RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 KIR2DL4Q99706 377 aa9.84□□□□□ -0.83
TRIM28-203ENST00000593582 LINC00862A6NCI5 91 aa9.83□□□□□ -0.84
TRIM28-203ENST00000593582 S100A8P05109 93 aa9.83□□□□□ -0.84
TRIM28-203ENST00000593582 SDIM1Q6ZPB5 146 aa9.83□□□□□ -0.84
TRIM28-203ENST00000593582 MRPL52Q86TS9 123 aaKnown RBP9.83□□□□□ -0.84
TRIM28-203ENST00000593582 C15orf56Q8N910 161 aa9.83□□□□□ -0.84
TRIM28-203ENST00000593582 IGHV3-64A0A075B6Q5 118 aa9.82□□□□□ -0.84
TRIM28-203ENST00000593582 F8W036 122 aa9.82□□□□□ -0.84
TRIM28-203ENST00000593582 CKS2P33552 79 aa9.82□□□□□ -0.84
TRIM28-203ENST00000593582 XCL1P47992 114 aa9.82□□□□□ -0.84
TRIM28-203ENST00000593582 HBBP68871 147 aa9.82□□□□□ -0.84
TRIM28-203ENST00000593582 SMAGPQ0VAQ4 97 aa9.82□□□□□ -0.84
TRIM28-203ENST00000593582 MRPL54Q6P161 138 aaKnown RBP9.82□□□□□ -0.84
TRIM28-203ENST00000593582 LINC00959A0A1B0GUT2 108 aa9.81□□□□□ -0.84
TRIM28-203ENST00000593582 SLPIP03973 132 aa9.81□□□□□ -0.84
TRIM28-203ENST00000593582 ZNF664Q8N3J9 261 aa9.81□□□□□ -0.84
TRIM28-203ENST00000593582 C20orf78Q9BR46 151 aa9.81□□□□□ -0.84
TRIM28-203ENST00000593582 CDC42SE2Q9NRR3 84 aa9.81□□□□□ -0.84
TRIM28-203ENST00000593582 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.81□□□□□ -0.84
TRIM28-203ENST00000593582 FLG2Q5D862 2391 aaPredicted RBP9.8□□□□□ -0.84
TRIM28-203ENST00000593582 TRBV24-1A0A075B6N3 115 aa9.8□□□□□ -0.84
TRIM28-203ENST00000593582 FOXI1Q12951 378 aa9.8□□□□□ -0.84
TRIM28-203ENST00000593582 SS18Q15532 418 aa9.8□□□□□ -0.84
TRIM28-203ENST00000593582 HIGD2BQ4VC39 106 aa9.8□□□□□ -0.84
TRIM28-203ENST00000593582 DMBT1Q9UGM3 2413 aaPredicted RBP9.8□□□□□ -0.84
TRIM28-203ENST00000593582 HERC1Q15751 4861 aa9.79□□□□□ -0.84
TRIM28-203ENST00000593582 A0A1B0GXF2 115 aa9.79□□□□□ -0.84
TRIM28-203ENST00000593582 CCL25O15444 150 aa9.79□□□□□ -0.84
TRIM28-203ENST00000593582 CSDC2Q9Y534 153 aaKnown RBP9.79□□□□□ -0.84
TRIM28-203ENST00000593582 GVQW2A0A096LPI5 108 aaPredicted RBP9.78□□□□□ -0.84
TRIM28-203ENST00000593582 D6R8Y8 96 aa9.78□□□□□ -0.84
TRIM28-203ENST00000593582 PANO1I0J062 215 aa9.78□□□□□ -0.84
TRIM28-203ENST00000593582 TCAPO15273 167 aa9.78□□□□□ -0.84
TRIM28-203ENST00000593582 TNFRSF6BO95407 300 aa9.78□□□□□ -0.84
TRIM28-203ENST00000593582 RPL32P62910 135 aaKnown RBP9.78□□□□□ -0.84
TRIM28-203ENST00000593582 PNRC1Q12796 327 aaPredicted RBP9.78□□□□□ -0.84
TRIM28-203ENST00000593582 ATP5L2Q7Z4Y8 100 aa9.78□□□□□ -0.84
TRIM28-203ENST00000593582 TMEM18Q96B42 140 aa9.78□□□□□ -0.84
TRIM28-203ENST00000593582 DPH3Q96FX2 82 aa9.78□□□□□ -0.84
TRIM28-203ENST00000593582 UBE2D4Q9Y2X8 147 aa9.78□□□□□ -0.84
TRIM28-203ENST00000593582 PPBPP02775 128 aa9.77□□□□□ -0.85
TRIM28-203ENST00000593582 CD164L2Q6UWJ8 174 aa9.77□□□□□ -0.85
TRIM28-203ENST00000593582 IGHV1-58A0A0C4DH39 117 aa9.76□□□□□ -0.85
TRIM28-203ENST00000593582 C1orf196B1AJZ1 125 aa9.76□□□□□ -0.85
TRIM28-203ENST00000593582 CIRBPQ14011 172 aaKnown RBP9.76□□□□□ -0.85
TRIM28-203ENST00000593582 SMIM2Q9BVW6 85 aa9.76□□□□□ -0.85
TRIM28-203ENST00000593582 PHOX2AO14813 284 aa9.75□□□□□ -0.85
TRIM28-203ENST00000593582 MT-ND4LP03901 98 aa9.75□□□□□ -0.85
TRIM28-203ENST00000593582 KRTAP10-4P60372 401 aaPredicted RBP9.75□□□□□ -0.85
TRIM28-203ENST00000593582 RPL37AP61513 92 aaKnown RBP9.75□□□□□ -0.85
TRIM28-203ENST00000593582 ANAPC16Q96DE5 110 aa9.75□□□□□ -0.85
TRIM28-203ENST00000593582 TIMM21Q9BVV7 248 aa9.75□□□□□ -0.85
TRIM28-203ENST00000593582 J3QL48 77 aa9.74□□□□□ -0.85
TRIM28-203ENST00000593582 CHTF8P0CG12 524 aa9.74□□□□□ -0.85
TRIM28-203ENST00000593582 COX6A2Q02221 97 aa9.74□□□□□ -0.85
TRIM28-203ENST00000593582 RNASE13Q5GAN3 156 aaKnown RBP9.74□□□□□ -0.85
TRIM28-203ENST00000593582 CLLU1Q5K131 121 aa9.74□□□□□ -0.85
TRIM28-203ENST00000593582 ORMDL3Q8N138 153 aa9.74□□□□□ -0.85
TRIM28-203ENST00000593582 TRAV13-1A0A0B4J241 112 aa9.73□□□□□ -0.85
TRIM28-203ENST00000593582 NPYP01303 97 aa9.73□□□□□ -0.85
TRIM28-203ENST00000593582 TMEM136Q6ZRR5 245 aa9.73□□□□□ -0.85
TRIM28-203ENST00000593582 SPACA4Q8TDM5 124 aa9.73□□□□□ -0.85
TRIM28-203ENST00000593582 A0A087WYN8 130 aa9.72□□□□□ -0.85
TRIM28-203ENST00000593582 ZNF561-AS1K7EIQ3 104 aa9.72□□□□□ -0.85
TRIM28-203ENST00000593582 COX7A2LO14548 114 aa9.72□□□□□ -0.85
TRIM28-203ENST00000593582 MALP21145 153 aa9.72□□□□□ -0.85
TRIM28-203ENST00000593582 Q6ZUT4 128 aa9.72□□□□□ -0.85
TRIM28-203ENST00000593582 PRELID3AQ96N28 172 aa9.72□□□□□ -0.85
TRIM28-203ENST00000593582 KRTAP29-1A8MX34 341 aaPredicted RBP9.71□□□□□ -0.86
TRIM28-203ENST00000593582 RAB5AP20339 215 aa9.71□□□□□ -0.86
TRIM28-203ENST00000593582 RPL39P62891 51 aaKnown RBP9.71□□□□□ -0.86
TRIM28-203ENST00000593582 PRSS3P2Q8NHM4 247 aa9.71□□□□□ -0.86
TRIM28-203ENST00000593582 LINC00526Q96FQ7 95 aa9.71□□□□□ -0.86
TRIM28-203ENST00000593582 SPANXA1Q9NS26 97 aa9.71□□□□□ -0.86
TRIM28-203ENST00000593582 PKIGQ9Y2B9 76 aa9.71□□□□□ -0.86
TRIM28-203ENST00000593582 IGKV2-24A0A0C4DH68 120 aa9.7□□□□□ -0.86
TRIM28-203ENST00000593582 CARD19Q96LW7 228 aa9.7□□□□□ -0.86
TRIM28-203ENST00000593582 MAJINQ3KP22 176 aa9.69□□□□□ -0.86
TRIM28-203ENST00000593582 PLAC8Q9NZF1 115 aa9.69□□□□□ -0.86
TRIM28-203ENST00000593582 LAMTOR2Q9Y2Q5 125 aa9.69□□□□□ -0.86
TRIM28-203ENST00000593582 MRPS36P82909 103 aaKnown RBP9.68□□□□□ -0.86
TRIM28-203ENST00000593582 SYCNQ0VAF6 134 aa9.68□□□□□ -0.86
TRIM28-203ENST00000593582 UQCC3Q6UW78 93 aa9.68□□□□□ -0.86
TRIM28-203ENST00000593582 LINC00474Q9P2X8 69 aa9.68□□□□□ -0.86
TRIM28-203ENST00000593582 APOMO95445 188 aa9.67□□□□□ -0.86
TRIM28-203ENST00000593582 C5orf38Q86SI9 138 aa9.67□□□□□ -0.86
TRIM28-203ENST00000593582 C7orf33Q8WU49 177 aa9.67□□□□□ -0.86
TRIM28-203ENST00000593582 MAP1LC3AQ9H492 121 aa9.67□□□□□ -0.86
TRIM28-203ENST00000593582 IGLV4-69A0A075B6H9 119 aa9.66□□□□□ -0.86
TRIM28-203ENST00000593582 A0A096LNI7 61 aa9.66□□□□□ -0.86
TRIM28-203ENST00000593582 LOC389332A0A1B0GUA5 103 aa9.66□□□□□ -0.86
TRIM28-203ENST00000593582 PRSS47A8MTI9 375 aa9.66□□□□□ -0.86
TRIM28-203ENST00000593582 IFI27P40305 119 aaPredicted RBP9.66□□□□□ -0.86
TRIM28-203ENST00000593582 STPG4Q8N801 248 aa9.66□□□□□ -0.86
TRIM28-203ENST00000593582 IMMP2LQ96T52 175 aa9.66□□□□□ -0.86
TRIM28-203ENST00000593582 OPRPNQ99935 248 aaPredicted RBP9.66□□□□□ -0.86
TRIM28-203ENST00000593582 LRP1Q07954 4544 aaKnown RBP9.65□□□□□ -0.86
TRIM28-203ENST00000593582 TMEM218A2RU14 115 aa9.65□□□□□ -0.86
TRIM28-203ENST00000593582 IFITM10A6NMD0 228 aa9.65□□□□□ -0.86
TRIM28-203ENST00000593582 OXTP01178 125 aa9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 78 ms