RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 ABCA13Q86UQ4 5058 aa10.48□□□□□ -0.73
TRIM28-213ENST00000598355 TCAPO15273 167 aa10.48□□□□□ -0.73
TRIM28-213ENST00000598355 FCER1GP30273 86 aa10.48□□□□□ -0.73
TRIM28-213ENST00000598355 C10orf91Q5T1B1 145 aa10.48□□□□□ -0.73
TRIM28-213ENST00000598355 ORMDL3Q8N138 153 aa10.48□□□□□ -0.73
TRIM28-213ENST00000598355 CLRN3Q8NCR9 226 aa10.48□□□□□ -0.73
TRIM28-213ENST00000598355 BTF3L4Q96K17 158 aa10.48□□□□□ -0.73
TRIM28-213ENST00000598355 CDC42SE2Q9NRR3 84 aa10.48□□□□□ -0.73
TRIM28-213ENST00000598355 LINC01620Q4KN68 170 aa10.47□□□□□ -0.73
TRIM28-213ENST00000598355 DGAT2L7PQ6IED9 249 aa10.47□□□□□ -0.73
TRIM28-213ENST00000598355 TIMM21Q9BVV7 248 aa10.47□□□□□ -0.73
TRIM28-213ENST00000598355 CTDSP1Q9GZU7 261 aa10.47□□□□□ -0.73
TRIM28-213ENST00000598355 UBE2D4Q9Y2X8 147 aa10.47□□□□□ -0.73
TRIM28-213ENST00000598355 PRSS47A8MTI9 375 aa10.46□□□□□ -0.73
TRIM28-213ENST00000598355 CNBPP62633 177 aaKnown RBP10.46□□□□□ -0.73
TRIM28-213ENST00000598355 C15orf56Q8N910 161 aa10.46□□□□□ -0.73
TRIM28-213ENST00000598355 CHCHD10Q8WYQ3 142 aaPredicted RBP10.46□□□□□ -0.73
TRIM28-213ENST00000598355 TMEM101Q96IK0 257 aa10.46□□□□□ -0.73
TRIM28-213ENST00000598355 LAMTOR2Q9Y2Q5 125 aa10.46□□□□□ -0.73
TRIM28-213ENST00000598355 CARHSP1Q9Y2V2 147 aaKnown RBP10.46□□□□□ -0.73
TRIM28-213ENST00000598355 TRAV9-1A0A075B6T8 112 aa10.45□□□□□ -0.74
TRIM28-213ENST00000598355 LINC00959A0A1B0GUT2 108 aa10.45□□□□□ -0.74
TRIM28-213ENST00000598355 C9orf163Q8N9P6 203 aa10.45□□□□□ -0.74
TRIM28-213ENST00000598355 PRELID3AQ96N28 172 aa10.45□□□□□ -0.74
TRIM28-213ENST00000598355 FAT1Q14517 4588 aa10.45□□□□□ -0.74
TRIM28-213ENST00000598355 IGKV3OR2-268A0A0C4DH90 116 aa10.44□□□□□ -0.74
TRIM28-213ENST00000598355 GAGE12HA6NDE8 117 aa10.44□□□□□ -0.74
TRIM28-213ENST00000598355 HAMPP81172 84 aa10.44□□□□□ -0.74
TRIM28-213ENST00000598355 FOXI1Q12951 378 aa10.44□□□□□ -0.74
TRIM28-213ENST00000598355 TMEM136Q6ZRR5 245 aa10.44□□□□□ -0.74
TRIM28-213ENST00000598355 ZNF664Q8N3J9 261 aa10.44□□□□□ -0.74
TRIM28-213ENST00000598355 VPS13BQ7Z7G8 4022 aa10.44□□□□□ -0.74
TRIM28-213ENST00000598355 SMAGPQ0VAQ4 97 aa10.43□□□□□ -0.74
TRIM28-213ENST00000598355 FAM104AQ969W3 186 aa10.43□□□□□ -0.74
TRIM28-213ENST00000598355 TMEM18Q96B42 140 aa10.42□□□□□ -0.74
TRIM28-213ENST00000598355 GVQW2A0A096LPI5 108 aaPredicted RBP10.41□□□□□ -0.74
TRIM28-213ENST00000598355 EPM2AB3EWF7 344 aa10.41□□□□□ -0.74
TRIM28-213ENST00000598355 CCL25O15444 150 aa10.41□□□□□ -0.74
TRIM28-213ENST00000598355 SLPIP03973 132 aa10.41□□□□□ -0.74
TRIM28-213ENST00000598355 RPL39P62891 51 aaKnown RBP10.41□□□□□ -0.74
TRIM28-213ENST00000598355 Q6ZUT4 128 aa10.41□□□□□ -0.74
TRIM28-213ENST00000598355 hDV102S1A0JD36 115 aa10.4□□□□□ -0.74
TRIM28-213ENST00000598355 Q5VSD8 79 aa10.4□□□□□ -0.74
TRIM28-213ENST00000598355 SCXQ7RTU7 201 aa10.4□□□□□ -0.74
TRIM28-213ENST00000598355 CHAC1Q9BUX1 264 aa10.4□□□□□ -0.74
TRIM28-213ENST00000598355 SPANXA1Q9NS26 97 aa10.4□□□□□ -0.74
TRIM28-213ENST00000598355 XCL1P47992 114 aa10.39□□□□□ -0.75
TRIM28-213ENST00000598355 MRPS36P82909 103 aaKnown RBP10.39□□□□□ -0.75
TRIM28-213ENST00000598355 RHEBQ15382 184 aa10.39□□□□□ -0.75
TRIM28-213ENST00000598355 SS18Q15532 418 aa10.39□□□□□ -0.75
TRIM28-213ENST00000598355 CFAP161Q6P656 301 aa10.39□□□□□ -0.75
TRIM28-213ENST00000598355 CD164L2Q6UWJ8 174 aa10.39□□□□□ -0.75
TRIM28-213ENST00000598355 MAP1LC3AQ9H492 121 aa10.39□□□□□ -0.75
TRIM28-213ENST00000598355 SMR3BP02814 79 aaPredicted RBP10.38□□□□□ -0.75
TRIM28-213ENST00000598355 SDIM1Q6ZPB5 146 aa10.38□□□□□ -0.75
TRIM28-213ENST00000598355 C1orf196B1AJZ1 125 aa10.37□□□□□ -0.75
TRIM28-213ENST00000598355 CIRBPQ14011 172 aaKnown RBP10.37□□□□□ -0.75
TRIM28-213ENST00000598355 RNASE13Q5GAN3 156 aaKnown RBP10.37□□□□□ -0.75
TRIM28-213ENST00000598355 Q8N8P6 123 aa10.37□□□□□ -0.75
TRIM28-213ENST00000598355 SRRM2Q9UQ35 2752 aaKnown RBP10.36□□□□□ -0.75
TRIM28-213ENST00000598355 K7EMI3 77 aa10.36□□□□□ -0.75
TRIM28-213ENST00000598355 CIRBP-AS1Q8TBR5 109 aa10.36□□□□□ -0.75
TRIM28-213ENST00000598355 AP5S1Q9NUS5 200 aa10.36□□□□□ -0.75
TRIM28-213ENST00000598355 PYGO1Q9Y3Y4 419 aa10.36□□□□□ -0.75
TRIM28-213ENST00000598355 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.35□□□□□ -0.75
TRIM28-213ENST00000598355 IGHV1-58A0A0C4DH39 117 aa10.35□□□□□ -0.75
TRIM28-213ENST00000598355 RAB5AP20339 215 aa10.35□□□□□ -0.75
TRIM28-213ENST00000598355 S100PP25815 95 aa10.35□□□□□ -0.75
TRIM28-213ENST00000598355 HIGD2BQ4VC39 106 aa10.35□□□□□ -0.75
TRIM28-213ENST00000598355 GNB1LQ9BYB4 327 aa10.35□□□□□ -0.75
TRIM28-213ENST00000598355 PANO1I0J062 215 aa10.34□□□□□ -0.75
TRIM28-213ENST00000598355 NXT2Q9NPJ8 142 aaKnown RBP10.34□□□□□ -0.75
TRIM28-213ENST00000598355 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.34□□□□□ -0.75
TRIM28-213ENST00000598355 IGHV3-64A0A075B6Q5 118 aa10.33□□□□□ -0.76
TRIM28-213ENST00000598355 TRAV13-1A0A0B4J241 112 aa10.33□□□□□ -0.76
TRIM28-213ENST00000598355 LOC389332A0A1B0GUA5 103 aa10.33□□□□□ -0.76
TRIM28-213ENST00000598355 FAM229AH3BQW9 127 aa10.33□□□□□ -0.76
TRIM28-213ENST00000598355 COX19Q49B96 90 aa10.33□□□□□ -0.76
TRIM28-213ENST00000598355 IGLV4-3A0A075B6K6 122 aa10.32□□□□□ -0.76
TRIM28-213ENST00000598355 MT-ND6P03923 174 aa10.32□□□□□ -0.76
TRIM28-213ENST00000598355 IFI27P40305 119 aaPredicted RBP10.32□□□□□ -0.76
TRIM28-213ENST00000598355 LINC00528Q8N1L1 170 aa10.32□□□□□ -0.76
TRIM28-213ENST00000598355 OPRPNQ99935 248 aaPredicted RBP10.32□□□□□ -0.76
TRIM28-213ENST00000598355 RPS10P5Q9NQ39 176 aa10.32□□□□□ -0.76
TRIM28-213ENST00000598355 IGHV3OR16-9A0A0B4J2B5 98 aa10.31□□□□□ -0.76
TRIM28-213ENST00000598355 COX7A2LO14548 114 aa10.31□□□□□ -0.76
TRIM28-213ENST00000598355 NPSP0C0P6 89 aa10.31□□□□□ -0.76
TRIM28-213ENST00000598355 KIAA1644Q3SXP7 199 aa10.31□□□□□ -0.76
TRIM28-213ENST00000598355 ORMDL2Q53FV1 153 aa10.31□□□□□ -0.76
TRIM28-213ENST00000598355 CYSLTR1Q9Y271 337 aa10.31□□□□□ -0.76
TRIM28-213ENST00000598355 FLG2Q5D862 2391 aaPredicted RBP10.31□□□□□ -0.76
TRIM28-213ENST00000598355 LINC01546A6NGU7 62 aa10.3□□□□□ -0.76
TRIM28-213ENST00000598355 KRTAP10-4P60372 401 aaPredicted RBP10.3□□□□□ -0.76
TRIM28-213ENST00000598355 C2orf66Q6UXQ4 117 aa10.3□□□□□ -0.76
TRIM28-213ENST00000598355 IFITM10A6NMD0 228 aa10.29□□□□□ -0.76
TRIM28-213ENST00000598355 APOC3P02656 99 aa10.29□□□□□ -0.76
TRIM28-213ENST00000598355 LINC00173Q6ZV60 143 aa10.29□□□□□ -0.76
TRIM28-213ENST00000598355 SVBPQ8N300 66 aa10.29□□□□□ -0.76
TRIM28-213ENST00000598355 SPACA4Q8TDM5 124 aa10.29□□□□□ -0.76
TRIM28-213ENST00000598355 TMEM141Q96I45 108 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 89.3 ms