RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 C10orf91Q5T1B1 145 aa10.6□□□□□ -0.71
LSM4-206ENST00000600289 BTF3L4Q96K17 158 aa10.6□□□□□ -0.71
LSM4-206ENST00000600289 KIR2DL4Q99706 377 aa10.6□□□□□ -0.71
LSM4-206ENST00000600289 TNFRSF6BO95407 300 aa10.59□□□□□ -0.71
LSM4-206ENST00000600289 USP17L23D6RBM5 183 aa10.58□□□□□ -0.72
LSM4-206ENST00000600289 FCER1GP30273 86 aa10.58□□□□□ -0.72
LSM4-206ENST00000600289 RNASEKQ6P5S7 137 aaKnown RBP10.58□□□□□ -0.72
LSM4-206ENST00000600289 ORMDL3Q8N138 153 aa10.58□□□□□ -0.72
LSM4-206ENST00000600289 TMEM101Q96IK0 257 aa10.58□□□□□ -0.72
LSM4-206ENST00000600289 IGLV10-54A0A075B6I4 117 aa10.57□□□□□ -0.72
LSM4-206ENST00000600289 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.57□□□□□ -0.72
LSM4-206ENST00000600289 TRAV9-1A0A075B6T8 112 aa10.57□□□□□ -0.72
LSM4-206ENST00000600289 XGP55808 180 aa10.57□□□□□ -0.72
LSM4-206ENST00000600289 SMAGPQ0VAQ4 97 aa10.57□□□□□ -0.72
LSM4-206ENST00000600289 OR5A1Q8NGJ0 315 aa10.57□□□□□ -0.72
LSM4-206ENST00000600289 SMIM2Q9BVW6 85 aa10.57□□□□□ -0.72
LSM4-206ENST00000600289 LAMTOR2Q9Y2Q5 125 aa10.57□□□□□ -0.72
LSM4-206ENST00000600289 CSDC2Q9Y534 153 aaKnown RBP10.57□□□□□ -0.72
LSM4-206ENST00000600289 NPYP01303 97 aa10.56□□□□□ -0.72
LSM4-206ENST00000600289 CARHSP1Q9Y2V2 147 aaKnown RBP10.56□□□□□ -0.72
LSM4-206ENST00000600289 PRSS47A8MTI9 375 aa10.55□□□□□ -0.72
LSM4-206ENST00000600289 TMEM136Q6ZRR5 245 aa10.55□□□□□ -0.72
LSM4-206ENST00000600289 Q6ZSA8 131 aa10.55□□□□□ -0.72
LSM4-206ENST00000600289 CLRN3Q8NCR9 226 aa10.55□□□□□ -0.72
LSM4-206ENST00000600289 TIMM21Q9BVV7 248 aa10.55□□□□□ -0.72
LSM4-206ENST00000600289 CDC42SE2Q9NRR3 84 aa10.55□□□□□ -0.72
LSM4-206ENST00000600289 DGAT2L7PQ6IED9 249 aa10.54□□□□□ -0.72
LSM4-206ENST00000600289 TMEM18Q96B42 140 aa10.54□□□□□ -0.72
LSM4-206ENST00000600289 PRELID3AQ96N28 172 aa10.54□□□□□ -0.72
LSM4-206ENST00000600289 UBE2D4Q9Y2X8 147 aa10.54□□□□□ -0.72
LSM4-206ENST00000600289 PRSS1P07477 247 aa10.53□□□□□ -0.72
LSM4-206ENST00000600289 ZNF664Q8N3J9 261 aa10.53□□□□□ -0.72
LSM4-206ENST00000600289 RHEBQ15382 184 aa10.52□□□□□ -0.73
LSM4-206ENST00000600289 CHCHD10Q8WYQ3 142 aaPredicted RBP10.52□□□□□ -0.73
LSM4-206ENST00000600289 LINC00959A0A1B0GUT2 108 aa10.51□□□□□ -0.73
LSM4-206ENST00000600289 GAGE12HA6NDE8 117 aa10.51□□□□□ -0.73
LSM4-206ENST00000600289 CNBPP62633 177 aaKnown RBP10.51□□□□□ -0.73
LSM4-206ENST00000600289 IGKV3OR2-268A0A0C4DH90 116 aa10.5□□□□□ -0.73
LSM4-206ENST00000600289 CCL25O15444 150 aa10.5□□□□□ -0.73
LSM4-206ENST00000600289 S100PP25815 95 aa10.5□□□□□ -0.73
LSM4-206ENST00000600289 FOXI1Q12951 378 aa10.49□□□□□ -0.73
LSM4-206ENST00000600289 Q5VSD8 79 aa10.49□□□□□ -0.73
LSM4-206ENST00000600289 CFAP161Q6P656 301 aa10.49□□□□□ -0.73
LSM4-206ENST00000600289 C15orf56Q8N910 161 aa10.49□□□□□ -0.73
LSM4-206ENST00000600289 C9orf163Q8N9P6 203 aa10.49□□□□□ -0.73
LSM4-206ENST00000600289 MAP1LC3AQ9H492 121 aa10.49□□□□□ -0.73
LSM4-206ENST00000600289 SPANXA1Q9NS26 97 aa10.49□□□□□ -0.73
LSM4-206ENST00000600289 FAM30AQ9NZY2 134 aa10.49□□□□□ -0.73
LSM4-206ENST00000600289 K7EMI3 77 aa10.48□□□□□ -0.73
LSM4-206ENST00000600289 SS18Q15532 418 aa10.48□□□□□ -0.73
LSM4-206ENST00000600289 COX19Q49B96 90 aa10.48□□□□□ -0.73
LSM4-206ENST00000600289 RAB5AP20339 215 aa10.47□□□□□ -0.73
LSM4-206ENST00000600289 RPL39P62891 51 aaKnown RBP10.47□□□□□ -0.73
LSM4-206ENST00000600289 MRPS36P82909 103 aaKnown RBP10.47□□□□□ -0.73
LSM4-206ENST00000600289 Q8N8P6 123 aa10.47□□□□□ -0.73
LSM4-206ENST00000600289 GNB1LQ9BYB4 327 aa10.47□□□□□ -0.73
LSM4-206ENST00000600289 GVQW2A0A096LPI5 108 aaPredicted RBP10.46□□□□□ -0.73
LSM4-206ENST00000600289 hDV102S1A0JD36 115 aa10.46□□□□□ -0.73
LSM4-206ENST00000600289 C1orf196B1AJZ1 125 aa10.46□□□□□ -0.73
LSM4-206ENST00000600289 LINC01620Q4KN68 170 aa10.46□□□□□ -0.73
LSM4-206ENST00000600289 CD164L2Q6UWJ8 174 aa10.46□□□□□ -0.73
LSM4-206ENST00000600289 Q6ZUT4 128 aa10.46□□□□□ -0.73
LSM4-206ENST00000600289 XCL1P47992 114 aa10.45□□□□□ -0.74
LSM4-206ENST00000600289 FAM104AQ969W3 186 aa10.45□□□□□ -0.74
LSM4-206ENST00000600289 RPS10P5Q9NQ39 176 aa10.45□□□□□ -0.74
LSM4-206ENST00000600289 AP5S1Q9NUS5 200 aa10.45□□□□□ -0.74
LSM4-206ENST00000600289 PYGO1Q9Y3Y4 419 aa10.45□□□□□ -0.74
LSM4-206ENST00000600289 MT-ND6P03923 174 aa10.44□□□□□ -0.74
LSM4-206ENST00000600289 NXT2Q9NPJ8 142 aaKnown RBP10.44□□□□□ -0.74
LSM4-206ENST00000600289 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.43□□□□□ -0.74
LSM4-206ENST00000600289 IGHV1-58A0A0C4DH39 117 aa10.43□□□□□ -0.74
LSM4-206ENST00000600289 LOC389332A0A1B0GUA5 103 aa10.43□□□□□ -0.74
LSM4-206ENST00000600289 SLPIP03973 132 aa10.43□□□□□ -0.74
LSM4-206ENST00000600289 NDUFA5Q16718 116 aa10.43□□□□□ -0.74
LSM4-206ENST00000600289 ORMDL2Q53FV1 153 aa10.43□□□□□ -0.74
LSM4-206ENST00000600289 SVBPQ8N300 66 aa10.43□□□□□ -0.74
LSM4-206ENST00000600289 J3QL48 77 aa10.42□□□□□ -0.74
LSM4-206ENST00000600289 SNAPINO95295 136 aa10.42□□□□□ -0.74
LSM4-206ENST00000600289 APOC3P02656 99 aa10.42□□□□□ -0.74
LSM4-206ENST00000600289 IFI27P40305 119 aaPredicted RBP10.42□□□□□ -0.74
LSM4-206ENST00000600289 RNASE13Q5GAN3 156 aaKnown RBP10.42□□□□□ -0.74
LSM4-206ENST00000600289 CHAC1Q9BUX1 264 aa10.42□□□□□ -0.74
LSM4-206ENST00000600289 NPSP0C0P6 89 aa10.41□□□□□ -0.74
LSM4-206ENST00000600289 HAMPP81172 84 aa10.41□□□□□ -0.74
LSM4-206ENST00000600289 SDIM1Q6ZPB5 146 aa10.41□□□□□ -0.74
LSM4-206ENST00000600289 SCXQ7RTU7 201 aa10.41□□□□□ -0.74
LSM4-206ENST00000600289 TRAV13-1A0A0B4J241 112 aa10.4□□□□□ -0.74
LSM4-206ENST00000600289 CYSLTR1Q9Y271 337 aa10.4□□□□□ -0.74
LSM4-206ENST00000600289 IGHV3-64A0A075B6Q5 118 aa10.39□□□□□ -0.75
LSM4-206ENST00000600289 COX7A2LO14548 114 aa10.39□□□□□ -0.75
LSM4-206ENST00000600289 G0S2P27469 103 aa10.39□□□□□ -0.75
LSM4-206ENST00000600289 CIRBPQ14011 172 aaKnown RBP10.39□□□□□ -0.75
LSM4-206ENST00000600289 KIAA1644Q3SXP7 199 aa10.39□□□□□ -0.75
LSM4-206ENST00000600289 HIGD2BQ4VC39 106 aa10.39□□□□□ -0.75
LSM4-206ENST00000600289 C2orf66Q6UXQ4 117 aa10.39□□□□□ -0.75
LSM4-206ENST00000600289 ALKBH7Q9BT30 221 aaPredicted RBP10.39□□□□□ -0.75
LSM4-206ENST00000600289 IGLV4-3A0A075B6K6 122 aa10.38□□□□□ -0.75
LSM4-206ENST00000600289 LINC01546A6NGU7 62 aa10.38□□□□□ -0.75
LSM4-206ENST00000600289 FAM229AH3BQW9 127 aa10.38□□□□□ -0.75
LSM4-206ENST00000600289 SMR3BP02814 79 aaPredicted RBP10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 125.2 ms