RNA–Protein interactions for RNA: ENST00000594298.5

SHKBP1-203, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 716 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-203ENST00000594298 C20orf203Q8NBC4 194 aa11.46□□□□□ -0.57
SHKBP1-203ENST00000594298 CHAC1Q9BUX1 264 aa11.46□□□□□ -0.57
SHKBP1-203ENST00000594298 TMEM242Q9NWH2 141 aa11.46□□□□□ -0.57
SHKBP1-203ENST00000594298 IGLV4-60A0A075B6I1 120 aa11.45□□□□□ -0.58
SHKBP1-203ENST00000594298 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.45□□□□□ -0.58
SHKBP1-203ENST00000594298 IGKV2-29A2NJV5 120 aaPredicted RBP11.45□□□□□ -0.58
SHKBP1-203ENST00000594298 PHOX2AO14813 284 aa11.45□□□□□ -0.58
SHKBP1-203ENST00000594298 ZNF25P17030 456 aaPredicted RBP11.45□□□□□ -0.58
SHKBP1-203ENST00000594298 SMAGPQ0VAQ4 97 aa11.45□□□□□ -0.58
SHKBP1-203ENST00000594298 TMEM101Q96IK0 257 aa11.45□□□□□ -0.58
SHKBP1-203ENST00000594298 D6R8Y8 96 aa11.44□□□□□ -0.58
SHKBP1-203ENST00000594298 TNFRSF6BO95407 300 aa11.44□□□□□ -0.58
SHKBP1-203ENST00000594298 FGF6P10767 208 aa11.44□□□□□ -0.58
SHKBP1-203ENST00000594298 ESDP10768 282 aa11.44□□□□□ -0.58
SHKBP1-203ENST00000594298 RPL32P62910 135 aaKnown RBP11.44□□□□□ -0.58
SHKBP1-203ENST00000594298 C14orf177Q52M58 125 aa11.44□□□□□ -0.58
SHKBP1-203ENST00000594298 CLPSL2Q6UWE3 100 aa11.44□□□□□ -0.58
SHKBP1-203ENST00000594298 ORMDL3Q8N138 153 aa11.44□□□□□ -0.58
SHKBP1-203ENST00000594298 S100PP25815 95 aa11.43□□□□□ -0.58
SHKBP1-203ENST00000594298 C10orf91Q5T1B1 145 aa11.43□□□□□ -0.58
SHKBP1-203ENST00000594298 SERTAD4-AS1Q5TG53 156 aa11.43□□□□□ -0.58
SHKBP1-203ENST00000594298 TMEM136Q6ZRR5 245 aa11.43□□□□□ -0.58
SHKBP1-203ENST00000594298 CIRBP-AS1Q8TBR5 109 aa11.43□□□□□ -0.58
SHKBP1-203ENST00000594298 HMCN2Q8NDA2 5059 aa11.42□□□□□ -0.58
SHKBP1-203ENST00000594298 TRAV9-1A0A075B6T8 112 aa11.42□□□□□ -0.58
SHKBP1-203ENST00000594298 C7orf77A4D0Y5 90 aa11.42□□□□□ -0.58
SHKBP1-203ENST00000594298 TMEM18Q96B42 140 aa11.42□□□□□ -0.58
SHKBP1-203ENST00000594298 OXTP01178 125 aa11.41□□□□□ -0.58
SHKBP1-203ENST00000594298 OR5A1Q8NGJ0 315 aa11.41□□□□□ -0.58
SHKBP1-203ENST00000594298 PRELID3AQ96N28 172 aa11.41□□□□□ -0.58
SHKBP1-203ENST00000594298 LAMTOR2Q9Y2Q5 125 aa11.41□□□□□ -0.58
SHKBP1-203ENST00000594298 CARHSP1Q9Y2V2 147 aaKnown RBP11.41□□□□□ -0.58
SHKBP1-203ENST00000594298 HLA-DQA1P01909 254 aa11.4□□□□□ -0.58
SHKBP1-203ENST00000594298 DGAT2L7PQ6IED9 249 aa11.4□□□□□ -0.58
SHKBP1-203ENST00000594298 LRP1Q07954 4544 aaKnown RBP11.39□□□□□ -0.59
SHKBP1-203ENST00000594298 IGLV10-54A0A075B6I4 117 aa11.39□□□□□ -0.59
SHKBP1-203ENST00000594298 NPYP01303 97 aa11.39□□□□□ -0.59
SHKBP1-203ENST00000594298 RHEBQ15382 184 aa11.39□□□□□ -0.59
SHKBP1-203ENST00000594298 MRPL52Q86TS9 123 aaKnown RBP11.39□□□□□ -0.59
SHKBP1-203ENST00000594298 SMIM2Q9BVW6 85 aa11.39□□□□□ -0.59
SHKBP1-203ENST00000594298 NDUFA5Q16718 116 aa11.38□□□□□ -0.59
SHKBP1-203ENST00000594298 CLRN3Q8NCR9 226 aa11.38□□□□□ -0.59
SHKBP1-203ENST00000594298 IGKV3OR2-268A0A0C4DH90 116 aa11.37□□□□□ -0.59
SHKBP1-203ENST00000594298 RAB5AP20339 215 aa11.37□□□□□ -0.59
SHKBP1-203ENST00000594298 KRTAP26-1Q6PEX3 210 aa11.37□□□□□ -0.59
SHKBP1-203ENST00000594298 RPS10P5Q9NQ39 176 aa11.37□□□□□ -0.59
SHKBP1-203ENST00000594298 USP17L23D6RBM5 183 aa11.36□□□□□ -0.59
SHKBP1-203ENST00000594298 COX19Q49B96 90 aa11.36□□□□□ -0.59
SHKBP1-203ENST00000594298 MAP1LC3AQ9H492 121 aa11.36□□□□□ -0.59
SHKBP1-203ENST00000594298 CSDC2Q9Y534 153 aaKnown RBP11.36□□□□□ -0.59
SHKBP1-203ENST00000594298 PRSS47A8MTI9 375 aa11.35□□□□□ -0.59
SHKBP1-203ENST00000594298 ZNF664Q8N3J9 261 aa11.35□□□□□ -0.59
SHKBP1-203ENST00000594298 CDC42SE2Q9NRR3 84 aa11.35□□□□□ -0.59
SHKBP1-203ENST00000594298 FAT3Q8TDW7 4589 aa11.35□□□□□ -0.59
SHKBP1-203ENST00000594298 APOC3P02656 99 aa11.34□□□□□ -0.59
SHKBP1-203ENST00000594298 CFAP161Q6P656 301 aa11.34□□□□□ -0.59
SHKBP1-203ENST00000594298 TIMM21Q9BVV7 248 aa11.34□□□□□ -0.59
SHKBP1-203ENST00000594298 GAGE12HA6NDE8 117 aa11.33□□□□□ -0.6
SHKBP1-203ENST00000594298 SNAPINO95295 136 aa11.33□□□□□ -0.6
SHKBP1-203ENST00000594298 SS18Q15532 418 aa11.33□□□□□ -0.6
SHKBP1-203ENST00000594298 SVBPQ8N300 66 aa11.33□□□□□ -0.6
SHKBP1-203ENST00000594298 CHCHD10Q8WYQ3 142 aaPredicted RBP11.33□□□□□ -0.6
SHKBP1-203ENST00000594298 GNB1LQ9BYB4 327 aa11.33□□□□□ -0.6
SHKBP1-203ENST00000594298 UBE2D4Q9Y2X8 147 aa11.33□□□□□ -0.6
SHKBP1-203ENST00000594298 LOC389332A0A1B0GUA5 103 aa11.32□□□□□ -0.6
SHKBP1-203ENST00000594298 CCL25O15444 150 aa11.32□□□□□ -0.6
SHKBP1-203ENST00000594298 LINC00959A0A1B0GUT2 108 aa11.31□□□□□ -0.6
SHKBP1-203ENST00000594298 SPANXA1Q9NS26 97 aa11.31□□□□□ -0.6
SHKBP1-203ENST00000594298 K7EMI3 77 aa11.3□□□□□ -0.6
SHKBP1-203ENST00000594298 PRSS1P07477 247 aa11.3□□□□□ -0.6
SHKBP1-203ENST00000594298 RPL37AP61513 92 aaKnown RBP11.3□□□□□ -0.6
SHKBP1-203ENST00000594298 Q8N8P6 123 aa11.3□□□□□ -0.6
SHKBP1-203ENST00000594298 AP5S1Q9NUS5 200 aa11.3□□□□□ -0.6
SHKBP1-203ENST00000594298 MT-ND6P03923 174 aa11.29□□□□□ -0.6
SHKBP1-203ENST00000594298 NXT2Q9NPJ8 142 aaKnown RBP11.29□□□□□ -0.6
SHKBP1-203ENST00000594298 UBR4Q5T4S7 5183 aa11.29□□□□□ -0.6
SHKBP1-203ENST00000594298 hDV102S1A0JD36 115 aa11.28□□□□□ -0.6
SHKBP1-203ENST00000594298 C1orf196B1AJZ1 125 aa11.28□□□□□ -0.6
SHKBP1-203ENST00000594298 XCL1P47992 114 aa11.28□□□□□ -0.6
SHKBP1-203ENST00000594298 RPL39P62891 51 aaKnown RBP11.28□□□□□ -0.6
SHKBP1-203ENST00000594298 ORMDL2Q53FV1 153 aa11.28□□□□□ -0.6
SHKBP1-203ENST00000594298 C9orf163Q8N9P6 203 aa11.28□□□□□ -0.6
SHKBP1-203ENST00000594298 PLA2G2DQ9UNK4 145 aa11.28□□□□□ -0.6
SHKBP1-203ENST00000594298 G0S2P27469 103 aa11.27□□□□□ -0.61
SHKBP1-203ENST00000594298 IFI27P40305 119 aaPredicted RBP11.27□□□□□ -0.61
SHKBP1-203ENST00000594298 KIAA1644Q3SXP7 199 aa11.27□□□□□ -0.61
SHKBP1-203ENST00000594298 CD164L2Q6UWJ8 174 aa11.27□□□□□ -0.61
SHKBP1-203ENST00000594298 MRPS36P82909 103 aaKnown RBP11.26□□□□□ -0.61
SHKBP1-203ENST00000594298 FOXI1Q12951 378 aa11.26□□□□□ -0.61
SHKBP1-203ENST00000594298 PKHD1L1Q86WI1 4243 aa11.26□□□□□ -0.61
SHKBP1-203ENST00000594298 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.25□□□□□ -0.61
SHKBP1-203ENST00000594298 HNRNPA3P51991 378 aaKnown RBP11.25□□□□□ -0.61
SHKBP1-203ENST00000594298 FABP9Q0Z7S8 132 aa11.25□□□□□ -0.61
SHKBP1-203ENST00000594298 Q6ZUT4 128 aa11.25□□□□□ -0.61
SHKBP1-203ENST00000594298 CYSLTR1Q9Y271 337 aa11.25□□□□□ -0.61
SHKBP1-203ENST00000594298 PYGO1Q9Y3Y4 419 aa11.25□□□□□ -0.61
SHKBP1-203ENST00000594298 TRAV13-1A0A0B4J241 112 aa11.24□□□□□ -0.61
SHKBP1-203ENST00000594298 CNBPP62633 177 aaKnown RBP11.24□□□□□ -0.61
SHKBP1-203ENST00000594298 RNASE13Q5GAN3 156 aaKnown RBP11.24□□□□□ -0.61
SHKBP1-203ENST00000594298 MRPL18Q9H0U6 180 aaKnown RBP11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms