□□□□ -0.29
UPF3A-211ENST00000618700 CSDC2Q9Y534 153 aaKnown RBP13.23□□□□□ -0.29
UPF3A-211ENST00000618700 DNAH17Q9UFH2 4485 aa13.22□□□□□ -0.29
UPF3A-211ENST00000618700 ENHOQ6UWT2 76 aa13.22□□□□□ -0.29
UPF3A-211ENST00000618700 Q6ZRN7 208 aaPredicted RBP13.22□□□□□ -0.29
UPF3A-211ENST00000618700 FA2HQ7L5A8 372 aa13.22□□□□□ -0.29
UPF3A-211ENST00000618700 RTL8CO15255 209 aa13.21□□□□□ -0.29
UPF3A-211ENST00000618700 SMAGPQ0VAQ4 97 aa13.21□□□□□ -0.29
UPF3A-211ENST00000618700 LINC00269Q8N2A0 174 aa13.21□□□□□ -0.29
UPF3A-211ENST00000618700 OR5A1Q8NGJ0 315 aa13.21□□□□□ -0.29
UPF3A-211ENST00000618700 UBE2WQ96B02 151 aa13.21□□□□□ -0.29
UPF3A-211ENST00000618700 Q9HAA7 133 aa13.21□□□□□ -0.29
UPF3A-211ENST00000618700 TRAV8-3A0A0A6YYJ7 113 aa13.2□□□□□ -0.3
UPF3A-211ENST00000618700 C2orf66Q6UXQ4 117 aa13.2□□□□□ -0.3
UPF3A-211ENST00000618700 NFE4Q86UQ8 179 aa13.2□□□□□ -0.3
UPF3A-211ENST00000618700 TMEM101Q96IK0 257 aa13.2□□□□□ -0.3
UPF3A-211ENST00000618700 SPANXA1Q9NS26 97 aa13.2□□□□□ -0.3
UPF3A-211ENST00000618700 AP5S1Q9NUS5 200 aa13.2□□□□□ -0.3
UPF3A-211ENST00000618700 CYSLTR1Q9Y271 337 aa13.2□□□□□ -0.3
UPF3A-211ENST00000618700 FAT2Q9NYQ8 4349 aa13.2□□□□□ -0.3
UPF3A-211ENST00000618700 CRPP02741 224 aa13.19□□□□□ -0.3
UPF3A-211ENST00000618700 LINC00614P0C842 121 aa13.19□□□□□ -0.3
UPF3A-211ENST00000618700 REG3AQ06141 175 aa13.19□□□□□ -0.3
UPF3A-211ENST00000618700 CLPSL2Q6UWE3 100 aa13.19□□□□□ -0.3
UPF3A-211ENST00000618700 CDC42SE2Q9NRR3 84 aa13.19□□□□□ -0.3
UPF3A-211ENST00000618700 RAB5BP61020 215 aa13.18□□□□□ -0.3
UPF3A-211ENST00000618700 Q0VG73 95 aa13.18□□□□□ -0.3
UPF3A-211ENST00000618700 XP32Q5T750 250 aa13.18□□□□□ -0.3
UPF3A-211ENST00000618700 Q6ZUT4 128 aa13.18□□□□□ -0.3
UPF3A-211ENST00000618700 FAM104AQ969W3 186 aa13.18□□□□□ -0.3
UPF3A-211ENST00000618700 PYGO1Q9Y3Y4 419 aa13.18□□□□□ -0.3
UPF3A-211ENST00000618700 G0S2P27469 103 aa13.17□□□□□ -0.3
UPF3A-211ENST00000618700 MIAQ16674 131 aa13.17□□□□□ -0.3
UPF3A-211ENST00000618700 DGAT2L7PQ6IED9 249 aa13.17□□□□□ -0.3
UPF3A-211ENST00000618700 ZNF664Q8N3J9 261 aa13.17□□□□□ -0.3
UPF3A-211ENST00000618700 TOMM6Q96B49 74 aa13.17□□□□□ -0.3
UPF3A-211ENST00000618700 MRPS36P82909 103 aaKnown RBP13.16□□□□□ -0.3
UPF3A-211ENST00000618700 A0A096LNJ9 63 aa13.15□□□□□ -0.3
UPF3A-211ENST00000618700 CHCHD1Q96BP2 118 aaKnown RBP13.15□□□□□ -0.3
UPF3A-211ENST00000618700 IGIPA6NJ69 53 aa13.14□□□□□ -0.31
UPF3A-211ENST00000618700 RMI2Q96E14 147 aa13.14□□□□□ -0.31
UPF3A-211ENST00000618700 IGLV4-3A0A075B6K6 122 aa13.13□□□□□ -0.31
UPF3A-211ENST00000618700 LINC01549A6NIU2 74 aa13.13□□□□□ -0.31
UPF3A-211ENST00000618700 HIST1H2BKO60814 126 aa13.13□□□□□ -0.31
UPF3A-211ENST00000618700 HIST1H2BJP06899 126 aa13.13□□□□□ -0.31
UPF3A-211ENST00000618700 NPSP0C0P6 89 aa13.13□□□□□ -0.31
UPF3A-211ENST00000618700 HIST1H2BOP23527 126 aa13.13□□□□□ -0.31
UPF3A-211ENST00000618700 HIST1H2BBP33778 126 aa13.13□□□□□ -0.31
UPF3A-211ENST00000618700 HIST1H2BDP58876 126 aa13.13□□□□□ -0.31
UPF3A-211ENST00000618700 LINC00310P59036 64 aa13.13□□□□□ -0.31
UPF3A-211ENST00000618700 HIST1H2BCP62807 126 aa13.13□□□□□ -0.31
UPF3A-211ENST00000618700 HIST2H2BEQ16778 126 aa13.13□□□□□ -0.31
UPF3A-211ENST00000618700 HIST2H2BFQ5QNW6 126 aaPredicted RBP13.13□□□□□ -0.31
UPF3A-211ENST00000618700 BAGE3Q86Y29 109 aa13.13□□□□□ -0.31
UPF3A-211ENST00000618700 HIST1H2BHQ93079 126 aa13.13□□□□□ -0.31
UPF3A-211ENST00000618700 HIST1H2BNQ99877 126 aa13.13□□□□□ -0.31
UPF3A-211ENST00000618700 HIST1H2BMQ99879 126 aa13.13□□□□□ -0.31
UPF3A-211ENST00000618700 OPRPNQ99935 248 aaPredicted RBP13.13□□□□□ -0.31
UPF3A-211ENST00000618700 TM2D2Q9BX73 214 aa13.13□□□□□ -0.31
UPF3A-211ENST00000618700 IGKV2D-24A0A075B6R9 120 aa13.12□□□□□ -0.31
UPF3A-211ENST00000618700 TRAV8-4A0A0B4J246 113 aa13.12□□□□□ -0.31
UPF3A-211ENST00000618700 RNASE13Q5GAN3 156 aaKnown RBP13.12□□□□□ -0.31
UPF3A-211ENST00000618700 KRTAP26-1Q6PEX3 210 aa13.12□□□□□ -0.31
UPF3A-211ENST00000618700 LINC00336Q6ZUF6 198 aa13.12□□□□□ -0.31
UPF3A-211ENST00000618700 TIMM17AQ99595 171 aa13.12□□□□□ -0.31
UPF3A-211ENST00000618700 C1orf43Q9BWL3 253 aa13.12□□□□□ -0.31
UPF3A-211ENST00000618700 COX11Q9Y6N1 276 aa13.12□□□□□ -0.31
UPF3A-211ENST00000618700 EPPK1P58107 5090 aaKnown RBP13.12□□□□□ -0.31
UPF3A-211ENST00000618700 HBDP02042 147 aa13.11□□□□□ -0.31
UPF3A-211ENST00000618700 PMCHL1Q16048 86 aa13.11□□□□□ -0.31
UPF3A-211ENST00000618700 ERASQ7Z444 233 aa13.11□□□□□ -0.31
UPF3A-211ENST00000618700 IGLV10-54A0A075B6I4 117 aa13.1□□□□□ -0.31
UPF3A-211ENST00000618700 IGKV3OR2-268A0A0C4DH90 116 aa13.1□□□□□ -0.31
UPF3A-211ENST00000618700 SERF1AO75920 110 aa13.1□□□□□ -0.31
UPF3A-211ENST00000618700 TMEM141Q96I45 108 aa13.1□□□□□ -0.31
UPF3A-211ENST00000618700 LINC00959A0A1B0GUT2 108 aa13.09□□□□□ -0.31
UPF3A-211ENST00000618700 SCGB3A1Q96QR1 104 aa13.09□□□□□ -0.31
UPF3A-211ENST00000618700 PSCAO43653 123 aa13.08□□□□□ -0.32
UPF3A-211ENST00000618700 PDZD11Q5EBL8 140 aa13.08□□□□□ -0.32
UPF3A-211ENST00000618700 LINC00173Q6ZV60 143 aa13.08□□□□□ -0.32
UPF3A-211ENST00000618700 MAPKAPK5-AS1Q8N8E1 139 aa13.08□□□□□ -0.32
UPF3A-211ENST00000618700 PRSS29PA6NIE9 313 aa13.07□□□□□ -0.32
UPF3A-211ENST00000618700 C1orf196B1AJZ1 125 aa13.07□□□□□ -0.32
UPF3A-211ENST00000618700 AMELXQ99217 191 aa13.07□□□□□ -0.32
UPF3A-211ENST00000618700 DNAH11Q96DT5 4516 aa13.07□□□□□ -0.32
UPF3A-211ENST00000618700 HECTD4Q9Y4D8 3996 aa13.06□□□□□ -0.32
UPF3A-211ENST00000618700 LRCOL1A6NCL2 159 aa13.06□□□□□ -0.32
UPF3A-211ENST00000618700 IFITM10A6NMD0 228 aa13.06□□□□□ -0.32
UPF3A-211ENST00000618700 NUPR1O60356 82 aa13.06□□□□□ -0.32
UPF3A-211ENST00000618700 HSBP1O75506 76 aa13.06□□□□□ -0.32
UPF3A-211ENST00000618700 PAPPA-AS1Q5QFB9 102 aa13.06□□□□□ -0.32
UPF3A-211ENST00000618700 Q6ZN92 141 aa13.06□□□□□ -0.32
UPF3A-211ENST00000618700 CHCHD10Q8WYQ3 142 aaPredicted RBP13.06□□□□□ -0.32
UPF3A-211ENST00000618700 TRAV13-1A0A0B4J241 112 aa13.05□□□□□ -0.32
UPF3A-211ENST00000618700 CCL25O15444 150 aa13.05□□□□□ -0.32
UPF3A-211ENST00000618700 SS18Q15532 418 aa13.05□□□□□ -0.32
UPF3A-211ENST00000618700 TEX43Q6ZNM6 134 aa13.05□□□□□ -0.32
UPF3A-211ENST00000618700 PKD1P98161 4303 aa13.05□□□□□ -0.32
UPF3A-211ENST00000618700 ZC2HC1BQ5TFG8 222 aa13.04□□□□□ -0.32
UPF3A-211ENST00000618700 VCX2Q9H322 139 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms