RNA–Protein interactions for RNA: ENST00000591126.5

SMAD4-212, Transcript of SMAD family member 4, humanhuman

TSL 1 (best)

Gene SMAD4, Length 4,970 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-212ENST00000591126 FAM19A1Q7Z5A9 133 aa4.54□□□□□ -1.68
SMAD4-212ENST00000591126 MRPL52Q86TS9 123 aaKnown RBP4.54□□□□□ -1.68
SMAD4-212ENST00000591126 SBSPONQ8IVN8 264 aa4.54□□□□□ -1.68
SMAD4-212ENST00000591126 C19orf73Q9NVV2 129 aa4.54□□□□□ -1.68
SMAD4-212ENST00000591126 M0QY20 66 aa4.54□□□□□ -1.68
SMAD4-212ENST00000591126 CYYR1Q96J86 154 aa4.54□□□□□ -1.68
SMAD4-212ENST00000591126 UBL5Q9BZL1 73 aa4.54□□□□□ -1.68
SMAD4-212ENST00000591126 RETNQ9HD89 108 aa4.54□□□□□ -1.68
SMAD4-212ENST00000591126 SPANXB1Q9NS25 103 aaPredicted RBP4.54□□□□□ -1.68
SMAD4-212ENST00000591126 TRBV27A0A0K0K1C4 114 aa4.54□□□□□ -1.68
SMAD4-212ENST00000591126 MTURNQ8N3F0 131 aa4.54□□□□□ -1.68
SMAD4-212ENST00000591126 CSDC2Q9Y534 153 aaKnown RBP4.54□□□□□ -1.68
SMAD4-212ENST00000591126 ZNF462Q96JM2 2506 aa4.54□□□□□ -1.68
SMAD4-212ENST00000591126 TLN1Q9Y490 2541 aaKnown RBP4.54□□□□□ -1.68
SMAD4-212ENST00000591126 J3QL48 77 aa4.53□□□□□ -1.68
SMAD4-212ENST00000591126 LYPD5Q6UWN5 251 aa4.53□□□□□ -1.68
SMAD4-212ENST00000591126 DOCK11Q5JSL3 2073 aa4.53□□□□□ -1.68
SMAD4-212ENST00000591126 HIVEP3Q5T1R4 2406 aa4.53□□□□□ -1.68
SMAD4-212ENST00000591126 HIGD2BQ4VC39 106 aa4.53□□□□□ -1.68
SMAD4-212ENST00000591126 C1orf158Q8N1D5 194 aa4.53□□□□□ -1.68
SMAD4-212ENST00000591126 ZNF625Q96I27 306 aaPredicted RBP4.53□□□□□ -1.68
SMAD4-212ENST00000591126 LIMD2Q9BT23 127 aa4.53□□□□□ -1.68
SMAD4-212ENST00000591126 SONP18583 2426 aaKnown RBP4.53□□□□□ -1.68
SMAD4-212ENST00000591126 RPL39LQ96EH5 51 aaKnown RBP4.53□□□□□ -1.68
SMAD4-212ENST00000591126 WFDC10AQ9H1F0 79 aa4.53□□□□□ -1.68
SMAD4-212ENST00000591126 FHL2Q14192 279 aa4.53□□□□□ -1.68
SMAD4-212ENST00000591126 Q8IZM0 81 aa4.53□□□□□ -1.68
SMAD4-212ENST00000591126 DOPEY1Q5JWR5 2465 aa4.53□□□□□ -1.68
SMAD4-212ENST00000591126 JMJD7-PLA2G4BH0Y9G9 81 aa4.52□□□□□ -1.69
SMAD4-212ENST00000591126 NUPR1O60356 82 aa4.52□□□□□ -1.69
SMAD4-212ENST00000591126 DDTP30046 118 aa4.52□□□□□ -1.69
SMAD4-212ENST00000591126 COX8CQ7Z4L0 72 aa4.52□□□□□ -1.69
SMAD4-212ENST00000591126 TM2D3Q9BRN9 247 aa4.52□□□□□ -1.69
SMAD4-212ENST00000591126 REV3LO60673 3130 aa4.52□□□□□ -1.69
SMAD4-212ENST00000591126 K7EIL1 84 aa4.52□□□□□ -1.69
SMAD4-212ENST00000591126 C12orf74Q32Q52 190 aa4.52□□□□□ -1.69
SMAD4-212ENST00000591126 LINC01620Q4KN68 170 aa4.52□□□□□ -1.69
SMAD4-212ENST00000591126 MRPL35Q9NZE8 188 aaKnown RBP4.52□□□□□ -1.69
SMAD4-212ENST00000591126 MED13LQ71F56 2210 aa4.52□□□□□ -1.69
SMAD4-212ENST00000591126 KRTAP1-3Q8IUG1 177 aa4.52□□□□□ -1.69
SMAD4-212ENST00000591126 LINC00959A0A1B0GUT2 108 aa4.51□□□□□ -1.69
SMAD4-212ENST00000591126 B5MCH6 92 aa4.51□□□□□ -1.69
SMAD4-212ENST00000591126 TP53TG3Q9ULZ0 132 aa4.51□□□□□ -1.69
SMAD4-212ENST00000591126 RAI1Q7Z5J4 1906 aaPredicted RBP4.51□□□□□ -1.69
SMAD4-212ENST00000591126 GDF5OSQ5U4N7 250 aa4.51□□□□□ -1.69
SMAD4-212ENST00000591126 C2orf82Q6UX34 121 aa4.51□□□□□ -1.69
SMAD4-212ENST00000591126 SPANXCQ9NY87 97 aa4.51□□□□□ -1.69
SMAD4-212ENST00000591126 V9GYY9 64 aa4.51□□□□□ -1.69
SMAD4-212ENST00000591126 A0A0J9YXV3 536 aa4.51□□□□□ -1.69
SMAD4-212ENST00000591126 PRO1854Q9UHT4 67 aa4.51□□□□□ -1.69
SMAD4-212ENST00000591126 NCOA6Q14686 2063 aaPredicted RBP4.51□□□□□ -1.69
SMAD4-212ENST00000591126 PLAC8L1A1L4L8 177 aa4.5□□□□□ -1.69
SMAD4-212ENST00000591126 USP17L23D6RBM5 183 aa4.5□□□□□ -1.69
SMAD4-212ENST00000591126 TIMM17BO60830 172 aa4.5□□□□□ -1.69
SMAD4-212ENST00000591126 HIGD2AQ9BW72 106 aa4.5□□□□□ -1.69
SMAD4-212ENST00000591126 VPS13AQ96RL7 3174 aa4.5□□□□□ -1.69
SMAD4-212ENST00000591126 LRCOL1A6NCL2 159 aa4.5□□□□□ -1.69
SMAD4-212ENST00000591126 K7EN84 100 aa4.5□□□□□ -1.69
SMAD4-212ENST00000591126 WIPF1O43516 503 aa4.5□□□□□ -1.69
SMAD4-212ENST00000591126 HIST1H2BKO60814 126 aa4.5□□□□□ -1.69
SMAD4-212ENST00000591126 TRACP01848 142 aa4.5□□□□□ -1.69
SMAD4-212ENST00000591126 HIST1H2BJP06899 126 aa4.5□□□□□ -1.69
SMAD4-212ENST00000591126 HIST1H2BOP23527 126 aa4.5□□□□□ -1.69
SMAD4-212ENST00000591126 HIST1H2BBP33778 126 aa4.5□□□□□ -1.69
SMAD4-212ENST00000591126 HIST1H2BDP58876 126 aa4.5□□□□□ -1.69
SMAD4-212ENST00000591126 HIST1H2BCP62807 126 aa4.5□□□□□ -1.69
SMAD4-212ENST00000591126 HIST2H2BEQ16778 126 aa4.5□□□□□ -1.69
SMAD4-212ENST00000591126 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.5□□□□□ -1.69
SMAD4-212ENST00000591126 HIST1H2BHQ93079 126 aa4.5□□□□□ -1.69
SMAD4-212ENST00000591126 HIST1H2BNQ99877 126 aa4.5□□□□□ -1.69
SMAD4-212ENST00000591126 HIST1H2BMQ99879 126 aa4.5□□□□□ -1.69
SMAD4-212ENST00000591126 SPCS1Q9Y6A9 102 aa4.5□□□□□ -1.69
SMAD4-212ENST00000591126 EXPH5Q8NEV8 1989 aa4.49□□□□□ -1.69
SMAD4-212ENST00000591126 EPG5Q9HCE0 2579 aa4.49□□□□□ -1.69
SMAD4-212ENST00000591126 TMEM256-PLSCR3K7ERE1 68 aa4.49□□□□□ -1.69
SMAD4-212ENST00000591126 C3orf79P0CE67 100 aa4.49□□□□□ -1.69
SMAD4-212ENST00000591126 C5orf47Q569G3 176 aa4.49□□□□□ -1.69
SMAD4-212ENST00000591126 ATOH7Q8N100 152 aa4.49□□□□□ -1.69
SMAD4-212ENST00000591126 BAALCQ8WXS3 180 aa4.49□□□□□ -1.69
SMAD4-212ENST00000591126 CNFNQ9BYD5 112 aa4.49□□□□□ -1.69
SMAD4-212ENST00000591126 NPC2P61916 151 aa4.49□□□□□ -1.69
SMAD4-212ENST00000591126 Q6ZUT4 128 aa4.49□□□□□ -1.69
SMAD4-212ENST00000591126 PRO1933Q9H354 126 aa4.49□□□□□ -1.69
SMAD4-212ENST00000591126 PLA2G2EQ9NZK7 142 aa4.49□□□□□ -1.69
SMAD4-212ENST00000591126 RNASE3P12724 160 aaKnown RBP4.49□□□□□ -1.69
SMAD4-212ENST00000591126 ANKRD11Q6UB99 2663 aaPredicted RBP4.49□□□□□ -1.69
SMAD4-212ENST00000591126 WDFY4Q6ZS81 3184 aa4.49□□□□□ -1.69
SMAD4-212ENST00000591126 E9PLD3 99 aa4.48□□□□□ -1.69
SMAD4-212ENST00000591126 KRTAP1-1Q07627 177 aa4.48□□□□□ -1.69
SMAD4-212ENST00000591126 Q6ZPA2 131 aa4.48□□□□□ -1.69
SMAD4-212ENST00000591126 Q6JHZ5 121 aa4.48□□□□□ -1.69
SMAD4-212ENST00000591126 FAM19A5Q7Z5A7 132 aaPredicted RBP4.48□□□□□ -1.69
SMAD4-212ENST00000591126 LINC00337Q8N6G1 96 aa4.48□□□□□ -1.69
SMAD4-212ENST00000591126 HIST2H2BDQ6DRA6 164 aa4.48□□□□□ -1.69
SMAD4-212ENST00000591126 ANKRD29Q8N6D5 301 aa4.48□□□□□ -1.69
SMAD4-212ENST00000591126 FASNP49327 2511 aaKnown RBP4.48□□□□□ -1.69
SMAD4-212ENST00000591126 PRB4P10163 310 aaPredicted RBP4.48□□□□□ -1.69
SMAD4-212ENST00000591126 ZNF80P51504 273 aaPredicted RBP4.48□□□□□ -1.69
SMAD4-212ENST00000591126 RNASE13Q5GAN3 156 aaKnown RBP4.48□□□□□ -1.69
SMAD4-212ENST00000591126 A0A1B0GX51 115 aa4.47□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 425.2 ms