RNA–Protein interactions for RNA: ENST00000601981.5

UPF1-213, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-213ENST00000601981 LINC00476Q8WZB0 136 aa7.01□□□□□ -1.29
UPF1-213ENST00000601981 VSIG2Q96IQ7 327 aa7.01□□□□□ -1.29
UPF1-213ENST00000601981 DAZ3Q9NR90 486 aaKnown RBP7.01□□□□□ -1.29
UPF1-213ENST00000601981 DNAH1Q9P2D7 4330 aa7□□□□□ -1.29
UPF1-213ENST00000601981 hDV102S1A0JD36 115 aa7□□□□□ -1.29
UPF1-213ENST00000601981 LINC00587B1AMM8 73 aa7□□□□□ -1.29
UPF1-213ENST00000601981 F8VRH5 84 aa7□□□□□ -1.29
UPF1-213ENST00000601981 IGLC3P0DOY3 106 aa7□□□□□ -1.29
UPF1-213ENST00000601981 PLNP26678 52 aa7□□□□□ -1.29
UPF1-213ENST00000601981 MIEN1Q9BRT3 115 aa7□□□□□ -1.29
UPF1-213ENST00000601981 CHCHD7Q9BUK0 85 aa7□□□□□ -1.29
UPF1-213ENST00000601981 PYGO1Q9Y3Y4 419 aa7□□□□□ -1.29
UPF1-213ENST00000601981 A0A096LPF7 62 aa6.99□□□□□ -1.29
UPF1-213ENST00000601981 LCE6AA0A183 80 aa6.99□□□□□ -1.29
UPF1-213ENST00000601981 GAGE12JA6NER3 117 aa6.99□□□□□ -1.29
UPF1-213ENST00000601981 IGKCP01834 107 aa6.99□□□□□ -1.29
UPF1-213ENST00000601981 LINC00694P0DN24 101 aa6.99□□□□□ -1.29
UPF1-213ENST00000601981 GAGE1Q13065 139 aa6.99□□□□□ -1.29
UPF1-213ENST00000601981 GAGE4Q13068 117 aa6.99□□□□□ -1.29
UPF1-213ENST00000601981 GAGE5Q13069 117 aa6.99□□□□□ -1.29
UPF1-213ENST00000601981 PMVKQ15126 192 aa6.99□□□□□ -1.29
UPF1-213ENST00000601981 GAGE13Q4V321 117 aa6.99□□□□□ -1.29
UPF1-213ENST00000601981 DEFB104AQ8WTQ1 72 aa6.99□□□□□ -1.29
UPF1-213ENST00000601981 SPANXA1Q9NS26 97 aa6.99□□□□□ -1.29
UPF1-213ENST00000601981 MRPL35Q9NZE8 188 aaKnown RBP6.99□□□□□ -1.29
UPF1-213ENST00000601981 UQCR10Q9UDW1 63 aa6.99□□□□□ -1.29
UPF1-213ENST00000601981 CHTOPQ9Y3Y2 248 aaKnown RBP6.99□□□□□ -1.29
UPF1-213ENST00000601981 IGHV3-38A0A0C4DH36 116 aa6.98□□□□□ -1.29
UPF1-213ENST00000601981 PRSS29PA6NIE9 313 aa6.98□□□□□ -1.29
UPF1-213ENST00000601981 PAPPA-AS1Q5QFB9 102 aa6.98□□□□□ -1.29
UPF1-213ENST00000601981 GTSF1LQ9H1H1 148 aa6.98□□□□□ -1.29
UPF1-213ENST00000601981 IGLV4-3A0A075B6K6 122 aa6.97□□□□□ -1.29
UPF1-213ENST00000601981 SMAGPQ0VAQ4 97 aa6.97□□□□□ -1.29
UPF1-213ENST00000601981 TMEM97Q5BJF2 176 aa6.97□□□□□ -1.29
UPF1-213ENST00000601981 LYSTQ99698 3801 aa6.97□□□□□ -1.29
UPF1-213ENST00000601981 TIMM21Q9BVV7 248 aa6.97□□□□□ -1.29
UPF1-213ENST00000601981 CST9LQ9H4G1 147 aa6.97□□□□□ -1.29
UPF1-213ENST00000601981 ALMS1Q8TCU4 4167 aa6.96□□□□□ -1.29
UPF1-213ENST00000601981 LOC100131303A0A0U1RQF7 123 aa6.96□□□□□ -1.3
UPF1-213ENST00000601981 ANKRD39Q53RE8 183 aa6.96□□□□□ -1.3
UPF1-213ENST00000601981 ATP6V0E2Q8NHE4 81 aa6.96□□□□□ -1.3
UPF1-213ENST00000601981 UBE2D4Q9Y2X8 147 aa6.96□□□□□ -1.3
UPF1-213ENST00000601981 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.95□□□□□ -1.3
UPF1-213ENST00000601981 IGKV2-29A2NJV5 120 aaPredicted RBP6.95□□□□□ -1.3
UPF1-213ENST00000601981 COX8AP10176 69 aa6.95□□□□□ -1.3
UPF1-213ENST00000601981 TIRAPP58753 221 aa6.95□□□□□ -1.3
UPF1-213ENST00000601981 MRPS36P82909 103 aaKnown RBP6.95□□□□□ -1.3
UPF1-213ENST00000601981 SLC25A34Q6PIV7 304 aa6.95□□□□□ -1.3
UPF1-213ENST00000601981 NTM-AS1Q6ZSK4 140 aa6.95□□□□□ -1.3
UPF1-213ENST00000601981 MRPL52Q86TS9 123 aaKnown RBP6.95□□□□□ -1.3
UPF1-213ENST00000601981 C14orf144Q96I85 54 aa6.95□□□□□ -1.3
UPF1-213ENST00000601981 AMELXQ99217 191 aa6.95□□□□□ -1.3
UPF1-213ENST00000601981 MRPS16Q9Y3D3 137 aaKnown RBP6.95□□□□□ -1.3
UPF1-213ENST00000601981 IGLV4-69A0A075B6H9 119 aa6.94□□□□□ -1.3
UPF1-213ENST00000601981 TRAV8-6A0A0B4J262 113 aa6.94□□□□□ -1.3
UPF1-213ENST00000601981 H7C423 109 aa6.94□□□□□ -1.3
UPF1-213ENST00000601981 HNRNPA3P51991 378 aaKnown RBP6.94□□□□□ -1.3
UPF1-213ENST00000601981 ESRGQ1W209 222 aa6.94□□□□□ -1.3
UPF1-213ENST00000601981 ZC2HC1BQ5TFG8 222 aa6.94□□□□□ -1.3
UPF1-213ENST00000601981 LYPD5Q6UWN5 251 aa6.94□□□□□ -1.3
UPF1-213ENST00000601981 NFE4Q86UQ8 179 aa6.94□□□□□ -1.3
UPF1-213ENST00000601981 STPG4Q8N801 248 aa6.94□□□□□ -1.3
UPF1-213ENST00000601981 FAM104AQ969W3 186 aa6.94□□□□□ -1.3
UPF1-213ENST00000601981 UPK3BQ9BT76 320 aa6.94□□□□□ -1.3
UPF1-213ENST00000601981 TMEM243Q9BU79 118 aa6.94□□□□□ -1.3
UPF1-213ENST00000601981 VCX2Q9H322 139 aa6.94□□□□□ -1.3
UPF1-213ENST00000601981 LINC00588Q9Y4M8 146 aa6.94□□□□□ -1.3
UPF1-213ENST00000601981 CSDC2Q9Y534 153 aaKnown RBP6.94□□□□□ -1.3
UPF1-213ENST00000601981 TRBV25-1A0A075B6N4 114 aa6.93□□□□□ -1.3
UPF1-213ENST00000601981 DLEU1O43261 78 aa6.93□□□□□ -1.3
UPF1-213ENST00000601981 OPRPNQ99935 248 aaPredicted RBP6.93□□□□□ -1.3
UPF1-213ENST00000601981 TRBV6-8A0A0A6YYG3 113 aa6.92□□□□□ -1.3
UPF1-213ENST00000601981 C11orf86A6NJI1 115 aa6.92□□□□□ -1.3
UPF1-213ENST00000601981 UBE2L6O14933 153 aa6.92□□□□□ -1.3
UPF1-213ENST00000601981 FGF6P10767 208 aa6.92□□□□□ -1.3
UPF1-213ENST00000601981 TTC32Q5I0X7 151 aa6.92□□□□□ -1.3
UPF1-213ENST00000601981 LELP1Q5T871 98 aa6.92□□□□□ -1.3
UPF1-213ENST00000601981 Q6ZUT4 128 aa6.92□□□□□ -1.3
UPF1-213ENST00000601981 C2orf88Q9BSF0 95 aa6.92□□□□□ -1.3
UPF1-213ENST00000601981 SIVA1O15304 175 aa6.91□□□□□ -1.3
UPF1-213ENST00000601981 ZNF25P17030 456 aaPredicted RBP6.91□□□□□ -1.3
UPF1-213ENST00000601981 NMUP48645 174 aa6.91□□□□□ -1.3
UPF1-213ENST00000601981 HERVK_113P61574 105 aa6.91□□□□□ -1.3
UPF1-213ENST00000601981 DGAT2L7PQ6IED9 249 aa6.91□□□□□ -1.3
UPF1-213ENST00000601981 BOD1L2Q8IYS8 172 aa6.91□□□□□ -1.3
UPF1-213ENST00000601981 CHAC1Q9BUX1 264 aa6.91□□□□□ -1.3
UPF1-213ENST00000601981 Q9H8V8 135 aa6.91□□□□□ -1.3
UPF1-213ENST00000601981 IGKV2D-26A0A0A0MRZ7 120 aa6.9□□□□□ -1.3
UPF1-213ENST00000601981 E9PLD3 99 aa6.9□□□□□ -1.3
UPF1-213ENST00000601981 K7EP13 123 aa6.9□□□□□ -1.3
UPF1-213ENST00000601981 AMMECR1LQ6DCA0 310 aa6.9□□□□□ -1.3
UPF1-213ENST00000601981 OR5A1Q8NGJ0 315 aa6.9□□□□□ -1.3
UPF1-213ENST00000601981 TMEM101Q96IK0 257 aa6.9□□□□□ -1.3
UPF1-213ENST00000601981 A0A0J9YXV3 536 aa6.89□□□□□ -1.31
UPF1-213ENST00000601981 TINCRA0A1B0GVN0 87 aa6.89□□□□□ -1.31
UPF1-213ENST00000601981 M0R143 59 aa6.89□□□□□ -1.31
UPF1-213ENST00000601981 UBE2D1P51668 147 aa6.89□□□□□ -1.31
UPF1-213ENST00000601981 CTAG1AP78358 180 aa6.89□□□□□ -1.31
UPF1-213ENST00000601981 PCP2Q8IVA1 136 aa6.89□□□□□ -1.31
UPF1-213ENST00000601981 VPS13DQ5THJ4 4388 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms